Nucleotide Global Alignment

Description

Query:
ccsbBroad304_11339
Subject:
NR_136266.1
Aligned Length:
2921
Identities:
1514
Gaps:
1407

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  AGTGACGCACTTCCTGTCAGTGACGCACTTCCCCTCTGCTGGGCGCGCGGTGGACGGTCTGAAAGGGAGTGTTC  74

Query    1  ------------------------------------ATGGCTTCCTCGCGAGCCTCTTCCACGGCAACCAAAAC  38
                                                ||||||||||||||||||||||||||||||||||||||
Sbjct   75  GGGTTTCGCTGGGGCCTCGCGGCTCCAGAGCCCAGCATGGCTTCCTCGCGAGCCTCTTCCACGGCAACCAAAAC  148

Query   39  TAAAGCACCCGACGACTTAGTTGCTCCGGTCGTGAAGAAACCACACATCTATTATGGAAGTTTGGAAGAGAAGG  112
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  149  TAAAGCACCCGACGACTTAGTTGCTCCGGTCGTGAAGAAACCACACATCTATTATGGAAGTTTGGAAGAGAAGG  222

Query  113  AGAGGGAGCGTCTGGCCAAAGGAGAGTCTGGGATTTTGGGGAAAGACGGACTTAAAGCAGGGATCGAAGCTGGA  186
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  223  AGAGGGAGCGTCTGGCCAAAGGAGAGTCTGGGATTTTGGGGAAAGACGGACTTAAAGCAGGGATCGAAGCTGGA  296

Query  187  AATATTAATATAACCTCTGGAGAAGTGTTTGAAATTGAAGAGCATATCAGCGAGCGACAGGCAGAAGTATTGGC  260
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  297  AATATTAATATAACCTCTGGAGAAGTGTTTGAAATTGAAGAGCATATCAGCGAGCGACAGGCAGAAGTATTGGC  370

Query  261  TGAGTTTGAGAGAAGGAAGCGAGCCCGGCAGATCAATGTTTCCACAGATGACTCAGAGGTCAAAGCTTGCCTTA  334
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  371  TGAGTTTGAGAGAAGGAAGCGAGCCCGGCAGATCAATGTTTCCACAGATGACTCAGAGGTCAAAGCTTGCCTTA  444

Query  335  GAGCCTTGGGGGAACCCATCACACTTTTTGGAGAGGGTCCTGCTGAAAGAAGAGAAAGGTTAAGAAATATCCTC  408
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  445  GAGCCTTGGGGGAACCCATCACACTTTTTGGAGAGGGTCCTGCTGAAAGAAGAGAAAGGTTAAGAAATATCCTC  518

Query  409  TCAGTTGTCGGTACTGATGCCTTGAAAAAGACCAAAAAGGATGATGAGAAGTCTAAAAAGTCCAAAGAAGAGTA  482
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  519  TCAGTTGTCGGTACTGATGCCTTGAAAAAGACCAAAAAGGATGATGAGAAGTCTAAAAAGTCCAAAGAAGAGTA  592

Query  483  TCAGCAAACCTGGTATCATGAAGGACCAAATAGCTTGAAGGTGGCAAGACTATGGATTGCTAATTATTCGTTGC  556
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  593  TCAGCAAACCTGGTATCATGAAGGACCAAATAGCTTGAAGGTGGCAAGACTATGGATTGCTAATTATTCGTTGC  666

Query  557  CCAGGGCAATGAAACGCTTGGAAGAGGCCCGACTCCATAAGGAGATTCCTGAGACAACAAGGACCTCCCAGATG  630
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  667  CCAGGGCAATGAAACGCTTGGAAGAGGCCCGACTCCATAAGGAGATTCCTGAGACAACAAGGACCTCCCAGATG  740

Query  631  CAAGAGCTGCACAAGTCTCTCCGGTCTTTGAATAATTTTTGCAGTCAGATTGGGGATGATCGGCCTATCTCCTA  704
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  741  CAAGAGCTGCACAAGTCTCTCCGGTCTTTGAATAATTTTTGCAGTCAGATTGGGGATGATCGGCCTATCTCCTA  814

Query  705  CTGTCACTTTAGTCCCAATTCCAAGATGCTGGCCACAGCTTGTTGGAGTGGGCTTTGCAAGCTCTGGTCTGTTC  778
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  815  CTGTCACTTTAGTCCCAATTCCAAGATGCTGGCCACAGCTTGTTGGAGTGGGCTTTGCAAGCTCTGGTCTGTTC  888

Query  779  CTGATTGCAACCTCCTTCACACTCTTCGAGGGCATAACACAAATGTAGGAGCAATTGTATTCCATCCCAAATCC  852
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  889  CTGATTGCAACCTCCTTCACACTCTTCGAGGGCATAACACAAATGTAGGAGCAATTGTATTCCATCCCAAATCC  962

Query  853  ACTGTCTCCTTGGACCCAAAAGATGTCAACCTGGCCTCTTGTGCGGCTGATGGCTCTGTGAAGCTTTGGAGTCT  926
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  963  ACTGTCTCCTTGGACCCAAAAGATGTCAACCTGGCCTCTTGTGCGGCTGATGGCTCTGTGAAGCTTTGGAGTCT  1036

Query  927  CGACAGTGATGAACCAGTGGCAGATATTGAAGGCCATACAGTGCGTGTGGCGCGGGTAATGTGGCATCCTTCAG  1000
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037  CGACAGTGATGAACCAGTGGCAGATATTGAAGGCCATACAGTGCGTGTGGCGCGGGTAATGTGGCATCCTTCAG  1110

Query 1001  GACGTTTCCTGGGCACCACCTGCTATGACCGTTCATGGCGCTTATGGGATTTGGAGGCTCAAGAGGAGATCCTG  1074
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111  GACGTTTCCTGGGCACCACCTGCTATGACCGTTCATGGCGCTTATGGGATTTGGAGGCTCAAGAGGAGATCCTG  1184

Query 1075  CATCAGGAAGGCCATAGCATGGGTGTGTATGACATTGCCTTCCATCAAGATGGCTCTTTGGCTGGCACTGGGGG  1148
            |||||||||||||||||||                                                 ||||||
Sbjct 1185  CATCAGGAAGGCCATAGCA-------------------------------------------------TGGGGG  1209

Query 1149  ACTGGATGCATTTGGTCGAGTTTGGGACCTACGCACAGGACGTTGTATCATGTTCTTAGAAGGCCACCTGAAAG  1222
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1210  ACTGGATGCATTTGGTCGAGTTTGGGACCTACGCACAGGACGTTGTATCATGTTCTTAGAAGGCCACCTGAAAG  1283

Query 1223  AAATCTATGGAATAAATTTCTCCCCCAATGGCTATCACATTGCAACCGGCAGTGGTGACAACACCTGCAAAGTG  1296
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1284  AAATCTATGGAATAAATTTCTCCCCCAATGGCTATCACATTGCAACCGGCAGTGGTGACAACACCTGCAAAGTG  1357

Query 1297  TGGGACCTCCGACAGCGGCGTTGCGTCTACACCATCCCTGCTCATCAGAACTTAGTGACTGGTGTCAAGTTTGA  1370
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1358  TGGGACCTCCGACAGCGGCGTTGCGTCTACACCATCCCTGCTCATCAGAACTTAGTGACTGGTGTCAAGTTTGA  1431

Query 1371  GCCTATCCATGGGAACTTCTTGCTTACTGGTGCCTATGATAACACAGCCAAGATCTGGACGCACCCAGGCTGGT  1444
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1432  GCCTATCCATGGGAACTTCTTGCTTACTGGTGCCTATGATAACACAGCCAAGATCTGGACGCACCCAGGCTGGT  1505

Query 1445  CCCCGCTGAAGACTCTGGCTGGCCACGAAGGCAAAGTGATGGGCCTAGATATTTCTTCCGATGGGCAGCTCATA  1518
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1506  CCCCGCTGAAGACTCTGGCTGGCCACGAAGGCAAAGTGATGGGCCTAGATATTTCTTCCGATGGGCAGCTCATA  1579

Query 1519  GCCACTTGCTCATATGACAGGACCTTCAAGCTGTGGATGGCTGAA-----------------------------  1563
            |||||||||||||||||||||||||||||||||||||||||||||                             
Sbjct 1580  GCCACTTGCTCATATGACAGGACCTTCAAGCTGTGGATGGCTGAATAGATGACAATGGGAAAAGGACTTGAACC  1653

Query 1564  --------------------------------------------------------------------------  1563
                                                                                      
Sbjct 1654  TCAAGCTCTCTCTAAGGAGCTGTTTTCCTCAAACGAGAAGAATTGAAGTGTTTAGTTCTATCATGTTTTCTGCC  1727

Query 1564  --------------------------------------------------------------------------  1563
                                                                                      
Sbjct 1728  AATTACCATGCATAGACCCTCAGTAGAATTGGATTTCCATGTCAGCCCCCACTCCAGGAAGGCAGCCCAATCCC  1801

Query 1564  --------------------------------------------------------------------------  1563
                                                                                      
Sbjct 1802  TAGGTGATGGGGAACCCCTCTCACGGTTGAAAATTTATTACCTTTTTACGCCCTGCCACGAACTGTGTAGACAT  1875

Query 1564  --------------------------------------------------------------------------  1563
                                                                                      
Sbjct 1876  TGTTTTTATTAATCTTTTGTTTGGCCGGGCGTGGTGGCTCACGCCTGTAATCCTAGCACTTTGGGAGGCCGAGG  1949

Query 1564  --------------------------------------------------------------------------  1563
                                                                                      
Sbjct 1950  TGGGTAGATCGCTTGAGCTCAGGAGTTCAAGACGAGCCTGGGCAACATGGCAAATGCCGTCTCTGCAAAAAAAT  2023

Query 1564  --------------------------------------------------------------------------  1563
                                                                                      
Sbjct 2024  ACTAAAATTAGCTGGTCGCGGTGGCTTCTGCCTGTGATTCCGGCTACTTGGGAGGCTGAGGTGGGAGGGATTGC  2097

Query 1564  --------------------------------------------------------------------------  1563
                                                                                      
Sbjct 2098  TTAAGCCTGGGAGGCAGAGGTTGCAGTGAGCCGAGATTGCGCCATTGCACTCTAGCCTGTGTGACAGAGCAAGA  2171

Query 1564  --------------------------------------------------------------------------  1563
                                                                                      
Sbjct 2172  CCCTGTCTCAAAAAAAAAAAAAATTTGTTCGAATGCCTTATAGCCTTCCTCACAGCACCCAGGATTGTGACTGA  2245

Query 1564  --------------------------------------------------------------------------  1563
                                                                                      
Sbjct 2246  CTCTGCATTTTTAATTCTTGAAACTTGGCTTTCCATAACATGGTACATGCTTCAGGACTACATATGACCCAGAG  2319

Query 1564  --------------------------------------------------------------------------  1563
                                                                                      
Sbjct 2320  AGCAAGGTGGCTGAACTATAGTCTGGAAGCCCTCAGGTAAAGAGGCACATCTCACCACTCATTGGTTAAACAAT  2393

Query 1564  --------------------------------------------------------------------------  1563
                                                                                      
Sbjct 2394  GCATCATAGCGAGCACTTTTCCTTTCCCTGGAGAATGGGATGTGAAGCAGTAGACCGCAGCCACGCCGATGGTT  2467

Query 1564  --------------------------------------------------------------------------  1563
                                                                                      
Sbjct 2468  ATACAGTGAAGAAGACTTCACCTCTTCCTATTGAGTTTGCTTGGAATGCTGACAGCATCAGGCAACTCTGAACT  2541

Query 1564  --------------------------------------------------------------------------  1563
                                                                                      
Sbjct 2542  GAACATTTGCTTTGTCAGAAAATATCTTTTTTTTTACTTTGAAGTTTGGCAACCTTCATGTTACCCCAAAGCAA  2615

Query 1564  --------------------------------------------------------------------------  1563
                                                                                      
Sbjct 2616  AACCATTGTGTCAGGAGTCAAACAAATGTTTAGAAAGCAAACATGACGTCTCTATTGTACAACCTCCTTTCTCT  2689

Query 1564  --------------------------------------------------------------------------  1563
                                                                                      
Sbjct 2690  TGGCTGTTTAAAGGATGTACTTCGTGTATTAAAGGGTACTTTATGTTGAAGTAACGAAAAAACCCTAATGGGTG  2763

Query 1564  --------------------------------------------------------------------------  1563
                                                                                      
Sbjct 2764  TTCCTAAACCTAAACCTTTTCTTTATTCCACATTTGCTACGGTAAAATCCTGTTACAAAACTACCCTATAAAGA  2837

Query 1564  -----------------------------------  1563
                                               
Sbjct 2838  ATTATTTTCTATAGTTAAGCATTTTCTGAATCCTA  2872

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