Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_11327
- Subject:
- NM_001130528.3
- Aligned Length:
- 3976
- Identities:
- 346
- Gaps:
- 3596
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ATGGAGCTGGAGGACGGTGTGGTGTATCAGGAGGAGCCCGGCGGCTCCGGGGCCGTGATGTCGGAGCGGGTGTC 74
Query 1 --------------------------------------------------ATGA----------GTC------C 8
|||| ||| |
Sbjct 75 CGGCCTGGCCGGCTCCATCTACCGCGAGTTCGAGCGGCTTATCGGGCGCTATGACGAGGAGGTGGTCAAAGAGC 148
Query 9 TGGATGCATGCTGCTGTTTGTGTTTG-GCT----------------TTGTTGGCG--GGGC-----------GG 52
|| ||||.||||.|.|||..|| ||| .||||.||| ||.| ||
Sbjct 149 TG-----ATGCCGCTGGTGGTGGCTGTGCTGGAGAACCTGGACTCGGTGTTCGCGCAGGACCAGGAGCACCAGG 217
Query 53 TGG----------------------------------------------------------------------- 55
|||
Sbjct 218 TGGAGCTGGAGCTGCTGCGGGACGACAACGAGCAGCTCATCACCCAGTACGAGCGGGAGAAGGCGCTGCGCAAG 291
Query 56 ----------------TCATT-AATTCTG----CTATC------------------------------------ 72
||||| |||| || ||.||
Sbjct 292 CACGCTGAGGAGAAATTCATTGAATT-TGAAGACTCTCAAGAACAGGAAAAAAAGGACTTACAGACCCGAGTGG 364
Query 73 -----TTAGTATCTC----------TCT----CTG-----------TTTTGCTG--------------CTTG-- 100
||||.||||| .|| ||| .|.||||| ||||
Sbjct 365 AATCTTTAGAATCTCAAACAAGACAACTTGAGCTGAAAGCGAAAAACTATGCTGACCAGATTAGCAGACTTGAA 438
Query 101 --------------------------------TGCACTTTTC-------------------------TATTTCT 117
|||| ||.| ||.||.|
Sbjct 439 GAAAGAGAAGCAGAACTGAAGAAGGAATATAATGCA--TTACATCAAAGACACACTGAGATGATCCATAATTAT 510
Query 118 ACCGGTG----------------------TGC--CAGCTCTGACGCAG-----AACCTA----CCA-------- 150
| || |.| |||||||.|.|.|| || ||| |||
Sbjct 511 A----TGGAACATTTAGAAAGAACAAAACTTCATCAGCTCTCAGGGAGTGATCAA-CTAGAATCCACAGCTCAT 579
Query 151 AGGATACTCAGAAAAGAACGCCCTATATCATTAGGAATTTTCCCATTACCTGCTGGAGATGGATTGCTTACACC 224
||.|.|.|.|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 580 AGTAGAATTAGAAAAGAACGCCCTATATCATTAGGAATTTTCCCATTACCTGCTGGAGATGGATTGCTTACACC 653
Query 225 TGATGCTCAGAAAGGAGGAGAGACCCCTGGATCTGAGCAATGGAAATTTCAGGAATTAAGTCAACCACGTTCTC 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 654 TGATGCTCAGAAAGGAGGAGAGACCCCTGGATCTGAGCAATGGAAATTTCAGGAATTAAGTCAACCACGTTCTC 727
Query 299 ATACCAGCCTGAAGGTCAGCAATAGTCCTGAACCTCAGAAGGCTGTAGAACAGGAGG-TGAG------AATGGT 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| .|||.|
Sbjct 728 ATACCAGCCTGAAGGTCAGCAATAGTCCTGAACCTCAGAAGGCTGTAGAACAGGAGGATGAGCTTTCTGATGTT 801
Query 366 ---------------------------------------GCTTCTTAACATTTTGCAAAAAGT-------ATAC 393
|||..||.|.||.|.||||.||.| ||||
Sbjct 802 AGCCAAGGCGGATCTAAAGCTACCACTCCAGCATCAACAGCTAATTCAGATGTGGCAACAATTCCTACTGATAC 875
Query 394 -------------------------------------------------------------------------- 393
Sbjct 876 TCCCTTAAAGGAAGAAAACGAAGGATTTGTGAAGGTTACAGATGCGCCAAATAAATCAGAGATAAGCAAACACA 949
Query 394 -------------------------------------------------------------------------- 393
Sbjct 950 TTGAAGTACAGGTAGCCCAGGAAACTAGAAATGTATCTACTGGCTCTGCTGAAAATGAAGAAAAGTCAGAAGTT 1023
Query 394 -------------------------------------------------------------------------- 393
Sbjct 1024 CAAGCAATCATCGAATCTACTCCTGAGCTGGATATGGACAAAGATCTCAGTGGATATAAAGGTTCAAGCACTCC 1097
Query 394 -------------------------------------------------------------------------- 393
Sbjct 1098 CACCAAAGGCATAGAGAACAAAGCTTTTGATCGCAATACAGAATCTCTCTTTGAAGAACTGTCTTCAGCTGGCT 1171
Query 394 -------------------------------------------------------------------------- 393
Sbjct 1172 CAGGCCTAATAGGAGATGTGGATGAAGGAGCAGATTTACTAGGAATGGGTCGGGAAGTTGAGAATCTTATATTA 1245
Query 394 -------------------------------------------------------------------------- 393
Sbjct 1246 GAAAATACACAACTGTTGGAAACCAAAAATGCTTTGAACATAGTGAAGAATGATTTGATAGCAAAAGTGGATGA 1319
Query 394 -------------------------------------------------------------------------- 393
Sbjct 1320 ACTGACCTGTGAGAAAGATGTGCTGCAAGGGGAATTGGAGGCTGTGAAGCAAGCCAAACTGAAACTAGAGGAAA 1393
Query 394 -------------------------------------------------------------------------- 393
Sbjct 1394 AGAACAGAGAATTGGAGGAAGAGCTTAGGAAAGCTCGGGCAGAAGCTGAAGATGCAAGGCAAAAAGCAAAAGAT 1467
Query 394 -------------------------------------------------------------------------- 393
Sbjct 1468 GACGATGATAGTGATATTCCCACAGCCCAGAGGAAACGGTTTACTAGAGTAGAAATGGCCCGTGTTCTCATGGA 1541
Query 394 -------------------------------------------------------------------------- 393
Sbjct 1542 GCGAAACCAGTATAAAGAGAGATTGATGGAGCTTCAGGAAGCTGTTCGATGGACAGAGATGATTCGGGCATCAC 1615
Query 394 -------------------------------------------------------------------------- 393
Sbjct 1616 GAGAAAATCCAGCCATGCAGGAAAAAAAAAGGTCAAGCATTTGGCAGTTTTTCAGCCGACTTTTCAGCTCCTCA 1689
Query 394 -------------------------------------------------------------------------- 393
Sbjct 1690 AGTAACACGACTAAGAAGCCTGAACCACCTGTTAATCTGAAGTACAATGCACCCACGTCTCATGTTACTCCGTC 1763
Query 394 -------------------------------------------------------------------------- 393
Sbjct 1764 CGTCAAGAAAAGAAGCAGCACCTTATCTCAGCTCCCTGGGGATAAGTCCAAAGCCTTTGATTTCCTTAGTGAAG 1837
Query 394 -------------------------------------------------------------------------- 393
Sbjct 1838 AAACTGAAGCTAGTTTAGCCTCACGCAGAGAACAAAAGAGAGAGCAGTATCGTCAGGTAAAAGCACATGTTCAG 1911
Query 394 -------------------------------------------------------------------------- 393
Sbjct 1912 AAGGAAGACGGTAGAGTGCAGGCTTTTGGCTGGAGTCTGCCTCAGAAGTACAAACAGGTAACCAATGGTCAAGG 1985
Query 394 -------------------------------------------------------------------------- 393
Sbjct 1986 TGAAAATAAGATGAAAAATTTACCTGTGCCTGTCTATCTCAGACCTCTGGATGAAAAAGATACATCAATGAAGC 2059
Query 394 -------------------------------------------------------------------------- 393
Sbjct 2060 TGTGGTGTGCTGTTGGAGTCAATTTATCTGGTGGGAAGACCAGAGATGGTGGTTCTGTTGTTGGAGCAAGTGTA 2133
Query 394 -------------------------------------------------------------------------- 393
Sbjct 2134 TTTTACAAGGATGTTGCTGGTTTGGATACAGAAGGCAGTAAACAGCGAAGTGCCTCTCAGAGTAGTTTAGATAA 2207
Query 394 -------------------------------------------------------------------------- 393
Sbjct 2208 GTTAGATCAGGAACTTAAGGAACAGCAGAAGGAGTTAAAAAATCAAGAAGAATTATCCAGTCTAGTTTGGATCT 2281
Query 394 -------------------------------------------------------------------------- 393
Sbjct 2282 GTACCAGCACTCATTCGGCTACAAAAGTTCTTATTATTGATGCTGTTCAACCTGGCAACATCCTAGACAGTTTC 2355
Query 394 -------------------------------------------------------------------------- 393
Sbjct 2356 ACTGTTTGCAACTCTCATGTTCTGTGCATTGCAAGTGTGCCAGGTGCACGAGAAACAGACTACCCTGCAGGAGA 2429
Query 394 -------------------------------------------------------------------------- 393
Sbjct 2430 AGATCTTTCAGAATCTGGTCAGGTAGACAAAGCATCTTTATGTGGAAGTATGACAAGCAACAGCTCAGCAGAGA 2503
Query 394 -------------------------------------------------------------------------- 393
Sbjct 2504 CAGACAGCCTGTTAGGAGGCATCACAGTGGTTGGTTGTTCTGCAGAAGGTGTGACGGGAGCTGCCACTTCCCCT 2577
Query 394 -------------------------------------------------------------------------- 393
Sbjct 2578 AGTACAAATGGTGCTTCTCCAGTGATGGATAAACCACCAGAAATGGAAGCAGAAAATAGTGAGGTTGATGAAAA 2651
Query 394 -------------------------------------------------------------------------- 393
Sbjct 2652 TGTTCCAACAGCAGAAGAAGCAACTGAAGCTACAGAAGGGAATGCGGGGTCAGCTGAAGACACAGTGGACATCT 2725
Query 394 -------------------------------------------------------------------------- 393
Sbjct 2726 CCCAAACTGGCGTCTACACAGAGCATGTCTTTACAGATCCTTTGGGAGTTCAGATCCCAGAAGACCTCTCCCCA 2799
Query 394 -------------------------------------------------------------------------- 393
Sbjct 2800 GTGTATCAGTCGAGCAATGACTCAGATGCATATAAAGATCAAATATCAGTACTGCCAAATGAACAAGACTTGGT 2873
Query 394 -------------------------------------------------------------------------- 393
Sbjct 2874 GAGAGAAGAAGCCCAGAAAATGAGTAGTCTTTTACCAACTATGTGGCTTGGAGCTCAAAATGGCTGTTTGTATG 2947
Query 394 -------------------------------------------------------------------------- 393
Sbjct 2948 TCCATTCATCTGTAGCCCAGTGGAGGAAATGTCTCCATTCCATTAAACTTAAAGATTCGATTCTCAGTATTGTA 3021
Query 394 -------------------------------------------------------------------------- 393
Sbjct 3022 CACGTGAAGGGAATCGTGTTAGTAGCCCTGGCTGACGGCACCCTTGCAATCTTTCACAGAGGAGTGGATGGGCA 3095
Query 394 -------------------------------------------------------------------------- 393
Sbjct 3096 GTGGGATTTGTCAAACTATCACCTCTTAGACCTTGGACGGCCTCATCATTCCATCCGTTGCATGACTGTGGTAC 3169
Query 394 -------------------------------------------------------------------------- 393
Sbjct 3170 ATGACAAAGTCTGGTGTGGCTATAGGAACAAAATCTATGTGGTGCAGCCAAAGGCCATGAAAATAGAGAAATCT 3243
Query 394 -------------------------------------------------------------------------- 393
Sbjct 3244 TTTGATGCACATCCCAGGAAGGAGAGCCAAGTGCGACAGCTTGCGTGGGTGGGGGATGGCGTGTGGGTCTCCAT 3317
Query 394 -------------------------------------------------------------------------- 393
Sbjct 3318 TCGCTTGGATTCTACGCTCCGTCTCTATCATGCACACACTTATCAACATCTACAGGATGTGGACATTGAGCCTT 3391
Query 394 -------------------------------------------------------------------------- 393
Sbjct 3392 ATGTAAGCAAAATGTTAGGTACTGGAAAACTGGGCTTCTCTTTTGTGAGAATTACAGCTCTTATGGTGTCTTGT 3465
Query 394 -------------------------------------------------------------------------- 393
Sbjct 3466 AATCGTTTGTGGGTGGGGACAGGAAATGGTGTCATTATCTCCATCCCATTGACAGAAACAAATAAAACCTCAGG 3539
Query 394 -------------------------------------------------------------------------- 393
Sbjct 3540 TGTACCAGGAAATCGTCCTGGAAGTGTAATCCGTGTATATGGTGATGAAAACAGTGATAAAGTGACTCCAGGGA 3613
Query 394 -------------------------------------------------------------------------- 393
Sbjct 3614 CATTTATACCCTATTGTTCAATGGCACATGCACAGCTTTGCTTCCATGGGCACCGGGATGCTGTGAAATTCTTT 3687
Query 394 -------------------------------------------------------------------------- 393
Sbjct 3688 GTGGCAGTCCCAGGTCAAGTCATCAGCCCACAAAGTAGCAGTAGTGGCACGGATCTGACGGGTGACAAAGCAGG 3761
Query 394 -------------------------------------------------------------------------- 393
Sbjct 3762 GCCATCTGCACAGGAGCCTGGTAGTCAGACGCCCTTGAAGTCTATGCTTGTCATCAGTGGAGGAGAGGGCTACA 3835
Query 394 -------------------------------------------------------------------------- 393
Sbjct 3836 TCGACTTCCGAATGGGTGATGAAGGTGGAGAATCAGAACTTCTTGGAGAGGATCTTCCACTTGAACCTTCTGTC 3909
Query 394 ------------------------------------------------------ 393
Sbjct 3910 ACCAAAGCAGAAAGGAGTCACTTGATAGTGTGGCAAGTGATGTATGGCAATGAG 3963
