Nucleotide Global Alignment

Description

Query:
ccsbBroad304_11320
Subject:
XR_001783042.1
Aligned Length:
3768
Identities:
627
Gaps:
3062

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  ACCCCGCCTCACAGACGCTGCTTTCCCCCAACCTATCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTCTCCCTCT  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  GAGCTAGCAGTGCCTTCCCTTCGCTTCCCTTCCGCCGGAAGTGGGGCGACTTTCCCTTTCCGGCTACGGGTCCC  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  GGAGCGGAGTGGGAGGCCGGACCGGGGGAGCCGAGCGACGGCGGTGGCGGTGGGCTTGGCTATGGCGGAGCTGG  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  TGCAGGGGCAGAGCGCTCCGGTGGGCATGAAGGCTGAGGGCTTTGTGGATGCCCTGCACCGGGTCCGGCAGATT  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  GCTGCTAAAATCGATTCAATTCCTCACTTGAATAATTCCACACCTCTGGTGGACCCCTCAGTGTACGGATACGG  370

Query    1  --------------------ATGCCTCCTA-----TAGGTAACCAGTTAGGGGCCTTGGTACATCAAAGGACGG  49
                                |||      |     |||||||||||||||||||||||||||||||||||.|.|
Sbjct  371  AGTACAGAAGCGGGCCCTGGATG------ATGGAGTAGGTAACCAGTTAGGGGCCTTGGTACATCAAAGGGCAG  438

Query   50  TAATAACGGAAGAATTCAAAGTGCCTGACAAAATGGTTGGATTTATTATCGGCAGGGGAGGTGAGCAGATTTCA  123
            |||||||.||||||||||||||||||||.||||||||||||||||||||.||||||||||||||||||||||||
Sbjct  439  TAATAACAGAAGAATTCAAAGTGCCTGATAAAATGGTTGGATTTATTATTGGCAGGGGAGGTGAGCAGATTTCA  512

Query  124  CGGATTCAAGCAGAATCTGGTTGCAAAATTCAGATTGCTTCAGAGAGTTCTGGGATTCCAGAGAGGCCCTGTGT  197
            ||.|||||||||||||||||.|||||||||||||||||.||||                               
Sbjct  513  CGAATTCAAGCAGAATCTGGGTGCAAAATTCAGATTGCCTCAG-------------------------------  555

Query  198  ACTTACCGGAACCCCAGAAAGTATTGAACAAGCCAAACGGCTCCTGGGACAGATTGTGGACCGCTGTCGAAATG  271
                                       |||||||||||||||||||||.|||||.|||||.||.|||||.||||
Sbjct  556  ---------------------------ACAAGCCAAACGGCTCCTGGGGCAGATCGTGGATCGATGTCGGAATG  602

Query  272  GACCTGGCTTTCATAATGACATAGACAGCAACAGCACAATCCAGGAGATTCTCATTCCCGCATCTAAAGTGGGT  345
            |.|||||||||||.||.||.||.||..|||||||||||||||||||..||||.||.||.||||||||||||||.
Sbjct  603  GGCCTGGCTTTCACAACGATATGGATGGCAACAGCACAATCCAGGAACTTCTTATCCCTGCATCTAAAGTGGGG  676

Query  346  CTGGTCATCGGCAGAGGAGGGGAAACAATCAAGCAGTTGCAGGAGCGGACAGGGGTGAAGATGGTCATGATCCA  419
            |||||||||||||.||||||||||||.||||||||||||||||||||.||.||.|||||.||||||||||||||
Sbjct  677  CTGGTCATCGGCAAAGGAGGGGAAACGATCAAGCAGTTGCAGGAGCGAACGGGTGTGAAAATGGTCATGATCCA  750

Query  420  GGATGGCCCATTGCCCACGGGAGCAGACAAGCCTCTTCGTATCACTGGAGATGCATTTAAAGTACAGCAAGCAA  493
            |||||||||..||||.||.|||||||||||||||||.||.|||||||||||..|||||||||||||||||||||
Sbjct  751  GGATGGCCCGCTGCCTACAGGAGCAGACAAGCCTCTCCGCATCACTGGAGACCCATTTAAAGTACAGCAAGCAA  824

Query  494  GAGAAATGGTACTAGAGATTATCCGAGAAAAAGACCAAGCTGACTTTCGGGGTGTACGCGGCGATTTCAACTCT  567
            ||||||||||.|||||||||||||||||.|||||.||.||||||||.||||||||.|||.|||||||||.|||.
Sbjct  825  GAGAAATGGTTCTAGAGATTATCCGAGAGAAAGATCAGGCTGACTTCCGGGGTGTGCGCAGCGATTTCACCTCC  898

Query  568  CGAATGGGAGGAGGCAGTATAGAGGTATCTGTGCCTAGGTTTGCTGTGGGGATTGTAATAGGAAGAAACGGGGA  641
            |||...||.|||||.|||||||||||.||||||||||||||||.|||.||||||||.||||||||.|||||.||
Sbjct  899  CGAGCAGGCGGAGGTAGTATAGAGGTGTCTGTGCCTAGGTTTGTTGTTGGGATTGTCATAGGAAGGAACGGAGA  972

Query  642  AATGATCAAAAAGATCCAGAATGATGCTGGTGTGAGGATTCAGTTTAAACCAGATGATGGGATTAGTCCAGAAT  715
            ||||||.||.|||||||||||.||.||||||||||||||.||.||.|||||||||||.||||||||||||||| 
Sbjct  973  AATGATTAAGAAGATCCAGAACGACGCTGGTGTGAGGATCCAATTCAAACCAGATGACGGGATTAGTCCAGAA-  1045

Query  716  ATTACAGA-CA--GCAGGTC----GCTTTCTACGGACAGA----CGTTAG--GGCAG----------------G  760
                 ||| ||  |||||||    ||..||      ||||    .||.||  .||||                |
Sbjct 1046  -----AGAGCAGCGCAGGTCATGGGCCCTC------CAGATCGGTGTCAGCATGCAGCTCGCATCATCAATGAG  1108

Query  761  CGCAGGCCCACAGC-CAGGAGCAG--------------------------------------------------  783
            |.||..|.|||.|| ||||| .||                                                  
Sbjct 1109  CTCATTCTCACGGCACAGGA-AAGAGAGATCCTTGGTGGCCTCACAGTAACAAGAGGAAGAGGCCGAGGCCGTA  1181

Query  784  --------------------------------------------------------------------------  783
                                                                                      
Sbjct 1182  GTGACTGGAGTGTGGGCACTCCTGGGGGCGTCCAGGAAATTACGTACACAGTGCCAGCTGATAAGTGCGGCCTT  1255

Query  784  --------------------------------------------------------------------------  783
                                                                                      
Sbjct 1256  GTGATAGGCAAAGGGGGCGAGAACATCAAAAGCATCAACCAGCAATCAGGTGCCCATGTGGAGCTTCAGCGGAA  1329

Query  784  --------------------------------------------------------------------------  783
                                                                                      
Sbjct 1330  CCCCCCTCCTAACACCGACCCTAACCTGCGGATATTTACCATCAGGGGTGCTCCTCAGCAGATGGAGGTGGCCA  1403

Query  784  --------------------------------------------------------------------------  783
                                                                                      
Sbjct 1404  GGCATCTCATAGATGAGAAAGTTGGCGTACGTACACGGGCCTCCCCCCACCTGGCTTATACTAGCTGGATTTGC  1477

Query  784  --------------------------------------------------------------------------  783
                                                                                      
Sbjct 1478  TTTTGGATGTCCAAGGTACCTGCTTTCCCCCAGAACCTTGTGCTTCCTGTGCCTCTCCATCCTTGCATCGTGTG  1551

Query  784  --------------------------------------------------------------------------  783
                                                                                      
Sbjct 1552  GGGGCAGCCTCTCCTCCTCTCCAAAGGAAAGTCCAAGGCTCAGGGAGTGCCAGGCCCCAGATGCAATGAGAGAA  1625

Query  784  --------------------------------------------------------------------------  783
                                                                                      
Sbjct 1626  GCCCCTGGCATGACTGCCAGGGCTTCAGCAGTCAGACCTCCGGCCATGTCCCTGCAGGCGTAAATGAGCTGCAG  1699

Query  784  --------------------------------------------------------------------------  783
                                                                                      
Sbjct 1700  GAAAGCAGCCTTCCCCCGGCACTGCCCCAGGTTCCCTCAGGCCTAACCCTGGCCACCAGCCCTACAGGCAGCTT  1773

Query  784  --------------------------------------------------------------------------  783
                                                                                      
Sbjct 1774  TCATTGACTCTGGCTTTAGTTTCAGGCACCTCAAAGCAGATAAAGAAAGGGAATGTTGATGGAGGACAGATGGG  1847

Query  784  --------------------------------------------------------------------------  783
                                                                                      
Sbjct 1848  CCACTGCTCACCTCAATGGGGACGTAGAATGGCAGAAAGAGCCCTGGGCCAGCCTAAATTGACGGGAGAGTCAA  1921

Query  784  --------------------------------------------------------------------------  783
                                                                                      
Sbjct 1922  GCAGGGTGCCAGCCTCGGAGCCCCTGCAGCCTTCGGACAGAGCCCCTTCAGCCAGCCACCAGCCGCACCACATC  1995

Query  784  --------------------------------------------------------------------------  783
                                                                                      
Sbjct 1996  AAAACACCTTTCCTCCCAGGGGCTTCCCCAACATCGCAGCTAAAGTTAATGGGAATCCCCACAGCACCCCTGTG  2069

Query  784  --------------------------------------------------------------------------  783
                                                                                      
Sbjct 2070  AGTGGCCCTCCAGCTTTTCTGACCCAAGGCTGGGGCAGCACTTACCAGGCTTGGCAGCAGCCTACACAACAAGT  2143

Query  784  --------------------------------------------------------------------------  783
                                                                                      
Sbjct 2144  CCCAAGCCAGCAGAGTCAGCCACAGAACAGCCAGCCCGACTACAGCAAGGCCTGGGAGGACTATTACAAAAAGC  2217

Query  784  --------------------------------------------------------------------------  783
                                                                                      
Sbjct 2218  AGAGTCATCCCACCAGTGCTGCCCCACAGGCCAGCTCCCCCCCAGACTACACGATGGCCTGGGCTGAGTACTAC  2291

Query  784  --------------------------------------------------------------------------  783
                                                                                      
Sbjct 2292  AGGCAGCAGGCCGCCTTCTATGGGCAGACTTTAGGGCAGGCTCAGGCCCACAGCCAGGAGCAGTAGATGGGCAT  2365

Query  784  --------------------------------------------------------------------------  783
                                                                                      
Sbjct 2366  CTGCCGCGGCTCTTCCCCGAAATCAGTGTGAGAGAAACCTGTTTGTTACAGAGATTTTTAGATTTGCAAACCTT  2439

Query  784  --------------------------------------------------------------------------  783
                                                                                      
Sbjct 2440  TTGATGAAGACCTTTGTTTTGTTCTGTGAAACACTATATTTAGATTAACAGAAATTTTCTAAAAATTGGGAAAA  2513

Query  784  --------------------------------------------------------------------------  783
                                                                                      
Sbjct 2514  TTAGTTACTAAACATTGCTGGTAATTTTTACGTCATGATTTCTTTGTAAATGTGTGAGCTCCGGGGCTCTTGGA  2587

Query  784  --------------------------------------------------------------------------  783
                                                                                      
Sbjct 2588  GCGAAACCTGCAAGCTCGGGTGCCCAAGCTCTCCTCGGAGCCTGGCATTTCATCACACGATGGCTTTGTCTTGT  2661

Query  784  --------------------------------------------------------------------------  783
                                                                                      
Sbjct 2662  GTCTTTTTAGTTACAGTTTGGGGTGGGTTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGGGTTTTTGGTTTTGGT  2735

Query  784  --------------------------------------------------------------------------  783
                                                                                      
Sbjct 2736  TTTTGTTTTCCCTTTTTTTTTTTTTTTTTTCTGTTACAACAGAAAAAATGGCTTGGAAGTCTTAGGTGGTAATG  2809

Query  784  --------------------------------------------------------------------------  783
                                                                                      
Sbjct 2810  TAACAAATTCTTTAAAAATTTTTGAAGCAGTATTTAAATATTCGTAAATGTAAATTCATTGTGTTTCACCTCTA  2883

Query  784  --------------------------------------------------------------------------  783
                                                                                      
Sbjct 2884  ATTTCTTGTATCTTGGCTGTCTGGTTTTATTGCATTTTTTAAAAAAAACTGAACTATTATGTATTGTAATTAAT  2957

Query  784  --------------------------------------------------------------------------  783
                                                                                      
Sbjct 2958  GATGTGAATTTTGAACTGAGACGGGTCCTTGTGTTGCGGGAGGGTCATTTGTGGGTTATGTCATTTCTAGCGTT  3031

Query  784  --------------------------------------------------------------------------  783
                                                                                      
Sbjct 3032  TTGATGGTGATGCAGAGACGCGGTCTGCCTTCGTGTAAGCTGCTCGTCTCCATTATCCAGGGCAGTTGTGTGTC  3105

Query  784  --------------------------------------------------------------------------  783
                                                                                      
Sbjct 3106  TAAGACCTCCAAGCTGGTTTTAAAAACAAAAAGCCTTTCTCTATTCTCAGAAATATAAATACTGTTATTTTTAA  3179

Query  784  --------------------------------------------------------------------------  783
                                                                                      
Sbjct 3180  TATTAAAAAGAAATTCAATATAACTTTTAACAAACACTGTGGACATTAAACCATATAAAAAAATGTAGTAACTA  3253

Query  784  --------------------------------------------------------------------------  783
                                                                                      
Sbjct 3254  TTTTTTAATTCCAGGGTGTTTTTGCTTTTTTTCCTTAAATATTTTCTTAATATTTGTCAAATTAACTAGATAAA  3327

Query  784  --------------------------------------------------------------------------  783
                                                                                      
Sbjct 3328  TAAATAAATCTAGTATTAACAACAGTATGAGTTAAATAATTTTGATTTAATAAAAGGGATACTATGATTTCCAA  3401

Query  784  --------------------------------------------------------------------------  783
                                                                                      
Sbjct 3402  TGTTTACTGTAGTGTATCTGTACAGATAACATGTATTTTTAAAGGAAACACGGAGTTGAAGCTATTTTTTCCTG  3475

Query  784  --------------------------------------------------------------------------  783
                                                                                      
Sbjct 3476  CATTTTGGATTGACCTGAGGAACATTCCGTTTGAAACGTGCTCGTTACGGTTTGCCGTTCTTGTTTTCCTTATG  3549

Query  784  --------------------------------------------------------------------------  783
                                                                                      
Sbjct 3550  ATGCTTGAAATGTCTAACTATTAAAAAGGCATTGGAAATGTTATGCATGTTGTTTTTTAAAGATGTTCTTTTTA  3623

Query  784  --------------------------------------------------------------------  783
                                                                                
Sbjct 3624  TTTGACTGACAATTCATTTTACACTCTATATAATAAAATTTCCACAAGATGTCTTGTGGGCAAAGTGT  3691