Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_11320
- Subject:
- XR_001783042.1
- Aligned Length:
- 3768
- Identities:
- 627
- Gaps:
- 3062
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ACCCCGCCTCACAGACGCTGCTTTCCCCCAACCTATCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTCTCCCTCT 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GAGCTAGCAGTGCCTTCCCTTCGCTTCCCTTCCGCCGGAAGTGGGGCGACTTTCCCTTTCCGGCTACGGGTCCC 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 GGAGCGGAGTGGGAGGCCGGACCGGGGGAGCCGAGCGACGGCGGTGGCGGTGGGCTTGGCTATGGCGGAGCTGG 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 TGCAGGGGCAGAGCGCTCCGGTGGGCATGAAGGCTGAGGGCTTTGTGGATGCCCTGCACCGGGTCCGGCAGATT 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 GCTGCTAAAATCGATTCAATTCCTCACTTGAATAATTCCACACCTCTGGTGGACCCCTCAGTGTACGGATACGG 370
Query 1 --------------------ATGCCTCCTA-----TAGGTAACCAGTTAGGGGCCTTGGTACATCAAAGGACGG 49
||| | |||||||||||||||||||||||||||||||||||.|.|
Sbjct 371 AGTACAGAAGCGGGCCCTGGATG------ATGGAGTAGGTAACCAGTTAGGGGCCTTGGTACATCAAAGGGCAG 438
Query 50 TAATAACGGAAGAATTCAAAGTGCCTGACAAAATGGTTGGATTTATTATCGGCAGGGGAGGTGAGCAGATTTCA 123
|||||||.||||||||||||||||||||.||||||||||||||||||||.||||||||||||||||||||||||
Sbjct 439 TAATAACAGAAGAATTCAAAGTGCCTGATAAAATGGTTGGATTTATTATTGGCAGGGGAGGTGAGCAGATTTCA 512
Query 124 CGGATTCAAGCAGAATCTGGTTGCAAAATTCAGATTGCTTCAGAGAGTTCTGGGATTCCAGAGAGGCCCTGTGT 197
||.|||||||||||||||||.|||||||||||||||||.||||
Sbjct 513 CGAATTCAAGCAGAATCTGGGTGCAAAATTCAGATTGCCTCAG------------------------------- 555
Query 198 ACTTACCGGAACCCCAGAAAGTATTGAACAAGCCAAACGGCTCCTGGGACAGATTGTGGACCGCTGTCGAAATG 271
|||||||||||||||||||||.|||||.|||||.||.|||||.||||
Sbjct 556 ---------------------------ACAAGCCAAACGGCTCCTGGGGCAGATCGTGGATCGATGTCGGAATG 602
Query 272 GACCTGGCTTTCATAATGACATAGACAGCAACAGCACAATCCAGGAGATTCTCATTCCCGCATCTAAAGTGGGT 345
|.|||||||||||.||.||.||.||..|||||||||||||||||||..||||.||.||.||||||||||||||.
Sbjct 603 GGCCTGGCTTTCACAACGATATGGATGGCAACAGCACAATCCAGGAACTTCTTATCCCTGCATCTAAAGTGGGG 676
Query 346 CTGGTCATCGGCAGAGGAGGGGAAACAATCAAGCAGTTGCAGGAGCGGACAGGGGTGAAGATGGTCATGATCCA 419
|||||||||||||.||||||||||||.||||||||||||||||||||.||.||.|||||.||||||||||||||
Sbjct 677 CTGGTCATCGGCAAAGGAGGGGAAACGATCAAGCAGTTGCAGGAGCGAACGGGTGTGAAAATGGTCATGATCCA 750
Query 420 GGATGGCCCATTGCCCACGGGAGCAGACAAGCCTCTTCGTATCACTGGAGATGCATTTAAAGTACAGCAAGCAA 493
|||||||||..||||.||.|||||||||||||||||.||.|||||||||||..|||||||||||||||||||||
Sbjct 751 GGATGGCCCGCTGCCTACAGGAGCAGACAAGCCTCTCCGCATCACTGGAGACCCATTTAAAGTACAGCAAGCAA 824
Query 494 GAGAAATGGTACTAGAGATTATCCGAGAAAAAGACCAAGCTGACTTTCGGGGTGTACGCGGCGATTTCAACTCT 567
||||||||||.|||||||||||||||||.|||||.||.||||||||.||||||||.|||.|||||||||.|||.
Sbjct 825 GAGAAATGGTTCTAGAGATTATCCGAGAGAAAGATCAGGCTGACTTCCGGGGTGTGCGCAGCGATTTCACCTCC 898
Query 568 CGAATGGGAGGAGGCAGTATAGAGGTATCTGTGCCTAGGTTTGCTGTGGGGATTGTAATAGGAAGAAACGGGGA 641
|||...||.|||||.|||||||||||.||||||||||||||||.|||.||||||||.||||||||.|||||.||
Sbjct 899 CGAGCAGGCGGAGGTAGTATAGAGGTGTCTGTGCCTAGGTTTGTTGTTGGGATTGTCATAGGAAGGAACGGAGA 972
Query 642 AATGATCAAAAAGATCCAGAATGATGCTGGTGTGAGGATTCAGTTTAAACCAGATGATGGGATTAGTCCAGAAT 715
||||||.||.|||||||||||.||.||||||||||||||.||.||.|||||||||||.|||||||||||||||
Sbjct 973 AATGATTAAGAAGATCCAGAACGACGCTGGTGTGAGGATCCAATTCAAACCAGATGACGGGATTAGTCCAGAA- 1045
Query 716 ATTACAGA-CA--GCAGGTC----GCTTTCTACGGACAGA----CGTTAG--GGCAG----------------G 760
||| || ||||||| ||..|| |||| .||.|| .|||| |
Sbjct 1046 -----AGAGCAGCGCAGGTCATGGGCCCTC------CAGATCGGTGTCAGCATGCAGCTCGCATCATCAATGAG 1108
Query 761 CGCAGGCCCACAGC-CAGGAGCAG-------------------------------------------------- 783
|.||..|.|||.|| ||||| .||
Sbjct 1109 CTCATTCTCACGGCACAGGA-AAGAGAGATCCTTGGTGGCCTCACAGTAACAAGAGGAAGAGGCCGAGGCCGTA 1181
Query 784 -------------------------------------------------------------------------- 783
Sbjct 1182 GTGACTGGAGTGTGGGCACTCCTGGGGGCGTCCAGGAAATTACGTACACAGTGCCAGCTGATAAGTGCGGCCTT 1255
Query 784 -------------------------------------------------------------------------- 783
Sbjct 1256 GTGATAGGCAAAGGGGGCGAGAACATCAAAAGCATCAACCAGCAATCAGGTGCCCATGTGGAGCTTCAGCGGAA 1329
Query 784 -------------------------------------------------------------------------- 783
Sbjct 1330 CCCCCCTCCTAACACCGACCCTAACCTGCGGATATTTACCATCAGGGGTGCTCCTCAGCAGATGGAGGTGGCCA 1403
Query 784 -------------------------------------------------------------------------- 783
Sbjct 1404 GGCATCTCATAGATGAGAAAGTTGGCGTACGTACACGGGCCTCCCCCCACCTGGCTTATACTAGCTGGATTTGC 1477
Query 784 -------------------------------------------------------------------------- 783
Sbjct 1478 TTTTGGATGTCCAAGGTACCTGCTTTCCCCCAGAACCTTGTGCTTCCTGTGCCTCTCCATCCTTGCATCGTGTG 1551
Query 784 -------------------------------------------------------------------------- 783
Sbjct 1552 GGGGCAGCCTCTCCTCCTCTCCAAAGGAAAGTCCAAGGCTCAGGGAGTGCCAGGCCCCAGATGCAATGAGAGAA 1625
Query 784 -------------------------------------------------------------------------- 783
Sbjct 1626 GCCCCTGGCATGACTGCCAGGGCTTCAGCAGTCAGACCTCCGGCCATGTCCCTGCAGGCGTAAATGAGCTGCAG 1699
Query 784 -------------------------------------------------------------------------- 783
Sbjct 1700 GAAAGCAGCCTTCCCCCGGCACTGCCCCAGGTTCCCTCAGGCCTAACCCTGGCCACCAGCCCTACAGGCAGCTT 1773
Query 784 -------------------------------------------------------------------------- 783
Sbjct 1774 TCATTGACTCTGGCTTTAGTTTCAGGCACCTCAAAGCAGATAAAGAAAGGGAATGTTGATGGAGGACAGATGGG 1847
Query 784 -------------------------------------------------------------------------- 783
Sbjct 1848 CCACTGCTCACCTCAATGGGGACGTAGAATGGCAGAAAGAGCCCTGGGCCAGCCTAAATTGACGGGAGAGTCAA 1921
Query 784 -------------------------------------------------------------------------- 783
Sbjct 1922 GCAGGGTGCCAGCCTCGGAGCCCCTGCAGCCTTCGGACAGAGCCCCTTCAGCCAGCCACCAGCCGCACCACATC 1995
Query 784 -------------------------------------------------------------------------- 783
Sbjct 1996 AAAACACCTTTCCTCCCAGGGGCTTCCCCAACATCGCAGCTAAAGTTAATGGGAATCCCCACAGCACCCCTGTG 2069
Query 784 -------------------------------------------------------------------------- 783
Sbjct 2070 AGTGGCCCTCCAGCTTTTCTGACCCAAGGCTGGGGCAGCACTTACCAGGCTTGGCAGCAGCCTACACAACAAGT 2143
Query 784 -------------------------------------------------------------------------- 783
Sbjct 2144 CCCAAGCCAGCAGAGTCAGCCACAGAACAGCCAGCCCGACTACAGCAAGGCCTGGGAGGACTATTACAAAAAGC 2217
Query 784 -------------------------------------------------------------------------- 783
Sbjct 2218 AGAGTCATCCCACCAGTGCTGCCCCACAGGCCAGCTCCCCCCCAGACTACACGATGGCCTGGGCTGAGTACTAC 2291
Query 784 -------------------------------------------------------------------------- 783
Sbjct 2292 AGGCAGCAGGCCGCCTTCTATGGGCAGACTTTAGGGCAGGCTCAGGCCCACAGCCAGGAGCAGTAGATGGGCAT 2365
Query 784 -------------------------------------------------------------------------- 783
Sbjct 2366 CTGCCGCGGCTCTTCCCCGAAATCAGTGTGAGAGAAACCTGTTTGTTACAGAGATTTTTAGATTTGCAAACCTT 2439
Query 784 -------------------------------------------------------------------------- 783
Sbjct 2440 TTGATGAAGACCTTTGTTTTGTTCTGTGAAACACTATATTTAGATTAACAGAAATTTTCTAAAAATTGGGAAAA 2513
Query 784 -------------------------------------------------------------------------- 783
Sbjct 2514 TTAGTTACTAAACATTGCTGGTAATTTTTACGTCATGATTTCTTTGTAAATGTGTGAGCTCCGGGGCTCTTGGA 2587
Query 784 -------------------------------------------------------------------------- 783
Sbjct 2588 GCGAAACCTGCAAGCTCGGGTGCCCAAGCTCTCCTCGGAGCCTGGCATTTCATCACACGATGGCTTTGTCTTGT 2661
Query 784 -------------------------------------------------------------------------- 783
Sbjct 2662 GTCTTTTTAGTTACAGTTTGGGGTGGGTTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGGGTTTTTGGTTTTGGT 2735
Query 784 -------------------------------------------------------------------------- 783
Sbjct 2736 TTTTGTTTTCCCTTTTTTTTTTTTTTTTTTCTGTTACAACAGAAAAAATGGCTTGGAAGTCTTAGGTGGTAATG 2809
Query 784 -------------------------------------------------------------------------- 783
Sbjct 2810 TAACAAATTCTTTAAAAATTTTTGAAGCAGTATTTAAATATTCGTAAATGTAAATTCATTGTGTTTCACCTCTA 2883
Query 784 -------------------------------------------------------------------------- 783
Sbjct 2884 ATTTCTTGTATCTTGGCTGTCTGGTTTTATTGCATTTTTTAAAAAAAACTGAACTATTATGTATTGTAATTAAT 2957
Query 784 -------------------------------------------------------------------------- 783
Sbjct 2958 GATGTGAATTTTGAACTGAGACGGGTCCTTGTGTTGCGGGAGGGTCATTTGTGGGTTATGTCATTTCTAGCGTT 3031
Query 784 -------------------------------------------------------------------------- 783
Sbjct 3032 TTGATGGTGATGCAGAGACGCGGTCTGCCTTCGTGTAAGCTGCTCGTCTCCATTATCCAGGGCAGTTGTGTGTC 3105
Query 784 -------------------------------------------------------------------------- 783
Sbjct 3106 TAAGACCTCCAAGCTGGTTTTAAAAACAAAAAGCCTTTCTCTATTCTCAGAAATATAAATACTGTTATTTTTAA 3179
Query 784 -------------------------------------------------------------------------- 783
Sbjct 3180 TATTAAAAAGAAATTCAATATAACTTTTAACAAACACTGTGGACATTAAACCATATAAAAAAATGTAGTAACTA 3253
Query 784 -------------------------------------------------------------------------- 783
Sbjct 3254 TTTTTTAATTCCAGGGTGTTTTTGCTTTTTTTCCTTAAATATTTTCTTAATATTTGTCAAATTAACTAGATAAA 3327
Query 784 -------------------------------------------------------------------------- 783
Sbjct 3328 TAAATAAATCTAGTATTAACAACAGTATGAGTTAAATAATTTTGATTTAATAAAAGGGATACTATGATTTCCAA 3401
Query 784 -------------------------------------------------------------------------- 783
Sbjct 3402 TGTTTACTGTAGTGTATCTGTACAGATAACATGTATTTTTAAAGGAAACACGGAGTTGAAGCTATTTTTTCCTG 3475
Query 784 -------------------------------------------------------------------------- 783
Sbjct 3476 CATTTTGGATTGACCTGAGGAACATTCCGTTTGAAACGTGCTCGTTACGGTTTGCCGTTCTTGTTTTCCTTATG 3549
Query 784 -------------------------------------------------------------------------- 783
Sbjct 3550 ATGCTTGAAATGTCTAACTATTAAAAAGGCATTGGAAATGTTATGCATGTTGTTTTTTAAAGATGTTCTTTTTA 3623
Query 784 -------------------------------------------------------------------- 783
Sbjct 3624 TTTGACTGACAATTCATTTTACACTCTATATAATAAAATTTCCACAAGATGTCTTGTGGGCAAAGTGT 3691
