Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_11319
- Subject:
- NM_001271602.1
- Aligned Length:
- 3155
- Identities:
- 739
- Gaps:
- 2410
Alignment
Query 1 ATGTTATGTTGGGGATATTGGTCTCTGGGCCAACCTGGTATCAGCACCAACCTGCAGGGAATTGTGGCTGAGCC 74
Sbjct 1 -------------------------------------------------------------------------- 0
Query 75 CCAGGTGTGTGGGTTCATATCTGACAGAAGTGTCAAGGAAGTGGCCTGTGGGGGAAACCACTCTGTGTTCCTGC 148
Sbjct 1 -------------------------------------------------------------------------- 0
Query 149 TGGAAGATGGGGAAGTTTACACATGTGGTTTGAACACCAAGGGGCAACTGGGCCATGAGAGGGAAGGAAACAAG 222
Sbjct 1 -------------------------------------------------------------------------- 0
Query 223 CCAGAACAAATTGGAGCTCTGGCAGATCAGCATATCATTCATGTGGCATGTGGCGAGTCCCACAGTCTGGCCCT 296
Sbjct 1 -------------------------------------------------------------------------- 0
Query 297 CAGTGACCGAGGCCAGCTGTTTTCTTGGGGTGCAGGGAGTGATGGTCAGCTAGGACTCATGACTACTGAGGATT 370
||||||||||||||||
Sbjct 1 ----------------------------------------------------------ATGACTACTGAGGATT 16
Query 371 CTGTGGCAGTGCCCAGGTTAATACAAAAGCTGAACCAGCAAACAATATTACAAGTTTCCTGTGGCAACTGGCAT 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 17 CTGTGGCAGTGCCCAGGTTAATACAAAAGCTGAACCAGCAAACAATATTACAAGTTTCCTGTGGCAACTGGCAT 90
Query 445 TGCTTGGCTCTTGCGGCTGATGGCCAGTTCTTCACCTGGGGAAAGAACAGCCATGGGCAGCTTGGCTTAGGGAA 518
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 91 TGCTTGGCTCTTGCGGCTGATGGCCAGTTCTTCACCTGGGGAAAGAACAGCCATGGGCAGCTTGGCTTAGGGAA 164
Query 519 GGAGTTCCCCTCCCAAGCCAGCCCACAGAGGGTGAGGTCCCTGGAGGGGATCCCACTGGCTCAGGTGGCTGCCG 592
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 165 GGAGTTCCCCTCCCAAGCCAGCCCACAGAGGGTGAGGTCCCTGGAGGGGATCCCACTGGCTCAGGTGGCTGCCG 238
Query 593 GAGGGGCTCACAGCTTTGCCCTGTCTCTCTCAGGAGCTGTTTTTGGCTGGGGGATGAATAATGCCGGGCAGCTA 666
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 GAGGGGCTCACAGCTTTGCCCTGTCTCTCTCAGGAGCTGTTTTTGGCTGGGGGATGAATAATGCCGGGCAGCTA 312
Query 667 GGGCTCAGTGATGAAAAAGATCGAGAATCTCCATGCCATGTAAAACTCTTACGCACGCAAAAAGTTGTCTATAT 740
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 313 GGGCTCAGTGATGAAAAAGATCGAGAATCTCCATGCCATGTAAAACTCTTACGCACGCAAAAAGTTGTCTATAT 386
Query 741 TAGTTGTGGAGAAGAACACACAGCAGTTCTCACAAAGAGTGGAGGTGTGTTTACCTTTGGCGCTGGTTCCTGTG 814
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 387 TAGTTGTGGAGAAGAACACACAGCAGTTCTCACAAAGAGTGGAGGTGTGTTTACCTTTGGCGCTGGTTCCTGTG 460
Query 815 GGCAACTTGGACACGACTCCATGAATGATGAGGTTAACCCTAGAAGAGTTCTAGAGCTGATGGGTAGTGAAGTA 888
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 461 GGCAACTTGGACACGACTCCATGAATGATGAGGTTAACCCTAGAAGAGTTCTAGAGCTGATGGGTAGTGAAGTA 534
Query 889 ACTCAAATTGCTTGTGGCAGACAACATACCCTAGCCTTCGTGCCTTCTTCTGGACTCATCTATGCATTTGGTTG 962
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 535 ACTCAAATTGCTTGTGGCAGACAACATACCCTAGCCTTCGTGCCTTCTTCTGGACTCATCTATGCATTTGGTTG 608
Query 963 TGGAGCAAGAGGTCAATTAGGAACTGGGCACACTTGTAATGTTAAGTGCCCATCTCCTGTCAAGGGTTACTGGG 1036
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 609 TGGAGCAAGAGGTCAATTAGGAACTGGGCACACTTGTAATGTTAAGTGCCCATCTCCTGTCAAGGGTTACTGGG 682
Query 1037 CTGCCCACAGTGGCCAGCTTTCAGCCCGAGCT---------------------GGTAAGAATGATTGTCTCTGG 1089
|||||||||||||||||||||||||||||||| |.||||.| |||..|||||||
Sbjct 683 CTGCCCACAGTGGCCAGCTTTCAGCCCGAGCTGATCGCTTTAAATATCATATCGTTAAGCA-GATCTTCTCTGG 755
Query 1090 A-----------ATTTAAAGGTATTT------------------------------------------------ 1104
| .||| |||.||
Sbjct 756 AGGAGACCAGACTTTT----GTACTTTGCTCCAAATACGAGAATTATTCTCCTGCTGTTGACTTCAGGACTATG 825
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 826 AACCAAGCACATTATACCAGTTTAATAAATGATGAAACCATAGCAGTTTGGAGACAAAAACTCTCAGAACACAA 899
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 900 CAATGCAAATACAATCAATGGTGTTGTTCAGATATTATCTTCTGCAGCCTGTTGGAATGGAAGTTTTCTTGAAA 973
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 974 AAAAAATTGATGAACATTTTAAAACGAGTCCCAAAATCCCTGGGATTGACCTGAACTCAACTAGGGTGTTATTT 1047
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 1048 GAGAAGTTAATGAACTCTCAGCACTCCATGATTCTAGAACAGATTTTGAACAGTTTTGAAAGTTGTCTGATTCC 1121
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 1122 CCAGTTGTCAAGCTCACCACCAGATGTTGAAGCCATGAGAATCTATTTAATACTACCTGAGTTTCCCCTACTCC 1195
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 1196 AGGATTCCAAGTATTATATAACATTGACTATTCCCTTGGCTATGGCCATTCTTCGGCTGGATACAAACCCCAGC 1269
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 1270 AAAGTACTAGATAACTGGTGGTCTCAGGTATGCCCGAAATATTTCATGAAGCTGGTAAACCTCTATAAAGGTGC 1343
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 1344 AGTCCTTTATCTACTGAGGGGAAGAAAGACATTCTTAATTCCCGTACTGTTTAACAATTATATCACAGCAGCTC 1417
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 1418 TCAAACTCTTGGAGAAGTTATATAAGGTAAATCTTAAAGTGAAGCATGTGGAATATGATACATTTTACATTCCT 1491
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 1492 GAGATTTCCAATCTCGTGGACATTCAGGAAGACTACCTCATGTGGTTCTTGCATCAAGCAGGGATGAAGGCTAG 1565
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 1566 ACCATCAATAATACAGGATACTGTAACACTTTGTTCCTACCCTTTCATCTTTGATGCCCAAGCCAAGACCAAAA 1639
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 1640 TGTTACAGACAGATGCTGAACTACAGATGCAGGTGGCAGTCAATGGAGCCAACCTGCAGAATGTCTTCATGCTT 1713
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 1714 CTCACCCTGGAGCCTCTGCTGGCCAGAAGCCCCTTCCTGGTCCTTCACGTTCGCAGGAACAACCTTGTTGGAGA 1787
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 1788 TGCCCTAAGAGAGCTGAGCATTCATTCTGATATTGATTTGAAAAAGCCTCTCAAAGTAATCTTTGATGGTGAAG 1861
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 1862 AAGCAGTGGATGCCGGTGGTGTTACAAAGGAATTTTTTCTTTTGCTGTTAAAAGAACTTTTGAATCCCATCTAT 1935
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 1936 GGAATGTTTACCTACTATCAAGATTCAAATCTCTTGTGGTTTTCAGACACGTGTTTTGTAGAGCACAACTGGTT 2009
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 2010 TCACTTGATTGGTATAACCTGTGGACTAGCTATCTACAACTCCACTGTGGTCGATCTCCACTTCCCATTGGCTC 2083
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 2084 TCTACAAGAAGTTACTCAATGTAAAGCCTGGCTTGGAAGACTTAAAGGAGTTGTCACCCACTGAAGGAAGGAGT 2157
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 2158 CTCCAAGAGCTTTTAGATTACCCCGGGGAGGATGTGGAGGAGACTTTCTGCCTCAACTTCACGATCTGCCGAGA 2231
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 2232 AAGCTATGGAGTGATTGAACAGAAGAAGCTGATACCTGGGGGAGATAATGTAACTGTGTGCAAGGATAACAGGC 2305
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 2306 AGGAATTTGTGGATGCTTATGTGAATTATGTCTTCCAAATCTCAGTTCATGAATGGTACACAGCCTTCTCTAGT 2379
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 2380 GGCTTCCTAAAGGTGTGTGGTGGCAAAGTACTTGAGCTCTTCCAGCCTTCAGAACTGAGGGCTATGATGGTGGG 2453
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 2454 GAACAGCAACTACAACTGGGAAGAACTGGAAGAGACTGCCATCTACAAGGGAGATTACTCGGCCACACATCCCA 2527
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 2528 CTGTAAAACTATTTTGGGAAACATTTCATGAGTTTCCATTGGAAAAGAAGAAGAAGTTTCTCTTGTTCCTGACA 2601
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 2602 GGCAGCGATCGGATTCCCATCTACGGCATGGCCAGTCTGCAGATTGTCATCCAGTCCACAGCCAGCGGGGAGGA 2675
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 2676 GTACTTGCCGGTGGCCCACACTTGCTACAACCTTCTTGACCTCCCCAAGTACAGCAGCAAAGAGATTCTGAGTG 2749
Query 1105 ----------------------------------------------- 1104
Sbjct 2750 CCCGGCTGACCCAGGCCCTTGACAACTATGAAGGGTTTAGTTTGGCC 2796
