Nucleotide Global Alignment

Description

Query:
ccsbBroad304_11428
Subject:
NM_001277983.1
Aligned Length:
2614
Identities:
1529
Gaps:
929

Alignment

Query    1  ATGTCGGGACGAACGCTCACGGATCGGATCGCCGCCGCTCAGTACAGCGTTACAGGCTCTGCTGTAGCAAGAGC  74
            ||||||||.|.|||||||||||||||||||||||||||||||||||||||.||.||||||||||||||||||||
Sbjct    1  ATGTCGGGCCAAACGCTCACGGATCGGATCGCCGCCGCTCAGTACAGCGTGACTGGCTCTGCTGTAGCAAGAGC  74

Query   75  GGTCTGCAAAGCCACTACTCATGAAGTAATGGGCCCCAAGAAAAAGCACCTGGACTATTTGATCCAGGCTACCA  148
            .||||||||||||||.||||||||.||.||||||||||||||.|||||||||||||||||||||||||||||||
Sbjct   75  AGTCTGCAAAGCCACCACTCATGAGGTGATGGGCCCCAAGAAGAAGCACCTGGACTATTTGATCCAGGCTACCA  148

Query  149  ACGAGACCAATGTTAATATTCCTCAGATGGCCGACACTCTCTTTGAGCGGGCAACAAACAGTAGCTGGGTGGTT  222
            |.|||||||||||.|||||.|||||||||||||||||.||||||||||||||.||||||||||||||||||||.
Sbjct  149  ATGAGACCAATGTCAATATCCCTCAGATGGCCGACACCCTCTTTGAGCGGGCGACAAACAGTAGCTGGGTGGTG  222

Query  223  GTGTTTAAGGCTTTAGTGACAACACATCATCTCATGGTGCATGGAAATGAGAGATTTATTCAATATTTGGCTTC  296
            ||.|||||.|||||||||||.|||||.|||||||||||||||||||||||||||||||||||.||||||||.||
Sbjct  223  GTATTTAAAGCTTTAGTGACCACACACCATCTCATGGTGCATGGAAATGAGAGATTTATTCAGTATTTGGCCTC  296

Query  297  TAGAAATACACTATTCAATCTCAGCAATTTTTTGGACAAAAGTGGATCCCATGGTTATGATATGTCTACCTTCA  370
            |||.|||||.|||||||||||||||||.|||.|.||.||||||||||||||.|||||||||||||||||.||||
Sbjct  297  TAGGAATACGCTATTCAATCTCAGCAACTTTCTAGATAAAAGTGGATCCCACGGTTATGATATGTCTACGTTCA  370

Query  371  TAAGGCGCTATAGTAGATATTTGAATGAAAAGGCTTTTTCTTACAGACAGATGGCCTTTGATTTTGCCAGGGTG  444
            ||.||||.||.||||||||.|||||||||||||||||.||.||||||||||||||.|||||.||||||||.|||
Sbjct  371  TACGGCGTTACAGTAGATACTTGAATGAAAAGGCTTTCTCCTACAGACAGATGGCATTTGACTTTGCCAGAGTG  444

Query  445  AAGAAAGGGGCCGATGGTGTAATGAGGACAATGGCTCCCGAAAAGCTGCTAAAGAGTATGCCAATACTACAGGG  518
            |||||||||||.||.|||||.||||||||.||||.|||.||||||||.||.||||||||||||||.||.|||||
Sbjct  445  AAGAAAGGGGCTGACGGTGTCATGAGGACGATGGTTCCTGAAAAGCTCCTGAAGAGTATGCCAATCCTGCAGGG  518

Query  519  ACAAATTGATGCACTGCTTGAATTTGATGTGCATCCAAATGAACTAACAAATGGTGTCATAAATGCAGCATTTA  592
            .||.||.|||||||||||.||.||||||||||||||||||||||||||.|||||||||||||||||.|||||||
Sbjct  519  GCAGATCGATGCACTGCTGGAGTTTGATGTGCATCCAAATGAACTAACCAATGGTGTCATAAATGCTGCATTTA  592

Query  593  TGCTTCTTTTCAAAGATCTTATCAAACTTTTTGCTTGCTACAATGATGGTGTTATTAACTTACTCGAAAAGTTT  666
            ||||||||||||||||||||||||||||.|||||||||||||||||.||.||.|||||||||||.|||||.|||
Sbjct  593  TGCTTCTTTTCAAAGATCTTATCAAACTGTTTGCTTGCTACAATGACGGCGTCATTAACTTACTTGAAAAATTT  666

Query  667  TTTGAAATGAAGAAAGGACAATGTAAAGATGCTCTAGAAATTTACAAACGATTTCTAACTAGAATGACACGAGT  740
            ||.||.|||||||||||.|||||.|||||.||.||||||||||||||.||||||||||||||||||||..|.||
Sbjct  667  TTCGAGATGAAGAAAGGTCAATGCAAAGACGCGCTAGAAATTTACAAGCGATTTCTAACTAGAATGACGAGGGT  740

Query  741  GTCTGAATTTCTCAAGGTTG------------------------------------------CAGAGGCTCCCA  772
            |||||||||.||||||||.|                                          ||.|||||||||
Sbjct  741  GTCTGAATTCCTCAAGGTCGCCGAGCAAGTTGGTATTGATAAAGGTGACATTCCCGACCTCACACAGGCTCCCA  814

Query  773  GCAGTCTTATGGAGACGCTTGAACAGCATCTAAATACATTAGAAGGAAAGAAACCTGGAAACAAATCTGGTGCT  846
            ||||||||||||||||.||||||||.|||||||||||..|||||||||||||||||||||||||||||||||||
Sbjct  815  GCAGTCTTATGGAGACCCTTGAACAACATCTAAATACCCTAGAAGGAAAGAAACCTGGAAACAAATCTGGTGCT  888

Query  847  CCCTCTCCATTAAGTAAGTCTTCTCCAGCCACAACTGTTACGTCTCCTAATTCTACACCAGCTAAAACTATTGA  920
            |||||||||.|||||||||||||||||||||||||||||||.|||||||||||||||||||||||||||||.||
Sbjct  889  CCCTCTCCACTAAGTAAGTCTTCTCCAGCCACAACTGTTACATCTCCTAATTCTACACCAGCTAAAACTATCGA  962

Query  921  CACATCCCCACCGGTTGATTTATTTGCAACTGCATCTGCGGCTGTCCCAGTCAGCACTTCTAAACCATCTAGTG  994
            |||||||||.||.|||||..||||||||||.|||||.|||||||.||||||||||.||.||||.|||||.||.|
Sbjct  963  CACATCCCCGCCAGTTGACATATTTGCAACAGCATCCGCGGCTGCCCCAGTCAGCTCTGCTAAGCCATCAAGCG  1036

Query  995  ATCTCCTGGACCTCCAGCCAGACTTTTCCTCTGGA---------GGGGCAGCAGCA------------------  1041
            |||||||.||.||.|||||.|||||   |||||||         ||||||||||||                  
Sbjct 1037  ATCTCCTTGATCTTCAGCCCGACTT---CTCTGGAGCAGCTGCGGGGGCAGCAGCACCTGTAGTGCCTCCTTCT  1107

Query 1042  ------------------------------GCCGCA--------------------------------------  1047
                                          ||.|||                                      
Sbjct 1108  GGGGGTGCGACCGCCTGGGGAGATTCCTTGGCTGCACTTTCCTCTGTTCCCTGTGAAGCACCGATTTCAGACCC  1181

Query 1048  ----GCACCAG----------------------------------------------------CACCAC-----  1060
                |||||||                                                    ||||||     
Sbjct 1182  ATTTGCACCAGAGCCTTCCCCTCCTACTACAACCACTGAGCCTGCTTCAGCCTCTGCCTCGACCACCACAGCTG  1255

Query 1061  --------------------------------------------------------------------------  1060
                                                                                      
Sbjct 1256  TGACGGCTGTCACTACGGAAGTGGATCTCTTTGGAGATGCCTTTGCAGCTTCTCCTGGGGAGGCCCCTGCAGCA  1329

Query 1061  ----------------CACCACCT--------------------------------------------------  1068
                            |||||.||                                                  
Sbjct 1330  TCCGAAGGGGCTACCGCACCAGCTACCCCGGCCCCAGTGGCTGCAGCTCTTGATGCATGCTCAGGAAATGACCC  1403

Query 1069  ---------------------------------------GCTGGA-----------------------------  1074
                                                   ||||||                             
Sbjct 1404  TTTTGCCCCATCTGAAGGTAGCGCAGAGGCTGCACCTGAGCTGGACCTCTTTGCAATGAAGCCACCTGAGACCA  1477

Query 1075  --------------------------------------------------------------------------  1074
                                                                                      
Sbjct 1478  GCGCTCCTGTAGTTACCCCTACAGCTAGCACAGCCCCTCCAGTTCCCGCAACTGCTCCTTCTCCTGCTCCCACG  1551

Query 1075  ------GGAGCCACTGC---------------------------------------------------------  1085
                  |.|||||||||                                                         
Sbjct 1552  GCTGTGGCAGCCACTGCTGCCACCACCACCGCCGCCGCTGCAGCTACCACCACTGCCACCACCTCTGCTGCTGC  1625

Query 1086  --------------------------------------------------------------------------  1085
                                                                                      
Sbjct 1626  TGCCACCACCGCCGCTGCTCCTCCTGCTCTAGATATCTTTGGTGATTTGTTTGATTCTGCTCCTGAAGTTGCTG  1699

Query 1086  ------------------------------------------------ATG-----------------------  1088
                                                            |||                       
Sbjct 1700  CAGCACCTAAGCCAGACGCGGCTCCTAGCATAGACCTGTTTGGCACAGATGCTTTCTCCTCCCCGCCACGAGGG  1773

Query 1089  --------------------------------------------------------------------------  1088
                                                                                      
Sbjct 1774  GCCTCTCCGGTGCCTGAGAGTTCTCTCACTGCTGACCTCTTATCTGTGGACGCATTTGCAGCGCCGTCTCCTGC  1847

Query 1089  ----------------------------------------------------GGGAGGATTTGGGGGTTCTTTC  1110
                                                                ||| ||||||||||||||||||
Sbjct 1848  ATCCACTGCCTCTCCTGCAAAGGCGGAGTCCTCGGGTGTCATAGACCTTTTTGGG-GGATTTGGGGGTTCTTTC  1920

Query 1111  ATGGCGCCTTCCCCATCTCCAGTGACTCCAGCTCAGAATAACCTGCTACAGCCCAATTTTGAGGCAGCTTTTGG  1184
            |||||.|||||..||.|.|||||||||||||||||||||||||||||.||.||||.|||.||||||||||||||
Sbjct 1921  ATGGCCCCTTCTACAACGCCAGTGACTCCAGCTCAGAATAACCTGCTGCAACCCAGTTTCGAGGCAGCTTTTGG  1994

Query 1185  GACAACGCCTTCAACTTCCAGCAGCAGCTCCTTTGATCCATCAGTGTTTGATGGTCTAGGTGATCTTTTGATGC  1258
            .||.||||||||.|||||.|||||||||||.|||||.||||||||||||||||||.||||.||||||.||||||
Sbjct 1995  AACGACGCCTTCGACTTCAAGCAGCAGCTCTTTTGACCCATCAGTGTTTGATGGTTTAGGCGATCTTCTGATGC  2068

Query 1259  CAACCATGGCACCAGCTGGGCAGCCTGCACCTGTCTCAATGGTACCACCCAGTCCTGCAATGGCAGCCAGCAAA  1332
            ||||||||||||||.|.|||||||||||.||||||||||||||.||||||||||||||||||||||||||||||
Sbjct 2069  CAACCATGGCACCATCCGGGCAGCCTGCCCCTGTCTCAATGGTCCCACCCAGTCCTGCAATGGCAGCCAGCAAA  2142

Query 1333  GCCCTTGGAAGTGATCTTGATTCATCTCTTGCCAGCTTAGTAGGCAATCTTGGAATTTCTGGTACCACAACAAA  1406
            |.|||.||||||||.|||||.||.|||||.|||||.|||||||||||||||||.|||||||||||||||.||||
Sbjct 2143  GGCCTCGGAAGTGACCTTGACTCGTCTCTGGCCAGTTTAGTAGGCAATCTTGGGATTTCTGGTACCACATCAAA  2216

Query 1407  AAAGGGAGATCTTCAGTGGAATGCTGGAGAGAAAAAGTTGACTGGTGGAGCCAACTGGCAGCCTAAAGTAGCTC  1480
            ||||||||||||.||||||||||||||.|||||||||.||||||||||||||||||||||.||.|||||..|||
Sbjct 2217  AAAGGGAGATCTCCAGTGGAATGCTGGGGAGAAAAAGCTGACTGGTGGAGCCAACTGGCAACCGAAAGTCACTC  2290

Query 1481  CAGCAACCTGGTCAGCAGGCGTTCCACCAAGTGCACCTTTGCAAGGAGCTGTACCTCCAACCAGTTCAGTTCCT  1554
            ||||.||.||||||||.||.|||||.||                                              
Sbjct 2291  CAGCCACATGGTCAGCGGGTGTTCCCCC----------------------------------------------  2318

Query 1555  CCTGTTGCCGGGGCCCCATCGGTTGGACAACCTGGAGCAGGATTTGGAATGCCTCCTGCTGGGACAGGCATGCC  1628
                                                              |||||||.|.||||||||||||.|
Sbjct 2319  --------------------------------------------------GCCTCCTTCAGGGACAGGCATGAC  2342

Query 1629  CATGATGCCTCAGCAGCCGGTCATGTTTGCACAGCCCATGATGAGGCCCCCCTTTGGAGCTGCCGCTGTACCTG  1702
            |||||||.||||||||||.|||||||||||||||||||||||||||||.||||||||||||||.|||||.||.|
Sbjct 2343  CATGATGTCTCAGCAGCCAGTCATGTTTGCACAGCCCATGATGAGGCCACCCTTTGGAGCTGCAGCTGTGCCCG  2416

Query 1703  GCACGCAGCTTTCTCCAAGCCCTACACCTGCCAGTCAGAGTCCCAAGAAACCTCCAGCAAAGGACCCATTAGCG  1776
            ||||.||||||||||||||||||||||||||||.||||||||||||||||||||||||.||||||||.||||||
Sbjct 2417  GCACACAGCTTTCTCCAAGCCCTACACCTGCCACTCAGAGTCCCAAGAAACCTCCAGCCAAGGACCCGTTAGCG  2490

Query 1777  GATCTTAAC---------------  1785
            |||||||||               
Sbjct 2491  GATCTTAACATCAAGGATTTCTTG  2514

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