Nucleotide Global Alignment

Description

• Query: ccsbBroad304_11425
• Subject: XM_017005417.1
• Aligned Length: 3172
• Identities: 1765
• Gaps: 1388

Alignment

Query    1  ATGGGGGAGATAGAAGGAACATACAGAGTCCTGCAGACTGCAGGGATGCGCTTGGGTGCCCAGACCCCTGTGGG  74
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query   75  AGTTAGCACCCTTGAGCCTGGGCAGACTCTCTTGCCCAGAATGCAAGAGAAGCACCTGCACCTCAGAGTAAAGC  148
                                                                                     .
Sbjct    1  -------------------------------------------------------------------------A  1

Query  149  TGCTGGACAA-----CACCATGGAAATATTTGACAT-TGAGCCTAAATGCGATGGCCAGGTATTACTGACACAA  216
            ||.||   ||     ||||.|..||..|.||   || |.|||||||||||||||||||||||||||||||||||
Sbjct    2  TGTTG---AATTGCCCACCTTTTAATAACTT---ATGTCAGCCTAAATGCGATGGCCAGGTATTACTGACACAA  69

Query  217  GTGTGGAAGCGTTTAAACCTGGTAGAATGTGACTACTTCGGGATGGAGTTTCAAAATACTCAGTCCTACTGGAT  290
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct   70  GTGTGGAAGCGTTTAAACCTGGTAGAATGTGACTACTTCGGGATGGAGTTTCAAAATACTCAGTCCTACTGGAT  143

Query  291  TTGGCTTGAACCTATGAAACCCATCATTAGGCAAATACGAAGGCCAAAGAATGTGGTGCTTCGCCTAGCTGTAA  364
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  144  TTGGCTTGAACCTATGAAACCCATCATTAGGCAAATACGAAGGCCAAAGAATGTGGTGCTTCGCCTAGCTGTAA  217

Query  365  AATTTTTTCCACCTGATCCTGGTCAGCTACAAGAAGAATATACAAGATACTTGTTTGCCTTGCAACTTAAGAGA  438
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  218  AATTTTTTCCACCTGATCCTGGTCAGCTACAAGAAGAATATACAAGATACTTGTTTGCCTTGCAACTTAAGAGA  291

Query  439  GACCTGCTGGAAGAGCGTTTGACCTGTGCTGACACCACAGCGGCCCTTCTCACGTCCCATCTCCTGCAGTCGGA  512
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  292  GACCTGCTGGAAGAGCGTTTGACCTGTGCTGACACCACAGCGGCCCTTCTCACGTCCCATCTCCTGCAGTCGGA  365

Query  513  AATAGGAGATTACGATGAAACGCTGGACCGAGAGCACCTCAAAGTGAACGAGTATTTGCCTGGCCAGCAGCACT  586
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  366  AATAGGAGATTACGATGAAACGCTGGACCGAGAGCACCTCAAAGTGAACGAGTATTTGCCTGGCCAGCAGCACT  439

Query  587  GCCTTGAGAAGATACTAGAATTCCATCAGAAGCACGTGGGCCAGACACCTGCTGAGTCGGATTTCCAGGTGCTC  660
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  440  GCCTTGAGAAGATACTAGAATTCCATCAGAAGCACGTGGGCCAGACACCTGCTGAGTCGGATTTCCAGGTGCTC  513

Query  661  GAAATTGCTCGAAAGTTGGAAATGTACGGCATCAGATTTCACATGGCTTCTGACAGGGAAGGAACCAAGATTCA  734
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  514  GAAATTGCTCGAAAGTTGGAAATGTACGGCATCAGATTTCACATGGCTTCTGACAGGGAAGGAACCAAGATTCA  587

Query  735  ACTGGCAGTTTCCCACATGGGTGTACTCGTGTTCCAGGGCACCACCAAAATCAACACTTTCAACTGGTCCAAGG  808
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  588  ACTGGCAGTTTCCCACATGGGTGTACTCGTGTTCCAGGGCACCACCAAAATCAACACTTTCAACTGGTCCAAGG  661

Query  809  TCCGTAAACTAAGCTTCAAGAGGAAAAGATTTCTTATCAAACTTCATCCAGAGGTTCATGGACCTTACCAGGAC  882
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  662  TCCGTAAACTAAGCTTCAAGAGGAAAAGATTTCTTATCAAACTTCATCCAGAGGTTCATGGACCTTACCAGGAC  735

Query  883  ACATTAGAATTTTTGTTGGGTAGTAGAGATGAATGTAAGAACTTCTGGAAGATTTGTGTGGAGTATCACACCTT  956
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  736  ACATTAGAATTTTTGTTGGGTAGTAGAGATGAATGTAAGAACTTCTGGAAGATTTGTGTGGAGTATCACACCTT  809

Query  957  TTTTAGACTTTTGGACCAACCTAAGCCAAAAGCAAAAGCCGTCTTCTTCAGCCGGGGCTCCTCCTTCAGATACA  1030
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  810  TTTTAGACTTTTGGACCAACCTAAGCCAAAAGCAAAAGCCGTCTTCTTCAGCCGGGGCTCCTCCTTCAGATACA  883

Query 1031  GTGGAAGAACTCAGAAACAACTAGTAGATTATTTCAAAGACAGTGGAATGAAGAGAATTCCATATGAAAGAAGG  1104
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  884  GTGGAAGAACTCAGAAACAACTAGTAGATTATTTCAAAGACAGTGGAATGAAGAGAATTCCATATGAAAGAAGG  957

Query 1105  CACAGCAAGACCCACACGTCCGTTCGAGCTCTGACTGCAGACCTACCAAAACAGAGCATCTCATTCCCCGAGGG  1178
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  958  CACAGCAAGACCCACACGTCCGTTCGAGCTCTGACTGCAGACCTACCAAAACAGAGCATCTCATTCCCCGAGGG  1031

Query 1179  ATTGAGGACTCCTGCCTCCCCATCTTCAGCGAATGCCTTTTACTCGCTCTCTCCCTCCACTCTGGTCCCCTCTG  1252
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1032  ATTGAGGACTCCTGCCTCCCCATCTTCAGCGAATGCCTTTTACTCGCTCTCTCCCTCCACTCTGGTCCCCTCTG  1105

Query 1253  GCCTGCCAGAGTTTAAGGACAGCAGCAGCTCCCTCACAGATCCCCAGGTTTCCTACGTCAAGAGTCCAGCTGCA  1326
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1106  GCCTGCCAGAGTTTAAGGACAGCAGCAGCTCCCTCACAGATCCCCAGGTTTCCTACGTCAAGAGTCCAGCTGCA  1179

Query 1327  GAGAGGCGCAGTGGAGCAGTGGCTGGAGGCCCCGACACACCATCGGCCCAGCCCCTCGGGCCCCCCGCACTCCA  1400
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1180  GAGAGGCGCAGTGGAGCAGTGGCTGGAGGCCCCGACACACCATCGGCCCAGCCCCTCGGGCCCCCCGCACTCCA  1253

Query 1401  GCCTGGTCCAGGCCTTTCCACGAAGAGTCCTCAGCCTTCTCCCTCCAGCCGGAAGAGCCCCCTGAGTCTGAGCC  1474
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1254  GCCTGGTCCAGGCCTTTCCACGAAGAGTCCTCAGCCTTCTCCCTCCAGCCGGAAGAGCCCCCTGAGTCTGAGCC  1327

Query 1475  CTGCATTTCAGGTGCCTTTGGGCCCAGCTGAACAGGGCTCATCCCCACTCCTGAGCCCTGTCCTCAGTGATGCT  1548
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1328  CTGCATTTCAGGTGCCTTTGGGCCCAGCTGAACAGGGCTCATCCCCACTCCTGAGCCCTGTCCTCAGTGATGCT  1401

Query 1549  GGCGGAGCCGGGATGGACTGCGAGGAGCCCAGACACAAGCGCGTGCCTGCAGACGAGGCCTACTTCATAGTCAA  1622
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1402  GGCGGAGCCGGGATGGACTGCGAGGAGCCCAGACACAAGCGCGTGCCTGCAGACGAGGCCTACTTCATAGTCAA  1475

Query 1623  AGAGATTCTCGCTACAGAACGAACATACCTCAAGGATTTAGAAGTTATTACCGTGTGGTTCCGCAGCGCAGTGG  1696
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1476  AGAGATTCTCGCTACAGAACGAACATACCTCAAGGATTTAGAAGTTATTACCGTGTGGTTCCGCAGCGCAGTGG  1549

Query 1697  TGAAGGAGGACGCCATGCCTGCGACTCTGATGACGCTGCTCTTCTCCAACATCGATCCCATCTATGAGTTCCAC  1770
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1550  TGAAGGAGGACGCCATGCCTGCGACTCTGATGACGCTGCTCTTCTCCAACATCGATCCCATCTATGAGTTCCAC  1623

Query 1771  AGAGGCTTCCTGCGCGAGGTGGAGCAGAGGCTGGCACTCTGGGAAGGGCCCTCCAAAGCCCACACAAAAGGCAG  1844
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1624  AGAGGCTTCCTGCGCGAGGTGGAGCAGAGGCTGGCACTCTGGGAAGGGCCCTCCAAAGCCCACACAAAAGGCAG  1697

Query 1845  TCATCAACGAATCGGGGACATCCTGCTCAGGAACATGCGCCAGTTAAAGGTGTT--CCAGCT-CCACGAAGGGC  1915
            ||||||||||||||||||||||||||||||||||||||||||||||||||.|||  |||||| |..|.||.|.|
Sbjct 1698  TCATCAACGAATCGGGGACATCCTGCTCAGGAACATGCGCCAGTTAAAGGAGTTTACCAGCTACTTCCAAAGAC  1771

Query 1916  ATGTAGCA-GGGGTC---ACAAAAATGGAG--------------------------------------------  1941
            |||    | |.||||   |||.||.||||.                                            
Sbjct 1772  ATG----ACGAGGTCCTAACAGAACTGGAAAAGGCTACCAAACGCTGTAAGAAGTTGGAGGCAGTGTACAAGGA  1841

Query 1942  --------------------------------------------------------------------------  1941
                                                                                      
Sbjct 1842  GTTTGAGCTGCAGAAGGTCTGCTACTTGCCTCTCAACACGTTCCTGCTGAAGCCCATCCAGCGGCTGCTGCACT  1915

Query 1942  --------------------------------------------------------------------------  1941
                                                                                      
Sbjct 1916  ACCGCCTGCTGCTGCGCCGCCTATGCGGACATTACAGCCCCGGGCACCATGACTACGCTGACTGCCATGACGCC  1989

Query 1942  --------------------------------------------------------------------------  1941
                                                                                      
Sbjct 1990  CTGAAAGCCATCACAGAGGTGACCACCACACTACAGCACATTCTCATCCGGCTGGAGAACCTGCAGAAGCTAAC  2063

Query 1942  --------------------------------------------------------------------------  1941
                                                                                      
Sbjct 2064  GGAGCTGCAGCGGGACCTGGTGGGCATAGAGAACCTCATTGCTCCTGGCAGGGAGTTCATCCGTGAGGGCTGCC  2137

Query 1942  --------------------------------------------------------------------------  1941
                                                                                      
Sbjct 2138  TTCACAAGCTCACCAAGAAGGGCCTGCAGCAGAGGATGTTTTTTCTGTTCTCAGATATGTTGCTGTACACAAGC  2211

Query 1942  --------------------------------------------------------------------------  1941
                                                                                      
Sbjct 2212  AAAGGAGTTGCAGGGACCAGCCACTTCCGGATCCGGGGCCTCCTTCCCCTCCAAGGCATGCTGGTGGAAGAAAG  2285

Query 1942  --------------------------------------------------------------------------  1941
                                                                                      
Sbjct 2286  TGATAACGAGTGGTCTGTTCCACACTGTTTCACCATCTACGCGGCTCAGAAAACAATCGTGGTGGCAGCCAGCA  2359

Query 1942  --------------------------------------------------------------------------  1941
                                                                                      
Sbjct 2360  CTCGGCTGGAGAAAGAGAAGTGGATGCTGGACCTGAACTCCGCGATCCAAGCAGCCAAGAGTGGCGGTGACACG  2433

Query 1942  --------------------------------------------------------------------------  1941
                                                                                      
Sbjct 2434  GCCCCTGCACTGCCAGGCCGCACTGTGTGCACTCGTCCCCCCAGATCCCCCAACGAGGTATCTCTGGAGCAGGA  2507

Query 1942  --------------------------------------------------------------------------  1941
                                                                                      
Sbjct 2508  GTCAGAAGATGATGCTCGGGGTGTCCGCAGCTCCCTGGAGGGGCATGGCCAGCACCGGGCCAACACCACAATGC  2581

Query 1942  --------------------------------------------------------------------------  1941
                                                                                      
Sbjct 2582  ACGTGTGCTGGTACCGGAACACCAGCGTGTCCAGGGCAGACCACAGTGCAGCTGTCGAGAACCAGCTTTCAGGA  2655

Query 1942  --------------------------------------------------------------------------  1941
                                                                                      
Sbjct 2656  TATCTGCTAAGAAAGTTCAAAAACAGTCATGGCTGGCAGAAGCTCTGGGTCGTCTTTACCAACTTCTGTTTGTT  2729

Query 1942  --------------------------------------------------------------------------  1941
                                                                                      
Sbjct 2730  CTTCTACAAAACTCATCAGGATGACTACCCACTGGCCAGCCTCCCGCTGCTGGGCTACAGCGTGAGCATCCCCA  2803

Query 1942  --------------------------------------------------------------------------  1941
                                                                                      
Sbjct 2804  GGGAGGCCGATGGCATACACAAAGACTATGTTTTCAAGCTCCAGTTCAAATCCCACGTCTACTTCTTCCGGGCT  2877

Query 1942  --------------------------------------------------------------------------  1941
                                                                                      
Sbjct 2878  GAGAGCAAGTACACATTTGAAAGGTGGATGGAGGTGATCCAGGGGGCCAGCAGCTCAGCCGGGAGGGCCCCAAG  2951

Query 1942  ----------------------------------------------------------------  1941
                                                                            
Sbjct 2952  CATCGTGCAGGATGGCCCCCAACCCTCCTCAGGGCTGGAGGGGATGGTCAGGGGGAAGGAGGAA  3015