Nucleotide Global Alignment

Description

• Query: ccsbBroad304_11406
• Subject: NM_001310721.1
• Aligned Length: 1424
• Identities: 719
• Gaps: 616

Alignment

Query    1  ATGGCGGCGGCGTCTGTCTCTGCGGCTTCTGGTTCTCACTTGTCGAACAGCTTTGCTGAGCCATCAAGGTCTAA  74
            ||||||||.||.||.|||||.||||||||||.||||||.||.||||.|..|.|.|||||.||||||||||||||
Sbjct    1  ATGGCGGCAGCCTCGGTCTCGGCGGCTTCTGATTCTCAGTTTTCGAGCGTCCTAGCTGAACCATCAAGGTCTAA  74

Query   75  TGGAAGCATGGTTCGGCATTCTTCATCTCCATATGTAGTATATCCTTCGGATAAGCCTTTCCTTAATAGTGATC  148
            |||||..||||||||.||||||||.||||||||||||.|.|||||..|.|||||||||||||||||.|||||||
Sbjct   75  TGGAAATATGGTTCGTCATTCTTCGTCTCCATATGTATTGTATCCACCTGATAAGCCTTTCCTTAACAGTGATC  148

Query  149  TACGACGCTCCCCAAGTAAGCCTACACTTGCCTATCCAGAAAGCAACAGCAGAGCCATATTTTCTGCTCTTAAG  222
            |..||||||||||||.||||||.|||.||||||||||.||||||||||||||||||||||||||||||||||||
Sbjct  149  TGAGACGCTCCCCAAATAAGCCCACATTTGCCTATCCGGAAAGCAACAGCAGAGCCATATTTTCTGCTCTTAAG  222

Query  223  AATCTTCAAGATAAGATTCGACGCTTGGAACTTGAGAGGATTCAGGCAGAAGAAAGTGTGAAAACCTTGTCTAG  296
            ||||||||||||||||||||||||.|||||||.||.||||||||||||||||||||||||||||||||||||||
Sbjct  223  AATCTTCAAGATAAGATTCGACGCCTGGAACTGGAAAGGATTCAGGCAGAAGAAAGTGTGAAAACCTTGTCTAG  296

Query  297  AGAAACAATTGAATATAAGAAAGTACTGGATGAACAGATACAAGAAAGGGAGAATTCAAAGAATGAGGAATCAA  370
            .|||||.|||||.||.|||||||||.|||||||||||||.|||||.||||||||.|||||||||||.|||||||
Sbjct  297  GGAAACCATTGAGTACAAGAAAGTATTGGATGAACAGATCCAAGAGAGGGAGAACTCAAAGAATGAAGAATCAA  370

Query  371  AGCACAATCAAGAACTGACATCTCAGTTGTTAGCTGCAGAAAATAAATGCAATCTATTAGAAAAACAATTGGAA  444
            |||||||||||||||||.||||.||||||.|||||||||||||||||||.|||||..|||||||||||||||||
Sbjct  371  AGCACAATCAAGAACTGGCATCCCAGTTGGTAGCTGCAGAAAATAAATGTAATCTTCTAGAAAAACAATTGGAA  444

Query  445  TACATGCGAAATATGATAAAGCATGCCGAAATGGAGAGGACATCTGTCTTAGAGAAACAAGTTTCCCTAGAAAG  518
            ||||||||||||||||||||||||||.||||||||||||||||||||.|||||.||.||.|||||.||||||||
Sbjct  445  TACATGCGAAATATGATAAAGCATGCAGAAATGGAGAGGACATCTGTGTTAGAAAAGCAGGTTTCTCTAGAAAG  518

Query  519  AGAACGACAACATGATCAAACACATGTTCAGAGCCAACTTGAAAAATTGGATCTTCTTGAACAGGAGTATAACA  592
            ||||||.||.|||||||||||.||||||||||||||.||.||||||.|||||||||||||||||||.||.||||
Sbjct  519  AGAACGGCAGCATGATCAAACCCATGTTCAGAGCCAGCTGGAAAAACTGGATCTTCTTGAACAGGAATACAACA  592

Query  593  AACTTACCACAATGCAGGCCCTTGCAGAAAAAAAAATGCAAGAGTTGGAAGCAAAACTCCATGAAGAAGAACAG  666
            ||||.|||.|.|||||||||||||||||||||||.|||||.||||||||..|.|||||||.|||||||||.|||
Sbjct  593  AACTCACCGCCATGCAGGCCCTTGCAGAAAAAAAGATGCAGGAGTTGGAGTCCAAACTCCGTGAAGAAGAGCAG  666

Query  667  GAAAGGAAACGCATGCAAGCTAAGGCAGCTGAGTTGCAGACTGGTCTAGAAACAAATAGACTTATCTTTGAAGA  740
            ||||||||.||.|||||.||...||||||.|||||.||||.||||||||||.|||||||||||||.||||||||
Sbjct  667  GAAAGGAAGCGGATGCAGGCCCGGGCAGCAGAGTTACAGAGTGGTCTAGAAGCAAATAGACTTATTTTTGAAGA  740

Query  741  TAAGGCAACTCCGTGTGTT---CCCAATGCA--AGAAGAATTAAAAAAAAGAAGTCAAAACCACCAGAAAAG--  807
            ||||.|.|||.|.||||||   .|||  |||  ||||.|||.||||||||||||||||||||||||||||||  
Sbjct  741  TAAGACTACTTCATGTGTTTCAACCA--GCACTAGAAAAATAAAAAAAAAGAAGTCAAAACCACCAGAAAAGTC  812

Query  808  -------------------GTG----------------------------------------------------  810
                               |||                                                    
Sbjct  813  CACCAGTCCCAGCCATGCCGTGGTAGCCAATGTTCAGCATGTCTTGCATCTGATGAAACACCACAGTAAAGCCC  886

Query  811  --------------------------------------------------------------------------  810
                                                                                      
Sbjct  887  TGTGCAATGATCGAGTTGTTAACAGTGTTCCCTTGGCAAAGCAAGCTTGCTCACGAGTTAGTAAGAGTAAGAAG  960

Query  811  --------------------------------------------------------------------------  810
                                                                                      
Sbjct  961  TCAGTGGTGCCTCCTTCCAGCAGTGTTAATGAAGAACTTTCGGATGTCTTGCAGACTTTACAGGATGAATTTGG  1034

Query  811  --------------------------------------------------------------------------  810
                                                                                      
Sbjct 1035  GCAAATGAGCTTTGATCATCAGCAGCTTACTAAACTCATACAGGAATCACCAACTGTGGAACTAAAAGACAACC  1108

Query  811  --------------------------------------------------------------------------  810
                                                                                      
Sbjct 1109  TGGAGTGTGAATTGGAGGCATTAGTGGGAAGAATGGAAGCGAAGGCCAATCAGATAACTAAAGTTCGAAAATAC  1182

Query  811  --------------------------------------------------------------------------  810
                                                                                      
Sbjct 1183  CAAGCCCAGCTGGAGAAACAAAACATAGATAAGCAGAAGAAGGAATTAAAAGCTAACAAAAAGACTCTTGATGA  1256

Query  811  --------------------------------------------------------------------------  810
                                                                                      
Sbjct 1257  AGAAGGGAACAGCAGCGGTCGTTCATCTGGAGTCCCAAGGACCGCAAGTAAGAAGGATCTGGCCAAACAGAGAC  1330

Query  811  --------------------------------------------------------------------------  810
                                                                                      
Sbjct 1331  CTGGAGAAAAAAGCAGGAAAAATCTTCAGTTACTGAAGGACATGCAGACCATACAGAATTCACTGCAGAGCAGT  1404

Query  811  ------------------  810
                              
Sbjct 1405  AATCTGTGTTGGGATTAC  1422