Nucleotide Global Alignment

Description

Query:
ccsbBroad304_11394
Subject:
XR_001749742.2
Aligned Length:
3856
Identities:
437
Gaps:
3411

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  ACGTGATCTCGGGTTTGTCGGGCTGAAATGTGGCGGGTCTCGGAAGGTTCCGACCTCAGTAAAGAGAGCTAACG  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  TGTATTCTTCTTTTTCTTAGCGTGTTGCTTTGTCGCCCACGCTGGTTGCAGTGGTGCGATCTCAGTTCACTGCA  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  ACCTTCGCCTCCCAGGTTCAAGCGATTATCCTGCCTCAGCTTCCCGAGCAGCTAGGACTACAGGTGTGTGCCAT  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  CACGCTCAGCTAATTTTTTTGGTATTTTTAGTAGAGATGGGGTTTTCCCATGTTGGCCAGGCTGGTCTCGAACT  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  CCTGACCTCAGATGATCTGCCCGCCTCGGCCTCCCAAAGTGGTAGGATTACAGGCGTGAGCCACTGTGCTCGGC  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  ACATTTTGGTATGTTTCTTATTTAACTTTCTTTTTAAAAAATACTCTATGTGCTTTTTTTTTTTTACATGTATA  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  CCTTATATTGTAGAATATTTTTTAAATGTAATTGAGATTCTATTTTGTTCCTTGCCTTTCTTGCTTAATATAAT  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  TGTCACCATTTAATATAACTGTAGAGCTTTTCACCAGCCCTACTTTCTTGGTCTATTAATACTTGAACTTTTCT  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  TCCTTTAGGATCTCAGCTAAACGGGAAGCATTTTTGAAAAGTGATTGCACAATTGAGAGTGAAAATTACTGAGT  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  CCTGAACAGGCAACTTACATTCTAATACCAGCTCTGTCTCCATCCAGCCGACTGAATAGTCGTGATTAAGTTAC  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  TTGACTTCCTTGGATATCTAGATCCTTAAAGTTAAAGAATTATACAAGATAATAATATTTTCTTCAAACTTTAG  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  AAAATGACTTTATGAACCGCCTTAAGTTTGTATGTTTTCATAGCTTTCAAGAGCTTGTTTACACACTCAATTCT  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  AGATTCTAGATACTTTCTAGAAAATAACTGACTTAACTCATTCAATTGATATATTTGTTAGTTGTACTCCTACT  962

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  963  CATATGCTTCAGTTAATTATATATGTTGAACAGGTAGGAAGCAGTGCTGTTTTTATTTATTTTAATATGTTATT  1036

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1037  CATACATTTGAAGAATTATGTTCTTTCTGTAGGCAGCTGAATTTTTTTTTTTTTTGAGACGAAGTCTTGGTATT  1110

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1111  GTCCCCCTTGCTGGAGTGCAATGGCATGATCTCGGCTCACTGCAACCTCTGCCTCCTGGGTTCAGGCAATTCTC  1184

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1185  CTGCCTCAGACTCCTGAGTAGCTGGGATTACAGGCGCCTGCCACCACGCCCGGATAATTTTTGTATTTTTAGTA  1258

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1259  GAGACAGTGTTTCACTATGTTGGCTGGGCTGGTCTCGAACTCCTGCCCTCAGGTGATCCGCCTGCCTCAGCCTC  1332

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1333  CCAAAGTGCTGGGATTACTGGCGTGAGCCACTGCTGCCAGCCGGCAGTTGAATTTTAAGACTGTGGAGCTGGCT  1406

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1407  GAGGCAGTAGATGAAACAAGATTTCTTGATGTTCCTTCCAGGTTTATTATGCATGTATCTTTAGAGATGATTTT  1480

Query    1  --------------------------------------ATGAATCGTCACCTGTGTGTTTGGCTTTTTAGACAT  36
                                                  ||||||||||||||||||||||||||||||||||||
Sbjct 1481  TTTTTAAAGACTGTGTTTATTGTATTTCAGATGCTGAGATGAATCGTCACCTGTGTGTTTGGCTTTTTAGACAT  1554

Query   37  CCATCTCTTAATGGTTACCTCCAGTGTCACATCCAGCTCCATTCTCATCAATTTAGACAGATACATCTTGATAC  110
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555  CCATCTCTTAATGGTTACCTCCAGTGTCACATCCAGCTCCATTCTCATCAATTTAGACAGATACATCTTGATAC  1628

Query  111  AAGGCTGCAAGTTTTTAGACAAAACAGGAATTGCATTCTTCATCTGTTAAGTAAGAATTGGTCCAGGAGATATT  184
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1629  AAGGCTGCAAGTTTTTAGACAAAACAGGAATTGCATTCTTCATCTGTTAAGTAAGAATTGGTCCAGGAGATATT  1702

Query  185  GCCATCAAGACACCAAGATGCTCTGGAAGCATAAAGCACTACAGAAATATATGGAGAACCTGAGTAAGGAGTAC  258
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1703  GCCATCAAGACACCAAGATGCTCTGGAAGCATAAAGCACTACAGAAATATATGGAGAACCTGAGTAAGGAGTAC  1776

Query  259  CAAACACTTGAGCAATGTCTGCAGCATATCCCTGTGAATGAGGAAAACCGAAGGTCCTTGAACAGAAGGCATGC  332
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1777  CAAACACTTGAGCAATGTCTGCAGCATATCCCTGTGAATGAGGAAAACCGAAGGTCCTTGAACAGAAGGCATGC  1850

Query  333  TGAGTTGGCACCTCTTGCAGCCATTTACCAAGAAATTCAGGAGACTGAACAAGCAATTGAAGAATTAGAATCAA  406
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1851  TGAGTTGGCACCTCTTGCAGCCATTTACCAAGAAATTCAGGAGACTGAACAAGCAATTGAAGAATTAGAATCAA  1924

Query  407  TGTGTAAAA--------AGACA----------GAGT--------CTTGCTCTGTGGCCCAGGCTGGAATGCAG-  453
            |||||||||        |.|||          .|||        |||||.||        ||..|.||.|||. 
Sbjct 1925  TGTGTAAAAGCCTAAATAAACAAGATGAAAAGCAGTTACAAGAACTTGCACT--------GGAAGAAAGGCAAA  1990

Query  454  --------------------------------------------------------------------------  453
                                                                                      
Sbjct 1991  CCATTGATCAAAAAATCAACATGTTGTACAATGAGCTTTTCCAGAGCCTTGTGCCAAAGGAGAAATATGACAAA  2064

Query  454  --------------------------------------------------------------------------  453
                                                                                      
Sbjct 2065  AATGATGTTATTTTAGAGGTGACAGCTGGAAGGACTACTGGAGGTGACATCTGCCAACAATTTACCCGAGAAAT  2138

Query  454  --------------------------------------------------------------------------  453
                                                                                      
Sbjct 2139  ATTTGACATGTACCAGAATTATTCGTGCTATAAACACTGGCAATTTGAACTTCTGAATTATACACCAGCAGATT  2212

Query  454  --------------------------------------------------------------------------  453
                                                                                      
Sbjct 2213  ATGGTGGACTACATCATGCAGCCGCCCGAATTTCCGGTGACGGTGTCTATAAGCATTTGAAGTATGAGGGTGGG  2286

Query  454  --------------------------------------------------------------------------  453
                                                                                      
Sbjct 2287  ATTCACCGAGTTCAGCGCATCCCCGAGGTGGGCCTGTCCTCAAGGATGCAGCGCATTCACACAGGAACGATGTC  2360

Query  454  --------------------------------------------------------------------------  453
                                                                                      
Sbjct 2361  GGTTATTGTCCTTCCTCAGCCAGATGAGGTGGATGTGAAATTGGACCCCAAGGATTTGCGAATAGATACATTTC  2434

Query  454  --------------------------------------------------------------------------  453
                                                                                      
Sbjct 2435  GAGCCAAAGGAGCAGGAGGGCAGCATGTTAATAAAACTGATAGTGCCGTCAGACTTGTCCACATCCCCACAGGC  2508

Query  454  --------------------------------------------------------------------------  453
                                                                                      
Sbjct 2509  ATAATCTCGGCTGACTGCAACCTCCGCCTCCCAGGTTCAAGCGATTCTCCTGCCTCAGCCTCCCAAGTAGCTGG  2582

Query  454  --------------------------------------------------------------------------  453
                                                                                      
Sbjct 2583  GACTACAGGCACATGCCACCACGCCTGGCTAATTTTTTGTATTTTTAGAGATGGGGTTTCACTGTGTTATCCAG  2656

Query  454  --------------------------------------------------------------------------  453
                                                                                      
Sbjct 2657  TATGGTCGTGATCTCCTGACCTTGTGATCCACCCGCCTTGCCTTCCCAAAATCCTCGGATTACAGGTGTGAGCC  2730

Query  454  --------------------------------------------------------------------------  453
                                                                                      
Sbjct 2731  ACTGCGCCCAGCCATTATAAAGGGCTAGTAGTAGAATGCCAACAAGAAAGATCACAGATAAAAAATAAAGAAAT  2804

Query  454  --------------------------------------------------------------------------  453
                                                                                      
Sbjct 2805  AGCCTTTCGTGTGTTGAGAGCTAGACTCTACCAGCAGATTATTGAGAAAGACAAGCGTCAGCAACAAAGTGCTA  2878

Query  454  --------------------------------------------------------------------------  453
                                                                                      
Sbjct 2879  GAAAACTGCAGGTGGGAACAAGAGCCCAGTCAGAGCGAATTCGGACATATAATTTCACCCAGGATAGAGTCAGT  2952

Query  454  --------------------------------------------------------------------------  453
                                                                                      
Sbjct 2953  GACCACAGGATAGCATATGAAGTTCGTGATATTAAGGAATTTTTATGTGGTGGGAAGGGCCTGGATCAGCTAAT  3026

Query  454  --------------------------------------------------------------------------  453
                                                                                      
Sbjct 3027  TCAGAGACTGCTTCAATCAGCAGATGAAGAAGCCATTGCTGAACTTTTGGATGAACACCTTAAATCAGCAAAAT  3100

Query  454  --------------------------------------------------------------------------  453
                                                                                      
Sbjct 3101  AAATACTAACTTATTATTATTTATGATTATATAAATGAAATGGACCTATATCAAGAGGCAGACTGAAGCTTGGA  3174

Query  454  --------------------------------------------------------------------------  453
                                                                                      
Sbjct 3175  AATCATTATGAATATTTGTAAATTACAGCTTTAAGAACACATTACACATAAATATATGTTTTGTAATTAATCGA  3248

Query  454  --------------------------------------------------------------------------  453
                                                                                      
Sbjct 3249  AGTCACATTTCCTGACCTAAGAATTTATTTTAGGTTTCCTGTAAAGTACAATCCAACTCATCAAGTAGAAAATA  3322

Query  454  --------------------------------------------------------------------------  453
                                                                                      
Sbjct 3323  AGCATGCATCATTGAAAAGAGAAAGTATTGAGAATTGATTGTGTCATTTAGGACAAGTCACTTGTTCTCTTTAT  3396

Query  454  --------------------------------------------------------------------------  453
                                                                                      
Sbjct 3397  ATGCCTTTTTTCCCCAGCCATCTATGAATTAATTTAAATATATTTTTAATCTACTACTTCAGGAAAATATGGTA  3470

Query  454  --------------------------------------------------------------------------  453
                                                                                      
Sbjct 3471  AAATTTAGTAAAATATGAATTTTAGACTTCCTTATAAACCTTTTATTTAAATACAAAGTACCTTGGCCTATAGT  3544

Query  454  --------------------------------------------------------------------------  453
                                                                                      
Sbjct 3545  GGATGCTTATGCCTGTAATCCCAGTGCTTTGAAGGGCCAAAGGGGGAAGATCTCTTGAGGTAAGAATTTGAGAC  3618

Query  454  --------------------------------------------------------------------------  453
                                                                                      
Sbjct 3619  CAGCCTGGGCAAAATAGACCCCATGTCTACAAAAAAACTCAAAACATAAAGAAAAACCATAATACTGTTAATCA  3692

Query  454  --------------------------------------------------------------------------  453
                                                                                      
Sbjct 3693  TGTTAAAGTTAAGACTTAGACTGCAACTTTTAAATAAAAATTATGAAGAATATGAGTCATTCAATAACAATGAG  3766

Query  454  --------------------------------------------------------------------------  453
                                                                                      
Sbjct 3767  CATCTGGGTACAGACAGTAAAGCCCTTTGATTGCTGTATGAATTCCACACTATATAAACAATAAGCTGATATTT  3840

Query  454  --------  453
                    
Sbjct 3841  TAAATAGA  3848

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