Nucleotide Global Alignment

Description

Query:
ccsbBroad304_11214
Subject:
XR_002958831.1
Aligned Length:
3162
Identities:
397
Gaps:
2726

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  GGCTACAACTAAGTGGTTGGGAGCGGGGAGGTCGCGGCGGCTGCGTGGGGTTCGCCCGTGACACAATTACAACT  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  TTGTGCTGGTGCTGGCAAAGTTTGTGATTTTAAGAAATTCTGCTGTGCTCTCCAGCACTGCGAGCTTCTGCCTT  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  CCCTGTAGTTTCCCAGATGTGATCCAGGTAGCCGAGTTCCGCTGCCCGTGCTTCGGTAGCTTAAGTCTTTGCCT  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  CAGCTTTTTTCCTTGCAGCCGCTGAGGAGGCGATAAAATTGGCGTCACAGTCTCAAGCAGCGATTGAAGGCGTC  296

Query    1  -----------------------------------------------------------ATGAAATCGTGCGCA  15
                                                                       ||||||||.||||||
Sbjct  297  TTTTCAACTACTCGATTAAGGTTGGGTATCGTCGTGGGACTTGGAAATTTGTTGTTTCCATGAAATCCTGCGCA  370

Query   16  GTGTCGCTCACTACCGCCGCTGTTGCCTTCGGTGATGAGGCAAAGAAAATGGCGGAAGGAAAAGCGAGCCGCGA  89
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  371  GTGTCGCTCACTACCGCCGCTGTTGCCTTCGGTGATGAGGCAAAGAAAATGGCGGAAGGAAAAGCGAGCCGCGA  444

Query   90  GAGTGAAGAGGAGTCTGTTAGCCTGACAGTCGAGGAAAGGGAGGCGCTTGGTGGCATGGACAGCCGTCTCTTCG  163
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  445  GAGTGAAGAGGAGTCTGTTAGCCTGACAGTCGAGGAAAGGGAGGCGCTTGGTGGCATGGACAGCCGTCTCTTCG  518

Query  164  GGTTCGTGAGGCTTCATGAAGATGGCGCCAGAACGAAGACCCTACTAGGCAAGG--------------------  217
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||                    
Sbjct  519  GGTTCGTGAGGCTTCATGAAGATGGCGCCAGAACGAAGACCCTACTAGGCAAGGCTGTTCGCTGCTACGAATCT  592

Query  218  -------TAAAAGC--AACCAGACGCAAAG------------TCTTT---------GGTCCGCACTT-------  254
                   |||||||  |     |.|.||||            |||||         |||   |||||       
Sbjct  593  TTAATCTTAAAAGCTGA-----AGGAAAAGTGGAGTCTGACTTCTTTTGCCAATTAGGT---CACTTCAACCTC  658

Query  255  -----------------------------TGC------------------TCTACCAAGGC-------------  268
                                         |||                  |.|||  ||||             
Sbjct  659  TTGTTGGAAGATTATTCAAAAGCATTATCTGCATATCAGAGATATTACAGTTTAC--AGGCTGACTACTGGAAG  730

Query  269  ---CCCGCGTTCCT-TACCGCC----------------------CA--------------GCCAGTA-------  295
               .|.|||||..| ||..|||                      ||              ||.|.||       
Sbjct  731  AATGCTGCGTTTTTATATGGCCTTGGTTTGGTCTACTTCTACTACAATGCATTTCATTGGGCAATTAAAGCATT  804

Query  296  -----------TTTATTTTG------GCTCTGCTCCATGGCCAAGG-----------------GGTCGGA----  331
                       |||||.|||      |||.|..||.|  |||||||                 ||.|..|    
Sbjct  805  TCAAGATGTCCTTTATGTTGACCCCAGCTTTTGTCGA--GCCAAGGAAATTCATTTACGACTTGGGCTCATGTT  876

Query  332  -AAAGTG------------------------------TTTC---TTGCCT---TTG-CTG---TCCCCGTACT-  363
             ||||||                              ||||   |.||||   ||| |||   |||..||||| 
Sbjct  877  CAAAGTGAACACAGACTACAAGTCTAGTTTAAAGCATTTTCAGTTAGCCTTGATTGACTGTAATCCATGTACTT  950

Query  364  ---------CTGGAAT---ACTTC-----GCCCCTTGCT-------CCAGA------CTCCCTTCTACTCTG--  405
                     |||.|||   |.|||     ||||.||..|       |||||      .||      |.||||  
Sbjct  951  TGTCCAATGCTGAAATTCAATTTCATATTGCCCATTTGTATGAAACCCAGAGGAAGTATC------ATTCTGCA  1018

Query  406  -AGGA--------AAAAAAAAATCGGACGCTTTGG--GACCGGGCTAAACCGGGT--CTACACCA-------CA  459
             ||||        ||.||           ||||.|  |||.|   .|||||   |  ||.|||.|       ||
Sbjct 1019  AAGGAGGCATATGAACAA-----------CTTTTGCAGACAG---AAAACC---TTCCTGCACAAGTAAAAGCA  1075

Query  460  -------TGC--CTGTTACTT-----------------------------------------------------  471
                   |||  |.||||..|                                                     
Sbjct 1076  ACTGTATTGCAACAGTTAGGTTGGATGCATCATAATATGGATCTAGTAGGAGACAAAGCCACAAAGGAAAGCTA  1149

Query  472  --------------------------------------------------------------------------  471
                                                                                      
Sbjct 1150  TGCTATTCAGTATCTCCAAAAGTCTTTGGAGGCAGATCCTAATTCTGGCCAATCGTGGTATTTTCTTGGAAGGT  1223

Query  472  --------------------------------------------------------------------------  471
                                                                                      
Sbjct 1224  GTTATTCAAGTATTGGGAAAGTTCAGGATGCCTTTATATCTTACAGGCAATCTATTGATAAATCAGAAGCAAGT  1297

Query  472  --------------------------------------------------------------------------  471
                                                                                      
Sbjct 1298  GCAGATACATGGTGTTCAATAGGTGTGTTGTATCAGCAGCAAAATCAGCCTATGGATGCTTTACAGGCATATAT  1371

Query  472  --------------------------------------------------------------------------  471
                                                                                      
Sbjct 1372  TTGTGCTGTACAATTGGACCATGGGCATGCCGCAGCCTGGATGGACCTAGGTACTCTCTATGAATCCTGCAATC  1445

Query  472  --------------------------------------------------------------------------  471
                                                                                      
Sbjct 1446  AACCTCAAGATGCCATTAAATGCTACCTAAATGCAGCTAGAAGCAAACGTTGTAGTAATACCTCTACGCTTGCT  1519

Query  472  --------------------------------------------------------------------------  471
                                                                                      
Sbjct 1520  GCAAGAATTAAATTTCTACAGGCTTATAGAGCTCATGATCCAAATACTGAACATGTATTAAACCACAGTCAAAC  1593

Query  472  --------------------------------------------------------------------------  471
                                                                                      
Sbjct 1594  ACCAATTTTACAGCAATCCTTGTCACTACACATGATTACTTCTAGCCAAGTAGAAGGCCTGTCCAGTCCTGCCA  1667

Query  472  --------------------------------------------------------------------------  471
                                                                                      
Sbjct 1668  AGAAGAAAAGAACATCTAGTCCAACAAAGAATGGTTCTGATAACTGGAATGGTGGCCAGAGTCTTTCACATCAT  1741

Query  472  --------------------------------------------------------------------------  471
                                                                                      
Sbjct 1742  CCAGTACAGCAAGTTTATTCGTTGTGTTTGACACCACAGAAATTACAGCACTTGGAACAACTGCGAGCAAATAG  1815

Query  472  --------------------------------------------------------------------------  471
                                                                                      
Sbjct 1816  AGATAATTTAAATCCAGCACAGAAGCATCAGCTGGAACAGTTAGAAAGTCAGTTTGTCTTAATGCAGCAAATGA  1889

Query  472  --------------------------------------------------------------------------  471
                                                                                      
Sbjct 1890  GACACAAAGAAGTTGCTCAGGTACGAACTACTGGAATTCATAACGGGGCCATAACTGATTCATCACTGCCTACA  1963

Query  472  --------------------------------------------------------------------------  471
                                                                                      
Sbjct 1964  AACTCTGTCTCTAATCGACAACCACATGGTGCTCTGACCAGAGTATCTAGCGTCTCTCAGCCTGGAGTTCGCCC  2037

Query  472  --------------------------------------------------------------------------  471
                                                                                      
Sbjct 2038  TGCTTGTGTTGAAAAACTTTTGTCCAGTGGAGCTTTTTCTGCAGGCTGTATTCCTTGTGGCACATCAAAAATTC  2111

Query  472  --------------------------------------------------------------------------  471
                                                                                      
Sbjct 2112  TAGGAAGTACAGACACTATCTTGCTAGGCAGTAATTGTATAGCAGGAAGTGAAAGTAATGGAAATGTGCCTTAC  2185

Query  472  --------------------------------------------------------------------------  471
                                                                                      
Sbjct 2186  CTGCAGCAAAATACACACACTCTACCTCATAATCATACAGACCTGAACAGCAGCACAGAAGAGCCATGGAGAAA  2259

Query  472  --------------------------------------------------------------------------  471
                                                                                      
Sbjct 2260  ACAGCTATCTAACTCCGCTCAGGAATCCAGGTAAAAATGGCTTGTCTAATAGCTGCATTTTGTTAGATAAATGT  2333

Query  472  --------------------------------------------------------------------------  471
                                                                                      
Sbjct 2334  CCACCTCCAAGACCACCAACTTCACCATACCCACCCTTGCCAAAGGACAAGTTGAATCCACCCACACCTAGTAT  2407

Query  472  --------------------------------------------------------------------------  471
                                                                                      
Sbjct 2408  TTACTTGGAAAATAAACGTGATGCTTTCTTTCCTCCATTACATCAATTTTGTACAAATCCAAAAAACCCTGTTA  2481

Query  472  --------------------------------------------------------------------------  471
                                                                                      
Sbjct 2482  CAGTAATACGTGGCCTTGCTGGAGCTCTTAAATTAGATCTTGGACTTTTCTCTACCAAAACTTTGGTAGAAGCT  2555

Query  472  --------------------------------------------------------------------------  471
                                                                                      
Sbjct 2556  AACAATGAACATATGGTAGAAGTGAGGACACAGTTGCTGCAACCAGCAGATGAAAACTGGGATCCCACTGGAAC  2629

Query  472  --------------------------------------------------------------------------  471
                                                                                      
Sbjct 2630  AAAGAAAATCTGGCGTTGTGAAAGCAATAGATCTCATACTACAATTGCCAAATACGCACAATACCAGGCTTCCT  2703

Query  472  --------------------------------------------------------------------------  471
                                                                                      
Sbjct 2704  CCTTCCAGGAATCATTGAGAGAAGAAAATGAGAAAAGAACACAACACAAAGATCATTCAGATAACGAATCCACA  2777

Query  472  --------------------------------------------------------------------------  471
                                                                                      
Sbjct 2778  TCTTCAGAGAATTCTGGAAGGAGAAGGAAAGGACCTTTTAAAACCATAAAATTTGGGACCAACATTGACCTCTC  2851

Query  472  --------------------------------------------------------------------------  471
                                                                                      
Sbjct 2852  TGATAACAAAAAGTGGAAGTTGCAGTTACATGAACTGACTAAACTTCCTGCTTTTGCGCGTGTGGTGTCAGCAG  2925

Query  472  --------------------------------------------------------------------------  471
                                                                                      
Sbjct 2926  GAAATCTTCTAACCCATGTTGGGCATACCATTCTGGGCATGAATACAGTACAACTGTATATGAAAGTTCCAGGG  2999

Query  472  --------------------------------------------------------------------------  471
                                                                                      
Sbjct 3000  AGTCGGACACCAGGTCACCAAGAAAATAACAACTTCTGCTCTGTTAACATAAATATTGGTCCAGGAGATTGTGA  3073

Query  472  ------------------------------------------------------  471
                                                                  
Sbjct 3074  ATGGTTTGTTGTACCTGAAGATTATTGGGGTGTTCTGAATGACTTCTGTGAAAA  3127

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