Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_11286
- Subject:
- XM_011534196.2
- Aligned Length:
- 4074
- Identities:
- 2309
- Gaps:
- 1764
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ATGCTGGACCCTTCGTCCAGCGAAGAAGAATCGGATGAGATCGTGGAGGAGGAGAGCGGCAAGGAGGTGCTCGG 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 CTCGGCCCCGTCCGGCGCGCGCCTGTCTCCCAGCCGTACCAGCGAGGGCTCGGCCGGCAGCGCCGGGCTGGGGG 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 GCGGCGGCGCCGGCGCCGGAGCCGGGGTGGGTGCAGGCGGCGGCGGGGGCAGCGGCGCGAGCAGCGGCGGCGGG 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 GCCGGGGGGCTGCAACCCAGCAGCCGCGCTGGCGGCGGCCGGCCCTCCAGCCCCAGCCCGTCGGTGGTGAGCGA 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 GAAGGAGAAGGAAGAGTTGGAGCGGCTGCAGAAAGAGGAGGAGGAGAGGAAGAAGAGGCTGCAGCTGTATGTGT 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 TCGTGATGCGCTGCATCGCCTACCCCTTTAATGCCAAGCAGCCCACCGACATGGCTCGCCGGCAGCAGAAGATC 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 AGCAAACAGCAGCTGCAGACAGTCAAGGACCGGTTTCAGGCTTTCCTCAATGGGGAAACCCAGATCATGGCTGA 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 CGAAGCCTTCATGAACGCTGTGCAGAGTTACTATGAGGTGTTCCTGAAGAGCGACCGTGTGGCCCGCATGGTTC 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 AGAGTGGAGGCTGTTCCGCCAACGACTCCCGGGAGGTCTTCAAGAAGCACATTGAGAAGAGAGTGCGCAGCCTG 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 CCTGAGATTGACGGCCTCAGCAAGGAGACTGTGCTGAGCTCCTGGATGGCCAAATTTGATGCCATCTACCGTGG 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 AGAAGAGGACCCGCGGAAGCAGCAGGCCCGGATGACAGCCAGCGCAGCCTCCGAGCTGATTCTGAGCAAGGAGC 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 AACTCTATGAGATGTTCCAGAACATTCTTGGGATCAAGAAGTTCGAACATCAGCTCCTTTACAATGCCTGCCAG 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 CTGGACAATCCAGATGAGCAAGCAGCCCAGATCAGACGAGAGCTGGATGGACGTCTACAAATGGCAGACCAAAT 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 AGCCAGGGAACGCAAATTTCCCAAGTTTGTATCCAAAGAAATGGAAAACATGTACATTGAGGAGCTGAAGTCAT 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 CTGTCAACCTGCTCATGGCCAACTTGGAGAGCATGCCGGTATCCAAAGGCGGGGAGTTCAAGCTCCAGAAACTC 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 AAACGCAGCCACAATGCTTCCATCATCGACATGGGCGAGGAGAGTGAGAACCAGCTCTCCAAGTCAGATGTCGT 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 GCTGTCTTTCTCATTGGAGGTGGTAATTATGGAAGTCCAAGGCCTCAAATCTTTGGCTCCAAATCGCATCGTAT 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 ATTGCACAATGGAGGTGGAAGGAGGAGAGAAACTACAGACTGATCAGGCCGAGGCTTCTAAACCAACCTGGGGC 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 ACCCAGGGTGACTTCTCCACAACCCATGCACTGCCAGCTGTGAAGGTGAAGCTGTTCACAGAGAGCACAGGCGT 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 CCTGGCGTTGGAGGACAAGGAGCTTGGGCGGGTTATTCTCCATCCCACCCCGAACAGCCCCAAACAGTCAGAGT 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 GGCACAAAATGACAGTCTCCAAAAACTGCCCCGACCAAGATCTCAAAATCAAACTTGCTGTCCGAATGGATAAG 1554
Query 1 ---------ATGAAGCATTCTGGGTATTTATGGGCCATCGGTAAGAATGTCTGGAAGAGATGGAAGAAAAGGTT 65
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555 CCTCAAAACATGAAGCATTCTGGGTATTTATGGGCCATCGGTAAGAATGTCTGGAAGAGATGGAAGAAAAGGTT 1628
Query 66 TTTTGTATTGGTGCAGGTCAGTCAGTACACGTTTGCCATGTGCAGTTATCGGGAGAAGAAAGCGGAGCCTCAGG 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1629 TTTTGTATTGGTGCAGGTCAGTCAGTACACGTTTGCCATGTGCAGTTATCGGGAGAAGAAAGCGGAGCCTCAGG 1702
Query 140 AACTTCTACAATTGGATGGCTACACTGTGGATTACACCGACCCCCAGCCAGGTTTGGAGGGTGGCCGAGCCTTC 213
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1703 AACTTCTACAATTGGATGGCTACACTGTGGATTACACCGACCCCCAGCCAGGTTTGGAGGGTGGCCGAGCCTTC 1776
Query 214 TTCAATGCTGTCAAGGAGGGAGACACCGTGATATTTGCCAGTGACGATGAACAAGACCGCATCCTGTGGGTCCA 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1777 TTCAATGCTGTCAAGGAGGGAGACACCGTGATATTTGCCAGTGACGATGAACAAGACCGCATCCTGTGGGTCCA 1850
Query 288 GGCCATGTATCGGGCCACGGGGCAGTCACACAAGCCTGTGCCCCCGACCCAAGTCCAGAAACTCAACGCCAAGG 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1851 GGCCATGTATCGGGCCACGGGGCAGTCACACAAGCCTGTGCCCCCGACCCAAGTCCAGAAACTCAACGCCAAGG 1924
Query 362 GAGGAAATGTACCTCAGCTGGATGCCCCTATCTCTCAATTTT------------ACGCAGATAGAGCTCAAAAA 423
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1925 GAGGAAATGTACCTCAGCTGGATGCCCCTATCTCTCAATTTTCTGGACTGAAGGACGCAGATAGAGCTCAAAAA 1998
Query 424 CATGGCATGGATGAATTTATCTCTTCCAACCCCTGTAACTTTGACCACGCTTCCCTCTTTGAGATGGTACAACG 497
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1999 CATGGCATGGATGAATTTATCTCTTCCAACCCCTGTAACTTTGACCACGCTTCCCTCTTTGAGATGGTACAACG 2072
Query 498 CCTTACTTTGGATCACAGACTTAATGATTCCTATTCTTGCCTGGGCTGGTTCAGTCCTGGCCAGGTGTTTGTAC 571
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2073 CCTTACTTTGGATCACAGACTTAATGATTCCTATTCTTGCCTGGGCTGGTTCAGTCCTGGCCAGGTGTTTGTAC 2146
Query 572 TAGACGAGTATTGCGCCCGAAATGGAGTCCGGGGGTGTCACCGACATCTCTGCTACCTCAGAGACTTGCTTGAA 645
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2147 TAGACGAGTATTGCGCCCGAAATGGAGTCCGGGGGTGTCACCGACATCTCTGCTACCTCAGAGACTTGCTTGAA 2220
Query 646 CGGGCAGAAAATGGCGCCATGATCGACCCCACCCTTCTTCACTACAGCTTTGCCTTCTGTGCATCCCATGTCCA 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2221 CGGGCAGAAAATGGCGCCATGATCGACCCCACCCTTCTTCACTACAGCTTTGCCTTCTGTGCATCCCATGTCCA 2294
Query 720 TGGGAACAGGCCTGATGGAATTGGAACTGTGACTGTTGAAGAAAAGGAACGTTTTGAAGAAATCAAAGAGAGGC 793
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2295 TGGGAACAGGCCTGATGGAATTGGAACTGTGACTGTTGAAGAAAAGGAACGTTTTGAAGAAATCAAAGAGAGGC 2368
Query 794 TCCGAGTTCTGCTAGAAAATCAGATTACACATTTTAGGTATTGCTTTCCATTTGGTCGACCTGAAGGTGCTTTG 867
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2369 TCCGAGTTCTGCTAGAAAATCAGATTACACATTTTAGGTATTGCTTTCCATTTGGTCGACCTGAAGGTGCTTTG 2442
Query 868 AAAGCTACTCTCTCACTCTTGGAAAGGGTTTTGATGAAAGATATTGTTACCCCAGTGCCACAAGAGGAGGTAAA 941
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2443 AAAGCTACTCTCTCACTCTTGGAAAGGGTTTTGATGAAAGATATTGTTACCCCAGTGCCACAAGAGGAGGTAAA 2516
Query 942 AACAGTTATCCGTAAATGTCTGGAACAGGCTGCGTTAGTCAACTATTCTCGGCTCTCAGAGTATGCCAAAATCG 1015
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2517 AACAGTTATCCGTAAATGTCTGGAACAGGCTGCGTTAGTCAACTATTCTCGGCTCTCAGAGTATGCCAAAATCG 2590
Query 1016 AAGAGAATCAAAAGGATGCAGAAAATGTAGGCCGGTTAATCACTCCTGCCAAAAAGCTTGAAGATACAATACGT 1089
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2591 A------------------AGAAAATGTAGGCCGGTTAATCACTCCTGCCAAAAAGCTTGAAGATACAATACGT 2646
Query 1090 CTTGCTGAACTAGTCATTGAAGTTCTTCAGCAAAATGAGGAGCACCACGC---------AGAGGCCTTTGCGTG 1154
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 2647 CTTGCTGAACTAGTCATTGAAGTTCTTCAGCAAAATGAGGAGCACCACGCAGAGGGGAAAGAGGCCTTTGCGTG 2720
Query 1155 GTGGTCAGATTTAATGGTGGAGCATGCGGAGACGTTCCTGTCACTCTTTGCAGTAGACATGGATGCAGCCTTAG 1228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2721 GTGGTCAGATTTAATGGTGGAGCATGCGGAGACGTTCCTGTCACTCTTTGCAGTAGACATGGATGCAGCCTTAG 2794
Query 1229 AGGTGCAACCTCCAGACACATGGGACAGTTTTCCACTATTTCAGCTGCTGAATGATTTTCTCCGTACTGACTAT 1302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2795 AGGTGCAACCTCCAGACACATGGGACAGTTTTCCACTATTTCAGCTGCTGAATGATTTTCTCCGTACTGACTAT 2868
Query 1303 AATTTGTGCAATGGAAAATTTCACAAACACCTGCAAGACCTGTTTGCCCCACTTGTTGTTAGATATGTGGATCT 1376
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2869 AATTTGTGCAATGGAAAATTTCACAAACACCTGCAAGACCTGTTTGCCCCACTTGTTGTTAGATATGTGGATCT 2942
Query 1377 GATGGAGTCCTCAATTGCACAATCCATTCACAGGGGCTTTGAGCGGGAGTCATGGGAACCAGTCA--------- 1441
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2943 GATGGAGTCCTCAATTGCACAATCCATTCACAGGGGCTTTGAGCGGGAGTCATGGGAACCAGTCAAGAGTTTAA 3016
Query 1442 -------------------------------------------------------------------------- 1441
Sbjct 3017 CCAGTAACCTACCCAATGTGAACCTACCCAATGTGAACCTTCCCAAAGTACCAAATCTACCAGTTAACATCCCT 3090
Query 1442 ----------------------------------------------------------------ATAATGGGTC 1451
||||||||||
Sbjct 3091 CTAGGCATCCCACAAATGCCTACTTTTTCGGCACCGTCATGGATGGCTGCTATATATGATGCGGATAATGGGTC 3164
Query 1452 AGGCACCTCAGAAGATCTGTTTTGGAAACTTGACGCCCTTCAGACCTTCATTCGGGACCTGCACTGGCCTGAAG 1525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3165 AGGCACCTCAGAAGATCTGTTTTGGAAACTTGACGCCCTTCAGACCTTCATTCGGGACCTGCACTGGCCTGAAG 3238
Query 1526 AAGAGTTTGGAAAGCACCTGGAACAACGGCTGAAGTTGATGGCAAGTGACATGATCGAATCTTGTGTCAAAAGA 1599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3239 AAGAGTTTGGAAAGCACCTGGAACAACGGCTGAAGTTGATGGCAAGTGACATGATCGAATCTTGTGTCAAAAGA 3312
Query 1600 ACCAGGATTGCATTTGAAGTTAAGCTGCAAAAAACCAGTCGATCAACAGATTTTCGAGTCCCACAGTCAATATG 1673
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3313 ACCAGGATTGCATTTGAAGTTAAGCTGCAAAAAACCAGTCGATCAACAGATTTTCGAGTCCCACAGTCAATATG 3386
Query 1674 CACCATGTTTAATGTTATGGTTGATGCCAAAGCTCAATCAACAAAACTTTGCAGCATGGAAATGGGCCAAGA-- 1745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3387 CACCATGTTTAATGTTATGGTTGATGCCAAAGCTCAATCAACAAAACTTTGCAGCATGGAAATGGGCCAAGAGT 3460
Query 1746 -------------GCATCAATACCATTCAAAAATAGACGAACTAATTGAAGAAACTGTTAAAGAAATGATAACA 1806
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3461 TTGCTAAAATGTGGCATCAATACCATTCAAAAATAGACGAACTAATTGAAGAAACTGTTAAAGAAATGATAACA 3534
Query 1807 CTCTTGGTTGCAAAGTTCGTTACTATCTTGGAAGGAGTGCTGGCAAAATTATCCAGATATGACGAAGGGACTTT 1880
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3535 CTCTTGGTTGCAAAGTTCGTTACTATCTTGGAAGGAGTGCTGGCAAAATTATCCAGATATGACGAAGGGACTTT 3608
Query 1881 GTTTTCTTCTTTTCTGTCATTTACCGTGAAGGCAGCTTCCAAATATGTGGATGTACCTAAACCCGGGATGGACG 1954
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3609 GTTTTCTTCTTTTCTGTCATTTACCGTGAAGGCAGCTTCCAAATATGTGGATGTACCTAAACCCGGGATGGACG 3682
Query 1955 TGGCCGACGCCTACGTGACTTTCGTCCGCCATTCTCAGGATGTCCTGCGTGATAAGGTCAATGGGGAGATGTAC 2028
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.||||||||||
Sbjct 3683 TGGCCGACGCCTACGTGACTTTCGTCCGCCATTCTCAGGATGTCCTGCGTGATAAGGTCAATGAGGAGATGTAC 3756
Query 2029 ATAGAAAGGTTATTTGATCAATGGTACAACAGCTCCATGAACGTGATCTGCACCTGGTTGACGGACCGGATGGA 2102
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3757 ATAGAAAGGTTATTTGATCAATGGTACAACAGCTCCATGAACGTGATCTGCACCTGGTTGACGGACCGGATGGA 3830
Query 2103 CTTACAGCTTCATATTTATCAGTTGAAAACACTAATTAGGATGGTAAAGAAAACCTACAGAGATTTCCGATTGC 2176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3831 CTTACAGCTTCATATTTATCAGTTGAAAACACTAATTAGGATGGTAAAGAAAACCTACAGAGATTTCCGATTGC 3904
Query 2177 AAGGGGTCCTGGACTCCACCTTAAACAGCAAGACCTATGAAACGATCCGGAACCGTCTCACTGTGGAGGAAGCC 2250
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3905 AAGGGGTCCTGGACTCCACCTTAAACAGCAAGACCTATGAAACGATCCGGAACCGTCTCACTGTGGAGGAAGCC 3978
Query 2251 ACAGCATCAGTGAGTGAAGGTGGGGGACTGCAGGGCATCAGCATGAAGGACAGCGATGAGGAAGACGAAGAAGA 2324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3979 ACAGCATCAGTGAGTGAAGGTGGGGGACTGCAGGGCATCAGCATGAAGGACAGCGATGAGGAAGACGAAGAAGA 4052
Query 2325 CGAT 2328
||||
Sbjct 4053 CGAT 4056
