Nucleotide Global Alignment

Description

Query:
ccsbBroad304_11214
Subject:
NR_047646.1
Aligned Length:
6434
Identities:
397
Gaps:
5998

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  GCTCATCGTTTGTTGTTTAGATAATATCATGAACTGATAAATGCAGTTGCCACGTTGATTCCCTAGGGCCTGGC  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  TTACCGACTGAGGTCATAAGATATTATGCCTTCTCTTTAGACTTGGTCAGTGGAGAGGAAATGGGCAAAGAACC  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  AGCCTATGGAGGTGACAAGGCCTTAGGGCCAAAAGTCTTGAGGGTGAAGGTTTAGGGCCTGCGCAGCTTCCCTG  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  CCATGCCCCGCAAGGTCTCGCATTCGCAAGGCTTGTGACAGTGGGAGCCTCATTACGGACTCTCCTAAAGTCCA  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  TGGTGTCCTCTTTTCGCATTTGCGCCCCGTGGGTGATGCCCGATGCCGCCCTTCCCATCGCTCTCTTCCCCTTC  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  AAGCGTATCGCAACTGCAAAAACACCCAGCACAGACACTCCATTTTCTATCTTAATGCATTTAACTAGCACAAC  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  CTACAGGTTGTTCCATCCCAGAGACTACCCTTTTCTCCATAGACGTGACCATCAACCAACCAGCGGTCAGAATC  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  AGTCAGCCTCTGTCATGTTCCTAGGTCCTTGGCGAACTGGCTGGGCGGGGTCCCAGCAGCCTAGGAGTACAGTG  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  GAGCAATGCCTGACGTAAGTCAACAAAGATCACGTGAGACGAATCAGTCGCCTAGATTGGCTACAACTAAGTGG  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  TTGGGAGCGGGGAGGTCGCGGCGGCTGCGTGGGGTTCGCCCGTGACACAATTACAACTTTGTGCTGGTGCTGGC  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  AAAGTTTGTGATTTTAAGAAATTCTGCTGTGCTCTCCAGCACTGCGAGCTTCTGCCTTCCCTGTAGTTTCCCAG  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  ATGTGATCCAGGTAGCCGAGTTCCGCTGCCCGTGCTTCGGTAGCTTAAGTCTTTGCCTCAGCTTTTTTCCTTGC  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  AGCCGCTGAGGAGGCGATAAAATTGGCGTCACAGTCTCAAGCAGCGATTGAAGGCGTCTTTTCAACTACTCGAT  962

Query    1  -------------------------------------------ATGAAATCGTGCGCAGTGTCGCTCACTACCG  31
                                                       ||||||||.||||||||||||||||||||||
Sbjct  963  TAAGGTTGGGTATCGTCGTGGGACTTGGAAATTTGTTGTTTCCATGAAATCCTGCGCAGTGTCGCTCACTACCG  1036

Query   32  CCGCTGTTGCCTTCGGTGATGAGGCAAAGAAAATGGCGGAAGGAAAAGCGAGCCGCGAGAGTGAAGAGGAGTCT  105
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037  CCGCTGTTGCCTTCGGTGATGAGGCAAAGAAAATGGCGGAAGGAAAAGCGAGCCGCGAGAGTGAAGAGGAGTCT  1110

Query  106  GTTAGCCTGACAGTCGAGGAAAGGGAGGCGCTTGGTGGCATGGACAGCCGTCTCTTCGGGTTCGTGAGGCTTCA  179
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111  GTTAGCCTGACAGTCGAGGAAAGGGAGGCGCTTGGTGGCATGGACAGCCGTCTCTTCGGGTTCGTGAGGCTTCA  1184

Query  180  TGAAGATGGCGCCAGAACGAAGACCCTACTAGGCAAGG---------------------------TAAAAGC--  224
            ||||||||||||||||||||||||||||||||||||||                           |||||||  
Sbjct 1185  TGAAGATGGCGCCAGAACGAAGACCCTACTAGGCAAGGCTGTTCGCTGCTACGAATCTTTAATCTTAAAAGCTG  1258

Query  225  AACCAGACGCAAAG------------TCTTT---------GGTCCGCACTT-----------------------  254
            |     |.|.||||            |||||         |||   |||||                       
Sbjct 1259  A-----AGGAAAAGTGGAGTCTGACTTCTTTTGCCAATTAGGT---CACTTCAACCTCTTGTTGGAAGATTATT  1324

Query  255  -------------TGC------------------TCTACCAAGGC----------------CCCGCGTTCCT-T  280
                         |||                  |.|||  ||||                .|.|||||..| |
Sbjct 1325  CAAAAGCATTATCTGCATATCAGAGATATTACAGTTTAC--AGGCTGACTACTGGAAGAATGCTGCGTTTTTAT  1396

Query  281  ACCGCC----------------------CA--------------GCCAGTA------------------TTTAT  300
            |..|||                      ||              ||.|.||                  |||||
Sbjct 1397  ATGGCCTTGGTTTGGTCTACTTCTACTACAATGCATTTCATTGGGCAATTAAAGCATTTCAAGATGTCCTTTAT  1470

Query  301  TTTG------GCTCTGCTCCATGGCCAAGG-----------------GGTCGGA-----AAAGTG---------  337
            .|||      |||.|..||.|  |||||||                 ||.|..|     ||||||         
Sbjct 1471  GTTGACCCCAGCTTTTGTCGA--GCCAAGGAAATTCATTTACGACTTGGGCTCATGTTCAAAGTGAACACAGAC  1542

Query  338  ---------------------TTTC---TTGCCT---TTG-CTG---TCCCCGTACT----------CTGGAAT  370
                                 ||||   |.||||   ||| |||   |||..|||||          |||.|||
Sbjct 1543  TACAAGTCTAGTTTAAAGCATTTTCAGTTAGCCTTGATTGACTGTAATCCATGTACTTTGTCCAATGCTGAAAT  1616

Query  371  ---ACTTC-----GCCCCTTGCT-------CCAGA------CTCCCTTCTACTCTG---AGGA--------AAA  412
               |.|||     ||||.||..|       |||||      .||      |.||||   ||||        ||.
Sbjct 1617  TCAATTTCATATTGCCCATTTGTATGAAACCCAGAGGAAGTATC------ATTCTGCAAAGGAGGCATATGAAC  1684

Query  413  AAAAAATCGGACGCTTTGG--GACCGGGCTAAACCGGGT--CTACACCA-------CA-------TGC--CTGT  466
            ||           ||||.|  |||.|   .|||||   |  ||.|||.|       ||       |||  |.||
Sbjct 1685  AA-----------CTTTTGCAGACAG---AAAACC---TTCCTGCACAAGTAAAAGCAACTGTATTGCAACAGT  1741

Query  467  TACTT---------------------------------------------------------------------  471
            ||..|                                                                     
Sbjct 1742  TAGGTGTTATTCAAGTATTGGGAAAGTTCAGGATGCCTTTATATCTTACAGGCAATCTATTGATAAATCAGAAG  1815

Query  472  --------------------------------------------------------------------------  471
                                                                                      
Sbjct 1816  CAAGTGCAGATACATGGTGTTCAATAGGTGTGTTGTATCAGCAGCAAAATCAGCCTATGGATGCTTTACAGGCA  1889

Query  472  --------------------------------------------------------------------------  471
                                                                                      
Sbjct 1890  TATATTTGTGCTGTACAATTGGACCATGGGCATGCCGCAGCCTGGATGGACCTAGGTACTCTCTATGAATCCTG  1963

Query  472  --------------------------------------------------------------------------  471
                                                                                      
Sbjct 1964  CAATCAACCTCAAGATGCCATTAAATGCTACCTAAATGCAGCTAGAAGCAAACGTTGTAGTAATACCTCTACGC  2037

Query  472  --------------------------------------------------------------------------  471
                                                                                      
Sbjct 2038  TTGCTGCAAGAATTAAATTTCTACAGAATGGTTCTGATAACTGGAATGGTGGCCAGAGTCTTTCACATCATCCA  2111

Query  472  --------------------------------------------------------------------------  471
                                                                                      
Sbjct 2112  GTACAGCAAGTTTATTCGTTGTGTTTGACACCACAGAAATTACAGCACTTGGAACAACTGCGAGCAAATAGAGA  2185

Query  472  --------------------------------------------------------------------------  471
                                                                                      
Sbjct 2186  TAATTTAAATCCAGCACAGAAGCATCAGCTGGAACAGTTAGAAAGTCAGTTTGTCTTAATGCAGCAAATGAGAC  2259

Query  472  --------------------------------------------------------------------------  471
                                                                                      
Sbjct 2260  ACAAAGAAGTTGCTCAGGTACGAACTACTGGAATTCATAACGGGGCCATAACTGATTCATCACTGCCTACAAAC  2333

Query  472  --------------------------------------------------------------------------  471
                                                                                      
Sbjct 2334  TCTGTCTCTAATCGACAACCACATGGTGCTCTGACCAGAGTATCTAGCGTCTCTCAGCCTGGAGTTCGCCCTGC  2407

Query  472  --------------------------------------------------------------------------  471
                                                                                      
Sbjct 2408  TTGTGTTGAAAAACTTTTGTCCAGTGGAGCTTTTTCTGCAGGCTGTATTCCTTGTGGCACATCAAAAATTCTAG  2481

Query  472  --------------------------------------------------------------------------  471
                                                                                      
Sbjct 2482  GAAGTACAGACACTATCTTGCTAGGCAGTAATTGTATAGCAGGAAGTGAAAGTAATGGAAATGTGCCTTACCTG  2555

Query  472  --------------------------------------------------------------------------  471
                                                                                      
Sbjct 2556  CAGCAAAATACACACACTCTACCTCATAATCATACAGACCTGAACAGCAGCACAGAAGAGCCATGGAGAAAACA  2629

Query  472  --------------------------------------------------------------------------  471
                                                                                      
Sbjct 2630  GCTATCTAACTCCGCTCAGGGGCTTCATAAAAGTCAGAGTTCATGTTTGTCAGGACCTAATGAAGAACAACCTC  2703

Query  472  --------------------------------------------------------------------------  471
                                                                                      
Sbjct 2704  TGTTTTCCACTGGGTCAGCCCAGTATCACCAGGCAACTAGCACTGGTATTAAGAAGGCGAATGAACATCTCACT  2777

Query  472  --------------------------------------------------------------------------  471
                                                                                      
Sbjct 2778  CTGCCTAGTAATTCAGTACCACAGGGGGATGCTGACAGTCACCTCTCCTGTCATACTGCTACCTCAGGTGGACA  2851

Query  472  --------------------------------------------------------------------------  471
                                                                                      
Sbjct 2852  ACAAGGCATTATGTTTACCAAAGAGAGCAAGCCTTCAAAAAATAGATCCTTGGTGCCTGAAACAAGCAGGCATA  2925

Query  472  --------------------------------------------------------------------------  471
                                                                                      
Sbjct 2926  CTGGAGACACATCTAATGGCTGTGCTGATGTCAAGGGACTTTCTAATCATGTTCATCAGTTGATAGCAGATGCT  2999

Query  472  --------------------------------------------------------------------------  471
                                                                                      
Sbjct 3000  GTTTCCAGTCCTAACCATGGAGATTCACCAAATTTATTAATTGCAGACAATCCTCAGCTCTCTGCTTTGTTGAT  3073

Query  472  --------------------------------------------------------------------------  471
                                                                                      
Sbjct 3074  TGGAAAAGCCAATGGCAATGTGGGTACTGGAACCTGTGACAAAGTGAATAATATTCACCCAGCTGTTCATACAA  3147

Query  472  --------------------------------------------------------------------------  471
                                                                                      
Sbjct 3148  AGACTGATCATTCTGTTGCCTCTTCACCCTCTTCAGCCATTTCCACAGCAACACCTTCTCCTAAATCCACTGAG  3221

Query  472  --------------------------------------------------------------------------  471
                                                                                      
Sbjct 3222  CAGAGAAGCATAAACAGTGTTACCAGCCTTAACAGTCCTCACAGTGGATTACACACAGTCAATGGAGAGGGGCT  3295

Query  472  --------------------------------------------------------------------------  471
                                                                                      
Sbjct 3296  GGGGAAGTCACAGAGCTCTACAAAAGTAGACCTGCCTTTAGCTAGCCACAGATCTACTTCTCAGATCTTACCAT  3369

Query  472  --------------------------------------------------------------------------  471
                                                                                      
Sbjct 3370  CAATGTCAGTGTCTATATGCCCCAGTTCAACAGAAGTTCTGAAAGCATGCAGGAATCCAGGTAAAAATGGCTTG  3443

Query  472  --------------------------------------------------------------------------  471
                                                                                      
Sbjct 3444  TCTAATAGCTGCATTTTGTTAGATAAATGTCCACCTCCAAGACCACCAACTTCACCATACCCACCCTTGCCAAA  3517

Query  472  --------------------------------------------------------------------------  471
                                                                                      
Sbjct 3518  GGACAAGTTGAATCCACCCACACCTAGTATTTACTTGGAAAATAAACGTGATGCTTTCTTTCCTCCATTACATC  3591

Query  472  --------------------------------------------------------------------------  471
                                                                                      
Sbjct 3592  AATTTTGTACAAATCCAAAAAACCCTGTTACAGTAATACGTGGCCTTGCTGGAGCTCTTAAATTAGATCTTGGA  3665

Query  472  --------------------------------------------------------------------------  471
                                                                                      
Sbjct 3666  CTTTTCTCTACCAAAACTTTGGTAGAAGCTAACAATGAACATATGGTAGAAGTGAGGACACAGTTGCTGCAACC  3739

Query  472  --------------------------------------------------------------------------  471
                                                                                      
Sbjct 3740  AGCAGATGAAAACTGGGATCCCACTGGAACAAAGAAAATCTGGCGTTGTGAAAGCAATAGATCTCATACTACAA  3813

Query  472  --------------------------------------------------------------------------  471
                                                                                      
Sbjct 3814  TTGCCAAATACGCACAATACCAGGCTTCCTCCTTCCAGGAATCATTGAGAGAAGAAAATGAGAAAAGAACACAA  3887

Query  472  --------------------------------------------------------------------------  471
                                                                                      
Sbjct 3888  CACAAAGATCATTCAGATAACGAATCCACATCTTCAGAGAATTCTGGAAGGAGAAGGAAAGGACCTTTTAAAAC  3961

Query  472  --------------------------------------------------------------------------  471
                                                                                      
Sbjct 3962  CATAAAATTTGGGACCAACATTGACCTCTCTGATAACAAAAAGTGGAAGTTGCAGTTACATGAACTGACTAAAC  4035

Query  472  --------------------------------------------------------------------------  471
                                                                                      
Sbjct 4036  TTCCTGCTTTTGCGCGTGTGGTGTCAGCAGGAAATCTTCTAACCCATGTTGGGCATACCATTCTGGGCATGAAT  4109

Query  472  --------------------------------------------------------------------------  471
                                                                                      
Sbjct 4110  ACAGTACAACTGTATATGAAAGTTCCAGGGAGTCGGACACCAGGTCACCAAGAAAATAACAACTTCTGCTCTGT  4183

Query  472  --------------------------------------------------------------------------  471
                                                                                      
Sbjct 4184  TAACATAAATATTGGTCCAGGAGATTGTGAATGGTTTGTTGTACCTGAAGATTATTGGGGTGTTCTGAATGACT  4257

Query  472  --------------------------------------------------------------------------  471
                                                                                      
Sbjct 4258  TCTGTGAAAAAAATAATTTGAATTTTTTAATGAGTTCTTGGTGGCCCAACCTTGAAGATCTTTATGAAGCAAAT  4331

Query  472  --------------------------------------------------------------------------  471
                                                                                      
Sbjct 4332  GTCCCTGTGTATAGATTTATTCAGCGACCTGGAGATTTGGTCTGGATAAATGCAGGCACTGTGCATTGGGTTCA  4405

Query  472  --------------------------------------------------------------------------  471
                                                                                      
Sbjct 4406  AGCTGTTGGCTGGTGCAATAACATTGCCTGGAATGTTGGTCCACTTACAGCCTGCCAGTATAAATTGGCAGTGG  4479

Query  472  --------------------------------------------------------------------------  471
                                                                                      
Sbjct 4480  AACGGTATGAATGGAACAAATTGAAAAGTGTGAAGTCACCAGTACCCATGGTGCATCTTTCCTGGAATATGGCA  4553

Query  472  --------------------------------------------------------------------------  471
                                                                                      
Sbjct 4554  CGAAATATCAAAGTCTCAGATCCAAAGCTTTTTGAAATGATTAAGTATTGTCTTTTGAAAATTCTGAAGCAATA  4627

Query  472  --------------------------------------------------------------------------  471
                                                                                      
Sbjct 4628  TCAGACATTGAGAGAAGCTCTTGTTGCAGCAGGAAAAGAGGTTATATGGCATGGGCGGACAAATGATGAACCAG  4701

Query  472  --------------------------------------------------------------------------  471
                                                                                      
Sbjct 4702  CTCATTACTGTAGCATTTGTGAGGTGGAGGTTTTTAATCTGCTTTTTGTCACTAATGAAAGCAATACTCAAAAA  4775

Query  472  --------------------------------------------------------------------------  471
                                                                                      
Sbjct 4776  ACCTACATAGTACATTGCCATGATTGTGCACGAAAAACAAGCAAAAGTTTGGAAAATTTTGTGGTGCTCGAACA  4849

Query  472  --------------------------------------------------------------------------  471
                                                                                      
Sbjct 4850  GTACAAAATGGAGGACCTAATCCAAGTTTATGATCAATTTACACTAGCTCTTTCATTATCATCCTCATCTTGAT  4923

Query  472  --------------------------------------------------------------------------  471
                                                                                      
Sbjct 4924  ATAGTTCCATGAATATTAAATGAGATTATTTCTGCTCTTCAGGAAATTTCTGCACCACTGGTTTTGTAGCTGTT  4997

Query  472  --------------------------------------------------------------------------  471
                                                                                      
Sbjct 4998  TCATAAAACTGTTGACTAAAAGCTATGTCTATGCAACCTTCCAAGAATAGTATGTCAAGCAACTGGACACAGTG  5071

Query  472  --------------------------------------------------------------------------  471
                                                                                      
Sbjct 5072  CTGCCTCTGCTTCAGGACTTAACATGCTGATCCAGCTGTACTTCAGAAAAATAATATTAATCATATGTTTTGTG  5145

Query  472  --------------------------------------------------------------------------  471
                                                                                      
Sbjct 5146  TACGTATGACAAACTGTCAAAGTGACACAGAATACTGATTTGAAGATAGCCTTTTTTATGTTTCTCTATTTCTG  5219

Query  472  --------------------------------------------------------------------------  471
                                                                                      
Sbjct 5220  GGCTGATGAATTAATATTCATTTGTATTTTAACCCTGCAGAATTTTCCTTAGTTAAAAACACTTTCCTAGCTGG  5293

Query  472  --------------------------------------------------------------------------  471
                                                                                      
Sbjct 5294  TCATTTCTTCATAAGATAGCAAATTTAAATCTCTCCTCGATCAGCTTTTAAAAAATGTGTACTATTATCTGAGG  5367

Query  472  --------------------------------------------------------------------------  471
                                                                                      
Sbjct 5368  AAGTTTTTTACTGCTTTATGTTTTTGTGTGTTTTGAGGCCATGATGATTACATTTGTGGTTCCAAAATAATTTT  5441

Query  472  --------------------------------------------------------------------------  471
                                                                                      
Sbjct 5442  TTTAAATATTAATAGCCCATATACAAAGATAATGGATTGCACATAGACAAAGAAATAAACTTCAGATTTGTGAT  5515

Query  472  --------------------------------------------------------------------------  471
                                                                                      
Sbjct 5516  TTTTGTTTCTAAACTTGATACAGATTTACACTATTTATAAATACGTATTTATTGCCTGAAAATATTTGTGAATG  5589

Query  472  --------------------------------------------------------------------------  471
                                                                                      
Sbjct 5590  GAATGTTGTTTTTTTCCAGACGTAACTGCCATTAAATACTAAGGAGTTCTGTAGTTTTAAACACTACTCCTATT  5663

Query  472  --------------------------------------------------------------------------  471
                                                                                      
Sbjct 5664  ACATTTTATATGTGTAGATAAAACTGCTTAGTATTATACAGAAATTTTTATTAAAATTGTTAAATGTTTAAAGG  5737

Query  472  --------------------------------------------------------------------------  471
                                                                                      
Sbjct 5738  GTTTCCCAATGTTTGAGTTTAAAAAAGACTTTCTGAAAAAATCCACTTTTTGTTCATTTTCAAACCTAATGATT  5811

Query  472  --------------------------------------------------------------------------  471
                                                                                      
Sbjct 5812  ATATGTATTTTATATGTGTGTGTATGTGTACACACATGTATAATATATACAGAAACCTCGATATATAATTGTAT  5885

Query  472  --------------------------------------------------------------------------  471
                                                                                      
Sbjct 5886  AGATTTTAAAAGTTTTATTTTTTACATCTATGGTAGTTTTTGAGGTGCCTATTATAAAGTATTACGGAAGTTTG  5959

Query  472  --------------------------------------------------------------------------  471
                                                                                      
Sbjct 5960  CTGTTTTTAAAGTAAATGTCTTTTAGTGTGATTTATTAAGTTGTAGTCACCATAGTGATAGCCCATAAATAATT  6033

Query  472  --------------------------------------------------------------------------  471
                                                                                      
Sbjct 6034  GCTGGAAAATTGTATTTTATAACAGTAGAAAACATATAGTCAGTGAAGTAAATATTTTAAAGGAAACATTATAT  6107

Query  472  --------------------------------------------------------------------------  471
                                                                                      
Sbjct 6108  AGATTTGATAAATGTTGTTTATAATTAAGAGTTTCTTATGGAAAAGAGATTCAGAATGATAACCTCTTTTAGAG  6181

Query  472  --------------------------------------------------------------------------  471
                                                                                      
Sbjct 6182  AACAAATAAGTGACTTATTTTTTTAAAGCTAGATGACTTTGAAATGCTATACTGTCCTGCTTGTACAACATGGT  6255

Query  472  --------------------------------------------------------------------------  471
                                                                                      
Sbjct 6256  TTGGGGTGAAGGGGAGGAAAGTATTAAAAAATCTATATCGCTAGTAAATTGTAATAAGTTCTATTAAAACTTGT  6329

Query  472  ----------------------------------------------------------------------  471
                                                                                  
Sbjct 6330  ATTTCATATGAAAAATTTGCTAATTTAATATTAACTCATTTGATAATAATACTTGTCTTTTCTACCTCTC  6399