Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_11319
- Subject:
- NM_001361966.1
- Aligned Length:
- 3155
- Identities:
- 973
- Gaps:
- 2056
Alignment
Query 1 ATGTTATGTTGGGGATATTGGTCTCTGGGCCAACCTGGTATCAGCACCAACCTGCAGGGAATTGTGGCTGAGCC 74
||||||||||||||.||||||||||||||||||||.||.||||||.||||||||||.|||||.|||||||||||
Sbjct 1 ATGTTATGTTGGGGGTATTGGTCTCTGGGCCAACCAGGCATCAGCTCCAACCTGCAAGGAATCGTGGCTGAGCC 74
Query 75 CCAGGTGTGTGGGTTCATATCTGACAGAAGTGTCAAGGAAGTGGCCTGTGGGGGAAACCACTCTGTGTTCCTGC 148
|||||||||..|.||..||||.||||||||..|||||||||||||.||.||.|||||||||||.||||||||||
Sbjct 75 CCAGGTGTGCCGCTTTGTATCGGACAGAAGCATCAAGGAAGTGGCGTGCGGAGGAAACCACTCCGTGTTCCTGC 148
Query 149 TGGAAGATGGGGAAGTTTACACATGTGGTTTGAACACCAAGGGGCAACTGGGCCATGAGAGGGAAGGAAACAAG 222
||||.||.|||||.||||||||.|||||..|.||||||||||||||.||.|||||||||||||||||.||||||
Sbjct 149 TGGAGGACGGGGAGGTTTACACGTGTGGAGTAAACACCAAGGGGCAGCTTGGCCATGAGAGGGAAGGTAACAAG 222
Query 223 CCAGAACAAATTGGAGCTCTGGCAGATCAGCATATCATTCATGTGGCATGTGGCGAGTCCCACAGTCTGGCCCT 296
|||||||||||||||||..|.||.||||||||||||||.||.|||||||||||||||||.|||||||||||.||
Sbjct 223 CCAGAACAAATTGGAGCATTAGCTGATCAGCATATCATACACGTGGCATGTGGCGAGTCACACAGTCTGGCTCT 296
Query 297 CAGTGACCGAGGCCAGCTGTTTTCTTGGGGTGCAGGGAGTGATGGTCAGCTAGGACTCATGACTACTGAGGATT 370
|||||||||.||.|||||||||||||||||||||||.||||||||.||.||.||.|||||||||||||||||||
Sbjct 297 CAGTGACCGGGGTCAGCTGTTTTCTTGGGGTGCAGGAAGTGATGGCCAACTGGGCCTCATGACTACTGAGGATT 370
Query 371 CTGTGGCAGTGCCCAGGTTAATACAAAAGCTGAACCAGCAAACAATATTACAAGTTTCCTGTGGCAACTGGCAT 444
|.|||||.|||||||||.||||.||.||.|||||||||||.||.|||||||||||||||||||||||||||||.
Sbjct 371 CCGTGGCTGTGCCCAGGCTAATCCAGAAACTGAACCAGCAGACCATATTACAAGTTTCCTGTGGCAACTGGCAC 444
Query 445 TGCTTGGCTCTTGCGGCTGATGGCCAGTTCTTCACCTGGGGAAAGAACAGCCATGGGCAGCTTGGCTTAGGGAA 518
|||||||||||.||.||||||||||||||||||||.|||||.||||||||||||||.|||||.||..|.|||||
Sbjct 445 TGCTTGGCTCTGGCAGCTGATGGCCAGTTCTTCACATGGGGGAAGAACAGCCATGGACAGCTGGGACTGGGGAA 518
Query 519 GGAGTTCCCCTCCCAAGCCAGCCCACAGAGGGTGAGGTCCCTGGAGGGGATCCCACTGGCTCAGGTGGCTGCCG 592
||||||||||||||||.|||||||||||||||||||.||..||||.||||||||.|||||||||||||||||.|
Sbjct 519 GGAGTTCCCCTCCCAAACCAGCCCACAGAGGGTGAGATCTTTGGAAGGGATCCCGCTGGCTCAGGTGGCTGCAG 592
Query 593 GAGGGGCTCACAGCTTTGCCCTGTCTCTCTCAGGAGCTGTTTTTGGCTGGGGGATGAATAATGCCGGGCAGCTA 666
||||||||||.||||||||||||||||||||.||||||||||||||||||||.|||||||||||.|||||||||
Sbjct 593 GAGGGGCTCATAGCTTTGCCCTGTCTCTCTCGGGAGCTGTTTTTGGCTGGGGAATGAATAATGCAGGGCAGCTA 666
Query 667 GGGCTCAGTGATGAAAAAGATCGAGAATCTCCATGCCATGTAAAACTCTTACGCACGCAAAAAGTTGTCTATAT 740
||||||||||||||||||||.||.||.|||||||||||.||.||.||.||||||||.||.|||||.||||||||
Sbjct 667 GGGCTCAGTGATGAAAAAGACCGGGAGTCTCCATGCCACGTGAAGCTTTTACGCACACAGAAAGTCGTCTATAT 740
Query 741 TAGTTGTGGAGAAGAACACACAGCAGTTCTCACAAAGAGTGGAGGTGTGTTTACCTTTGGCGCTGGTTCCTGTG 814
||||||||||||.||.||||||||||||||||||||||||||.||.||||||||||||||.|||||.|||||||
Sbjct 741 TAGTTGTGGAGAGGAGCACACAGCAGTTCTCACAAAGAGTGGGGGCGTGTTTACCTTTGGTGCTGGCTCCTGTG 814
Query 815 GGCAACTTGGACACGACTCCATGAATGATGAGGTTAACCCTAGAAGAGTTCTAGAGCTGATGGGTAGTGAAGTA 888
||||.||||||||.|||||..||||||||||.|||||.||.||||||||.||.|||||||||||.|||||||||
Sbjct 815 GGCAGCTTGGACATGACTCGGTGAATGATGAAGTTAATCCGAGAAGAGTCCTGGAGCTGATGGGCAGTGAAGTA 888
Query 889 ACTCAAATTGCTTGTGGCAGACAACATACCCTAGCCTTCGTGCCTTCTTCTGGACTCATCTATGCATTTGGTTG 962
|||||.|||||||||||||||||.||.||.||||||.|.|||||||||||||||||||||||||||||||||||
Sbjct 889 ACTCAGATTGCTTGTGGCAGACAGCACACTCTAGCCCTTGTGCCTTCTTCTGGACTCATCTATGCATTTGGTTG 962
Query 963 TGGAGCAAGAGGTCAATTAGGAACTGGGCACACTTGTAATGTTAAGTGCCCATCTCCTGTCAAGGGTTACTGGG 1036
||||||.|.||||||..|.|||||.||.||.||.||||||||.|||||||||||||||||.|||||..||||||
Sbjct 963 TGGAGCTAAAGGTCAGCTGGGAACCGGACATACATGTAATGTCAAGTGCCCATCTCCTGTGAAGGGCCACTGGG 1036
Query 1037 CTGCCCACAGTGGCCAGCTTTCAGC-----CCGA--GCTGGTAAGAAT--------------GATTGTCTCTGG 1089
||||||||||..|.||||||||||| |||| ||| .||||.|| |||..|||||||
Sbjct 1037 CTGCCCACAGCAGTCAGCTTTCAGCTCGCGCCGATCGCT-TTAAGTATCGTGTCGTTAAGCAGATCTTCTCTGG 1109
Query 1090 A-----------ATTTAAAGGTATTT------------------------------------------------ 1104
| .||| |||.||
Sbjct 1110 AGGGGACCAGACTTTT----GTACTTTGCTCCACGTATGAGAATTCTTCTCCTGCTGTTGACTTCAGAACTGTG 1179
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 1180 AACCAAACACATTATACCAACTTAATAAATGATGAAACCATAGCAGTTTGGAGACAAAAACTCACAGAACACAA 1253
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 1254 CAACGCAAATACTGTCAATGGTGTTGTTCAGATACTGTCTTCTGCAGCTTGTTGGAATGGAAGCTTTCTGGAAA 1327
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 1328 AAAAAATTGATGAACATTTTAAAACTAGTCCCAAAATCCCCGGGATTGACCTGAACTCAACTAGGATTTTATTT 1401
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 1402 GAGAAGTTAATGCACTCTCAGCACTCCATGATTCTAGAACAGATATTAAACAGCTTTGAAAGTTGCCTCATTCC 1475
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 1476 CCAGTTATCAAGTTCACCCCCAGATGTGGAAGCAATGAGAATCTATTTAATCCTACCGGAGTTTCCGCTGCTTC 1549
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 1550 AGGACTCTAAGTATTACATAACGCTGACCATTCCCCTGGCAATGGCCATTCTGCGGCTGGAAACAAACCCTAGC 1623
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 1624 AAAGTATTAGATAACTGGTGGTCTCAGGCATGCCCCAAATATTTCATGAAGCTGGTAACCCTGTATAAAGGTGC 1697
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 1698 CGTCCTTTACCTCCTAAGGGGAAGGAAGACATTCCTAATCCCGGTACTGTTTAACAACTACATGACTGCAACCC 1771
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 1772 TCAAGCTTCTGGAGAAGTTGTACAAGGTAAATCTTAAGGTGAAGCATGTGGAATACGATAAGTTTTATATCCCT 1845
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 1846 GAGATTTCTAGTCTTGTGGACATTCAGGAAGACTACCTCATGTGGTTTTTGCATCAATCTGGGATGAAGGCTAG 1919
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 1920 ACCCTCTATCATGCAGGATGCTGTAACCCTTTGTTCCTATCCTTTCATCTTTGATGCCCAAGCTAAGACCAAGA 1993
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 1994 TGCTGCAGACTGATGCCGAGTTACAGATGCAGGTGGCAGTCAATGGAGCCAACCTGCAGAATGTCTTCATGCTT 2067
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 2068 CTTACCCTGGAGCCTCTGCTGGCCAGAAGCCCCTTCCTGGTCCTCCATGTCCGTAGGAACCACCTTGTTGGAGA 2141
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 2142 TGCCCTGAGAGAGCTGAGCATTCACTCTGACATTGACTTGAAGAAGCCTCTCAAAGTAATCTTTGATGGGGAAG 2215
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 2216 AAGGAGTAGATGCTGGTGGTGTTACGAAGGAGTTCTTTCTTTTGCTATTAAAAGAACTTTTGAATCCCATTTAT 2289
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 2290 GGGATGTTTACCTACTATCAAGATTCAAATCTCTTGTGGTTTTCAGATACATGTTTTGTAGAGCACAACTGGTT 2363
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 2364 TCACTTGATTGGCATAACCTGTGGATTAGCTATCTACAACTCCACTGTGGTTGACCTCCACTTCCCGTTGGCTC 2437
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 2438 TCTACAAGAAGTTACTGAATGTAAAGCCCAGCTTGGAAGATTTGAAGGAACTGTCACCAACTGAAGGAAGGAGT 2511
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 2512 CTTCAAGAGCTTCTAGATTACCCCGGTGAAGACATCGAGGAGACCTTTTGCCTCAACTTCACGGTGTGCCGAGA 2585
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 2586 AAGCTATGGGGTGATAGAACAGAAGAAGTTGATACCCGGGGGAGACAGAGTGGCCGTGTGCAAAGACAACAGGC 2659
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 2660 AAGAATTCGTGGACGCTTATGTGAATTACATCTTCCAAATTTCGGTTCACGAGTGGTACACAGCCTTCTCCAGT 2733
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 2734 GGCTTCCTAAAGGTGTGTGGTGGCAAAGTCCTCGAGCTCTTCCAGCCTGCAGAACTGAGGGCCATGATGGTGGG 2807
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 2808 GAACAGCAACTATGACTGGGAAGAGCTGGAAGAGACTGCTGTCTACAGGGGTGATTATTCAAGCACACATCCCA 2881
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 2882 CTGTGAAACTCTTCTGGGAGACATTCCACGAGTTCCCATTGGAGAAGAAGAAGAAGTTTCTTTTGTTCCTAACA 2955
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 2956 GGCAGTGACCGGATTCCCATCTATGGCATGGCCAGTCTTCAGATCATCATCCAGTCCACAGCCACTGGGGAGGA 3029
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 3030 ATACTTACCCGTGGCCCATACCTGCTACAACCTTCTTGACCTCCCTAAGTATAGCAGCAAAGAGATCATGAAGG 3103
Query 1105 ----------------------------------------------- 1104
Sbjct 3104 CTCGGCTGACCCAGGCCCTCGACAACTATGAGGGTTTTAGTTTGGCC 3150
