Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_11320
- Subject:
- XR_001746413.1
- Aligned Length:
- 4019
- Identities:
- 699
- Gaps:
- 3313
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 TTGATTCAATTCCTCACTTGAATAATTCCACACCTCTAGTGGACCCCTCAGTATATGGATACGGAGTACAAAAA 74
Query 1 ----------ATGCCTCCTA-----TAGGTAACCAGTTAGGGGCCTTGGTACATCAAAGGACGGTAATAACGGA 59
||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 75 CGGCCCTTGGATG------ATGGAGTAGGTAACCAGTTAGGGGCCTTGGTACATCAAAGGACGGTAATAACGGA 142
Query 60 AGAATTCAAAGTGCCTGACAAAATGGTTGGATTTATTATCGGCAGGGGAGGTGAGCAGATTTCACGGATTCAAG 133
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 143 AGAATTCAAAGTGCCTGACAAAATGGTTGGATTTATTATCGGCAGGGGAGGTGAGCAGATTTCACGGATTCAAG 216
Query 134 CAGAATCTGGTTGCAAAATTCAGATTGCTTCAGAGAGTTCTGGGATTCCAGAGAGGCCCTGTGTACTTACCGGA 207
|||||||||||||||||||||||||||||||||
Sbjct 217 CAGAATCTGGTTGCAAAATTCAGATTGCTTCAG----------------------------------------- 249
Query 208 ACCCCAGAAAGTATTGAACAAGCCAAACGGCTCCTGGGACAGATTGTGGACCGCTGTCGAAATGGACCTGGCTT 281
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 250 -----------------ACAAGCCAAACGGCTCCTGGGACAGATTGTGGACCGCTGTCGAAATGGACCTGGCTT 306
Query 282 TCATAATGACATAGACAGCAACAGCACAATCCAGGAGATTCTCATTCCCGCATCTAAAGTGGGTCTGGTCATCG 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 307 TCATAATGACATAGACAGCAACAGCACAATCCAGGAGATTCTCATTCCCGCATCTAAAGTGGGTCTGGTCATCG 380
Query 356 GCAGAGGAGGGGAAACAATCAAGCAGTTGCAGGAGCGGACAGGGGTGAAGATGGTCATGATCCAGGATGGCCCA 429
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 381 GCAGAGGAGGGGAAACAATCAAGCAGTTGCAGGAGCGGACAGGGGTGAAGATGGTCATGATCCAGGATGGCCCA 454
Query 430 TTGCCCACGGGAGCAGACAAGCCTCTTCGTATCACTGGAGATGCATTTAAAGTACAGCAAGCAAGAGAAATGGT 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 455 TTGCCCACGGGAGCAGACAAGCCTCTTCGTATCACTGGAGATGCATTTAAAGTACAGCAAGCAAGAGAAATGGT 528
Query 504 ACTAGAGATTATCCGAGAAAAAGACCAAGCTGACTTTCGGGGTGTACGCGGCGATTTCAACTCTCGAATGGGAG 577
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 529 ACTAGAGATTATCCGAGAAAAAGACCAAGCTGACTTTCGGGGTGTACGCGGCGATTTCAACTCTCGAATGGGAG 602
Query 578 GAGGCAGTATAGAGGTATCTGTGCCTAGGTTTGCTGTGGGGATTGTAATAGGAAGAAACGGGGAAATGATCAAA 651
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 603 GAGGCAGTATAGAGGTATCTGTGCCTAGGTTTGCTGTGGGGATTGTAATAGGAAGAAACGGGGAAATGATCAAA 676
Query 652 AAGATCCAGAATGATGCTGGTGTGAGGATTCAGTTTAAACCAGATGATGGGATTAGTCCAGAATATTACAGA-C 724
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct 677 AAGATCCAGAATGATGCTGGTGTGAGGATTCAGTTTAAACCAGATGATGGGATTAGTCCAGAA------AGAGC 744
Query 725 AG--CAGGTC-----------------------------------------------GCT--TTC-TACGG--- 743
.| |||||| ||| ||| |||.|
Sbjct 745 TGCCCAGGTCATGGGCCCTCCGGATCGGTGTCAGCATGCAGCGCATATCATCAGCGAGCTGATTCTTACAGCCC 818
Query 744 -----ACAGACG--TTAGGGCAGGC---GCAGGCCCACAGCCAGGAGCAG------------------------ 783
|.||||| ||.|| |||| |||| |||||||..|.||
Sbjct 819 AGGAAAGAGACGGCTTTGG--AGGCCTGGCAG-----CAGCCAGAGGAAGAGGTCGTGGCCGTGGCGACTGGAG 885
Query 784 -------------------------------------------------------------------------- 783
Sbjct 886 CGTGGGAGCCCCTGGTGGCGTCCAGGAGATAACATACACGGTGCCAGCCGATAAGTGTGGCCTCGTCATAGGCA 959
Query 784 -------------------------------------------------------------------------- 783
Sbjct 960 AAGGGGGTGAGAACATCAAAAGCATCAACCAGCAGTCAGGGGCGCACGTGGAGCTTCAGAGGAACCCCCCTCCC 1033
Query 784 -------------------------------------------------------------------------- 783
Sbjct 1034 AACAGCGACCCCAACCTGCGGAGATTCACCATCAGGGGGGTTCCCCAGCAGATCGAGGTGGCCAGGCAGCTCAT 1107
Query 784 -------------------------------------------------------------------------- 783
Sbjct 1108 AGATGAGAAAGTTGGCGGGACCAATCTCGGAGCACCTGGAGCCTTCGGACAGAGTCCATTCAGCCAGCCACCTG 1181
Query 784 -------------------------------------------------------------------------- 783
Sbjct 1182 CCCCACCTCATCAAAATACCTTTCCTCCAAGGAGCTCCGGGTGCTTCCCAAACATGGCTGCCAAGGTGAATGGG 1255
Query 784 -------------------------------------------------------------------------- 783
Sbjct 1256 AACCCCCACAGCACCCCTGTGAGTGGTCCTCCGGCCTTTCTGACCCAGGGCTGGGGCAGCACCTACCAGGCGTG 1329
Query 784 -------------------------------------------------------------------------- 783
Sbjct 1330 GCAGCAGCCCACACAGCAGGTCCCAAGGGTTTTGCAGTGGAGAACCGGTTTGGGTTGGTGAAATACTGTTTGGC 1403
Query 784 -------------------------------------------------------------------------- 783
Sbjct 1404 GGCGAAGTCCTGCTTGCCGGCGCCCTCCGCGTCCGAGGGAAGAGTGTTTGCTGCCTGTGTCCCTCTTTCGCCCT 1477
Query 784 -------------------------------------------------------------------------- 783
Sbjct 1478 GCCCCTGTGGGAGGAAGCGGGGCGTCTCCTTCCCTCCTTCCTCCCGCTGCTTGCTTCTTCCCCACGCTGCTCCT 1551
Query 784 -------------------------------------------------------------------------- 783
Sbjct 1552 CAGTATGCAGTAAAGTGAACTAGTGGAGAAAGCATTTGGCTGCATGCTCTCTGCAGTGGTTTGCCCTTCCTCCC 1625
Query 784 -------------------------------------------------------------------------- 783
Sbjct 1626 TGCTTCAGGCTACAATCCTTACAGGAGACGAGACAGTGAGGGGGTCTTTTGTGGGCCTTGGCAGGTGGACACCT 1699
Query 784 -------------------------------------------------------------------------- 783
Sbjct 1700 GAGCCAGCCCCGGCCTGGGCAGAAGGAGAGGTCCTGACCCGCCACTGTGGTCAAGTCTTTGAACCCCCTCTTGT 1773
Query 784 -------------------------------------------------------------------------- 783
Sbjct 1774 GCCTGGCAGGGTGCTGAGGCTCTGTTCCCCCATGCTGGCTGTTTCTCCGCGTCCCCCAGTCTTCACTGCCCACA 1847
Query 784 -------------------------------------------------------------------------- 783
Sbjct 1848 TAGCCTAGAGGGTGAACCCAGGGTCCTGCACAGAAGAGAAGGGCTGGACCACCCAAACACATGCACCCCCTTTC 1921
Query 784 -------------------------------------------------------------------------- 783
Sbjct 1922 CCTCTGCCCTACCCCAGCTGGCCTGAGGCTGGACAGGGTCCAGGAGCCCACTGGTGCTGCCTACCCCTGCTCCA 1995
Query 784 -------------------------------------------------------------------------- 783
Sbjct 1996 CATGGCCCCTCCACTTCCCTTGGTCCAGAGGCACAGCCCCCAGGCCTTGAACAGAGGGCCACGCGAAGAGAGTG 2069
Query 784 -------------------------------------------------------------------------- 783
Sbjct 2070 GTCAGCAGCCTCTGGAGTCTTTGTCCTTTGGAAGGCTGATTGGGGAGCCTCAGAACAGCAGTGGCTGTGGCCGT 2143
Query 784 -------------------------------------------------------------------------- 783
Sbjct 2144 CAAGCTTGCGTCTCCATCTGAAGAGGGTCAGGCTAGCCTTGCTAGTTGCCTCGTGTGCCCAGCCCCACCCTTAC 2217
Query 784 -------------------------------------------------------------------------- 783
Sbjct 2218 AGTGATCTTAGTTACACCCCTTCCCCCAGCCCTGCCAGCTGCCACCTCCTTCCCAGGCAGGGCTGCGGAGCCGT 2291
Query 784 -------------------------------------------------------------------------- 783
Sbjct 2292 GTGTGGCCAGGAGCGAGGTGGAGGAGTGCAGGGCAGGGCCTGCAGCTGGCGGGCTGGGGCCGAGGCTGTGAGGA 2365
Query 784 -------------------------------------------------------------------------- 783
Sbjct 2366 GCCCGTAAGGCCTGACTGCTTTTGTGTTCTTCGCACAGGCCAGCAGAGCCAGCCGCAGAGCAGCCAGCCCAACT 2439
Query 784 -------------------------------------------------------------------------- 783
Sbjct 2440 ACAGCAAGGCCTGGGAAGACTATTACAAAAAACAGAGTCACGCCGCCAGCGCTGCTCCTCAGGCCAGCTCCCCA 2513
Query 784 -------------------------------------------------------------------------- 783
Sbjct 2514 CCGGACTACACAATGGCCTGGGCAGAATATTACAGACAGCAGGTCGCTTTCTACGGACAGACGTTAGGGCAGGC 2587
Query 784 -------------------------------------------------------------------------- 783
Sbjct 2588 GCAGGCCCACAGCCAGGAGCAGTAGGACAGCGTCCTCGTGGCCAACTCTCCCCTCAAAATCATTGTCAAAGAAA 2661
Query 784 -------------------------------------------------------------------------- 783
Sbjct 2662 ACCTATTTGTAACAGAGGTTTTTACATTTGCAAACCTTTTGATGAAGAACTGTTGTTTTGTTCTGTGAAACACT 2735
Query 784 -------------------------------------------------------------------------- 783
Sbjct 2736 ATATTTAGATTAACGGAATTTTTCTAAAAATCAGGAAAATTAGTTACTAAAAATTGCTGATCATTTTTGTTTCA 2809
Query 784 -------------------------------------------------------------------------- 783
Sbjct 2810 TTATTTTTGTTATTTCAAATGTATAAGCTCTGGGATTCTTTTTGGAGCAATACCTACAAAGTCAGGCACCAGAA 2883
Query 784 -------------------------------------------------------------------------- 783
Sbjct 2884 TGTGCCTCAGAGCTGTGACATTTCAACATGATGGTTTTGGTTTGGTTTGGTTTTGTGTCCTTTTTATTTGCAGT 2957
Query 784 -------------------------------------------------------------------------- 783
Sbjct 2958 TTTTTCTGTTGCAACAGAAAGTGGCTTGGAAGTCTTAGGTGGTATGTAACAAATTCTTTTTAAAAATTTTAAAG 3031
Query 784 -------------------------------------------------------------------------- 783
Sbjct 3032 CAGTATTTAAGTATTCTTAAATGTGTAAATTCATTTAATGTTTTACTTCTAATTTCTTGTATCTTGGCTGTCTG 3105
Query 784 -------------------------------------------------------------------------- 783
Sbjct 3106 GTTTTATTGCATTTTTAAAAAAACTGAACTATTATGTATTGTAATGAATGATGTGAATTCTGAACTGAGACAGA 3179
Query 784 -------------------------------------------------------------------------- 783
Sbjct 3180 TAATTGTATTGCTGTCCAACAGGGGTTGGGAGGGGCATTTTGTAGGGTTTGTATAATTTCTAGAGTTCGAAAGG 3253
Query 784 -------------------------------------------------------------------------- 783
Sbjct 3254 GGTAATATAAAAATGTGCTCGTGTGTTTAGCCTACGTTTTTCTCATGCCTCCATTACCAGTTGCAATTGTGTAT 3327
Query 784 -------------------------------------------------------------------------- 783
Sbjct 3328 CTAAGACCTCCAAGCTTGTTTTTAAAACAAAACAAAAAACCTTTCTCTATTATCTCAGAAATATAAATACTGTT 3401
Query 784 -------------------------------------------------------------------------- 783
Sbjct 3402 ATTTTTAATATTAAGAAATTCAATATAACTTTTAACACACACTGTGGAACATTAAACCGTATAAAAATGTAGTT 3475
Query 784 -------------------------------------------------------------------------- 783
Sbjct 3476 ATAACTATTTTTAATTCCAAGGTGTTGTTTGCTTTTTTCTTTTAAATATTTTCTTAATATTTTGTCAGATTAAC 3549
Query 784 -------------------------------------------------------------------------- 783
Sbjct 3550 TAGATGAATAAATAAATCTAGTATTAACCGCATTATGAATTAAATAATTTTGATTTAATGAAAGGGATAATATG 3623
Query 784 -------------------------------------------------------------------------- 783
Sbjct 3624 ATTTCCAGTGTTTACTGTAGTGTATCTTGTACAGATAACATGTATTTTTAAAGGAAAAAAAACGGAATTGAAGC 3697
Query 784 -------------------------------------------------------------------------- 783
Sbjct 3698 TATTTTTTCTTGCATTTCTAATTGACCTGAGGGACATTCCGTTTGAAATGTACTGAAGTTACAGTTTCTGGTTT 3771
Query 784 -------------------------------------------------------------------------- 783
Sbjct 3772 TTTCTCCTTATTTTTCTTATAATGCTTGAAATGTCTAACTATTAAAAAAGACAATTGGAAAATGTTATGCATGG 3845
Query 784 -------------------------------------------------------------------------- 783
Sbjct 3846 GGTTTTTAAGAAAACAAAGTGTTCTTTTTATTTGACTGACAATTCATTTTACACTCTATATAATAAAATCTCCA 3919
Query 784 ----------------------- 783
Sbjct 3920 CAAGGCATCTTGTGGGCAAAGTC 3942
