Nucleotide Global Alignment

Description

Query:
ccsbBroad304_11459
Subject:
NM_001352071.2
Aligned Length:
3297
Identities:
2885
Gaps:
384

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  ATGGCAGCCAGACGAATTACACAGGAGACTTTTGATGCTGTATTACAAGAAAAAGCCAAACGATATCACATGGA  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  TGCCAGTGGTGAGGCTGTAAGCGAAACTCTTCAGTTTAAAGCTCAAGATCTCTTAAGGGCAGTCCCAAGATCCA  148

Query    1  --------ATGTATGATGACGTCCACAGCGATGGCAGATACTCCCTCAGTGGATCTGTAGCTCACTCTAGAGAT  66
                    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  149  GAGCAGAGATGTATGATGACGTCCACAGCGATGGCAGATACTCCCTCAGTGGATCTGTAGCTCACTCTAGAGAT  222

Query   67  GCCGGAAGAGAAGGCCTGAGAAGTGACGTATTTCCAGGGCCTTCCTTCAGATCAAGCAACCCTTCCATCAGTGA  140
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  223  GCCGGAAGAGAAGGCCTGAGAAGTGACGTATTTCCAGGGCCTTCCTTCAGATCAAGCAACCCTTCCATCAGTGA  296

Query  141  TGACAGCTACTTTCGCAAAGAATGTGGCCGGGATCTGGAATTTTCTCACTCTGATTCTCGGGACCAGGTCATTG  214
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  297  TGACAGCTACTTTCGCAAAGAATGTGGCCGGGATCTGGAATTTTCTCACTCTGATTCTCGGGACCAGGTCATTG  370

Query  215  GCCACCGGAAATTGGGGCATTTCCGTTCTCAGGACTGGAAATTTGCGCTCCGTGGTTCTTGGGAACAAGACTTT  288
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  371  GCCACCGGAAATTGGGGCATTTCCGTTCTCAGGACTGGAAATTTGCGCTCCGTGGTTCTTGGGAACAAGACTTT  444

Query  289  GGCCATCCAGTTTCTCAAGAGTCCTCTTGGTCACAGGAGTATAGTTTTGGTCCCTCTGCAGTTTTGGGGGACTT  362
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  445  GGCCATCCAGTTTCTCAAGAGTCCTCTTGGTCACAGGAGTATAGTTTTGGTCCCTCTGCAGTTTTGGGGGACTT  518

Query  363  TGGATCTTCCAGGCTGATTGAGAAAGAGTGTTTGGAGAAGGAGAGTCGGGATTATGACGTGGACCATCCTGGGG  436
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  519  TGGATCTTCCAGGCTGATTGAGAAAGAGTGTTTGGAGAAGGAGAGTCGGGATTATGACGTGGACCATCCTGGGG  592

Query  437  AGGCTGACTCTGTGCTTAGGGGCAGCAGTCAAGTCCAGGCCAGAGGTCGAGCTCTAAACATCGTTGACCAGGAA  510
            |||||||||||||||||||||||.||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  593  AGGCTGACTCTGTGCTTAGGGGCGGCAGTCAAGTCCAGGCCAGAGGTCGAGCTCTAAACATCGTTGACCAGGAA  666

Query  511  GGTTCCCTCCTAGGAAAGGGGGAGACTCAGGGCCTGCTCACAGCTAAGGGGGGTGTTGGGAAACTTGTCACATT  584
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  667  GGTTCCCTCCTAGGAAAGGGGGAGACTCAGGGCCTGCTCACAGCTAAGGGGGGTGTTGGGAAACTTGTCACATT  740

Query  585  GAGAAATGTGAGCACAAAAAAAATACCCACCGTGAATCGTATTACTCCCAAAACTCAGGGCACTAACCAAATCC  658
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  741  GAGAAATGTGAGCACAAAAAAAATACCCACCGTGAATCGTATTACTCCCAAAACTCAGGGCACTAACCAAATCC  814

Query  659  AGAAAAACACTCCAAGTCCTGATGTGACCCTGGGGACAAACCCAGGGACAGAAGATATCCAGTTCCCCATTCAG  732
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  815  AGAAAAACACTCCAAGTCCTGATGTGACCCTGGGGACAAACCCAGGGACAGAAGATATCCAGTTCCCCATTCAG  888

Query  733  AAGATCCCTCTGGGGCTGGATCTGAAGAATCTTCGGCTCCCCAGAAGAAAGATGAGCTTTGACATCATAGATAA  806
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  889  AAGATCCCTCTGGGGCTGGATCTGAAGAATCTTCGGCTCCCCAGAAGAAAGATGAGCTTTGACATCATAGATAA  962

Query  807  GTCTGATGTTTTTTCAAGATTTGGGATAGAAATAATCAAATGGGCAGGATTCCACACCATAAAAGATGATATTA  880
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  963  GTCTGATGTTTTTTCAAGATTTGGGATAGAAATAATCAAATGGGCAGGATTCCACACCATAAAAGATGATATTA  1036

Query  881  AATTTTCCCAACTTTTCCAGACTCTCTTTGAACTTGAAACAGAAACCTGTGCTAAAATGCTTGCCTCATTCAAA  954
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037  AATTTTCCCAACTTTTCCAGACTCTCTTTGAACTTGAAACAGAAACCTGTGCTAAAATGCTTGCCTCATTCAAA  1110

Query  955  TGTTCCTTAAAACCAGAGCACAGAGATTTTTGCTTTTTTACTATCAAATTTTTAAAGCACTCTGCTTTGAAAAC  1028
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111  TGTTCCTTAAAACCAGAGCACAGAGATTTTTGCTTTTTTACTATCAAATTTTTAAAGCACTCTGCTTTGAAAAC  1184

Query 1029  ACCCAGAGTTGATAATGAGTTTTTAAACATGCTTTTAGACAAAGGTGCTGTGAAGACCAAAAATTGCTTTTTTG  1102
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185  ACCCAGAGTTGATAATGAGTTTTTAAACATGCTTTTAGACAAAGGTGCTGTGAAGACCAAAAATTGCTTTTTTG  1258

Query 1103  AAATCATAAAGCCTTTTGACAAGTACATAATGAGACTTCAAGACCGGCTTCTGAAGAGTGTCACACCTTTGCTT  1176
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259  AAATCATAAAGCCTTTTGACAAGTACATAATGAGACTTCAAGACCGGCTTCTGAAGAGTGTCACACCTTTGCTT  1332

Query 1177  ATGGCCTGCAATGCCTACGAGCTAAGTGTCAAGATGAAGACCCTCAGTAACCCCCTGGACTTGGCTCTTGCCCT  1250
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333  ATGGCCTGCAATGCCTACGAGCTAAGTGTCAAGATGAAGACCCTCAGTAACCCCCTGGACTTGGCTCTTGCCCT  1406

Query 1251  AGAAACCACCAACTCTCTCTGCCGGAAGTCTTTGGCCCTTTTGGGACAGACATTTTCCTTGGCCTCTTCTTTCC  1324
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407  AGAAACCACCAACTCTCTCTGCCGGAAGTCTTTGGCCCTTTTGGGACAGACATTTTCCTTGGCCTCTTCTTTCC  1480

Query 1325  GGCAGGAGAAAATCTTAGAAGCTGTCGGCCTGCAAGATATAGCTCCCTCACCTGCTGCGTTTCCAAACTTCGAA  1398
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481  GGCAGGAGAAAATCTTAGAAGCTGTCGGCCTGCAAGATATAGCTCCCTCACCTGCTGCGTTTCCAAACTTCGAA  1554

Query 1399  GACTCCACTTTGTTTGGGCGAGAGTACATAGACCACCTGAAGGCCTGGCTAGTCAGCAGCGGATGTCCCCTCCA  1472
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555  GACTCCACTTTGTTTGGGCGAGAGTACATAGACCACCTGAAGGCCTGGCTAGTCAGCAGCGGATGTCCCCTCCA  1628

Query 1473  GGTTAAGAAAGCCGAACCAGAGCCGATGCGAGAGGAGGAGAAAATGATTCCTCCTACGAAACCTGAAATTCAGG  1546
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1629  GGTTAAGAAAGCCGAACCAGAGCCGATGCGAGAGGAGGAGAAAATGATTCCTCCTACGAAACCTGAAATTCAGG  1702

Query 1547  CCAAGGCTCCAAGTAGTCTGAGTGATGCTGTCCCCCAGCGAGCAGATCACAGGGTAGTGGGCACCATCGACCAG  1620
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1703  CCAAGGCTCCAAGTAGTCTGAGTGATGCTGTCCCCCAGCGAGCAGATCACAGGGTAGTGGGCACCATCGACCAG  1776

Query 1621  CTTGTGAAACGTGTCATCGAAGGCAGCCTGTCTCCCAAAGAGAGAACTCTTCTCAAAGAGGACCCTGCTTACTG  1694
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1777  CTTGTGAAACGTGTCATCGAAGGCAGCCTGTCTCCCAAAGAGAGAACTCTTCTCAAAGAGGACCCTGCTTACTG  1850

Query 1695  GTTTTTGTCTGATGAAAATAGTCTGGAGTATAAATATTACAAGCTGAAGTTGGCAGAAATGCAGCGGATGAGCG  1768
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1851  GTTTTTGTCTGATGAAAATAGTCTGGAGTATAAATATTACAAGCTGAAGTTGGCAGAAATGCAGCGGATGAGCG  1924

Query 1769  AGAACTTGCGAGGAGCCGACCAGAAGCCGACCTCAGCAGACTGTGCAGTGAGGGCCATGCTGTACTCCCGGGCT  1842
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1925  AGAACTTGCGAGGAGCCGACCAGAAGCCGACCTCAGCAGACTGTGCAGTGAGGGCCATGCTGTACTCCCGGGCT  1998

Query 1843  GTCCGCAACCTCAAGAAGAAACTCCTTCCGTGGCAGCGGCGGGGGCTCCTCCGTGCTCAAGGGCTCCGGGGCTG  1916
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1999  GTCCGCAACCTCAAGAAGAAACTCCTTCCGTGGCAGCGGCGGGGGCTCCTCCGTGCTCAAGGGCTCCGGGGCTG  2072

Query 1917  GAAGGCGAGGAGAGCGACCACCGGGACCCAGACCCTCCTATCCTCAGGCACCAGGCTGAAACACCACGGCCGGC  1990
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2073  GAAGGCGAGGAGAGCGACCACCGGGACCCAGACCCTCCTATCCTCAGGCACCAGGCTGAAACACCACGGCCGGC  2146

Query 1991  AGGCTCCAGGCCTCTCACAGGCAAAACCATCCCTGCCAGACAGAAATGATGCTGCCAAGGACTGCCCGCCAGAC  2064
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2147  AGGCTCCAGGCCTCTCACAGGCAAAACCATCCCTGCCAGACAGAAATGATGCTGCCAAGGACTGCCCGCCAGAC  2220

Query 2065  CCAGTTGGACCTTCTCCTCAGGACCCCAGCTTAGAAGCCTCAGGCCCATCCCCCAAGCCAGCAGGAGTGGACAT  2138
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2221  CCAGTTGGACCTTCTCCTCAGGACCCCAGCTTAGAAGCCTCAGGCCCATCCCCCAAGCCAGCAGGAGTGGACAT  2294

Query 2139  CTCTGAAGCACCTCAGACCTCTTCTCCCTGCCCATCTGCTGACATTGACATGAAGACAATGGAGACTGCAGAGA  2212
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2295  CTCTGAAGCACCTCAGACCTCTTCTCCCTGCCCATCTGCTGACATTGACATGAAGACAATGGAGACTGCAGAGA  2368

Query 2213  AACTGGCTAGATTTGTTGCTCAGGTGGGACCAGAGATCGAACAATTCAGCATAGAAAACAGCACCGATAACCCT  2286
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2369  AACTGGCTAGATTTGTTGCTCAGGTGGGACCAGAGATCGAACAATTCAGCATAGAAAACAGCACCGATAACCCT  2442

Query 2287  GACCTGTGGTTTCTACATGACCAAAATAGTTCTGCTTTCAAATTCTATCGAAAGAAAGTGTTTGAACTATGTCC  2360
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2443  GACCTGTGGTTTCTACATGACCAAAATAGTTCTGCTTTCAAATTCTATCGAAAGAAAGTGTTTGAACTATGTCC  2516

Query 2361  ATCAATTTGTTTCACGTCATCTCCGCACAACCTTCACACTGGTGGTGGTGACACCACGGGTTCTCAGGAGAGCC  2434
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2517  ATCAATTTGTTTCACGTCATCTCCGCACAACCTTCACACTGGTGGTGGTGACACCACGGGTTCTCAGGAGAGCC  2590

Query 2435  CCGTGGACCTCATGGAAGGGGAAGCAGAGTTTGAAGACGAGCCCCCTCCGCGGGAGGCTGAGCTGGAGAGCCCA  2508
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2591  CCGTGGACCTCATGGAAGGGGAAGCAGAGTTTGAAGACGAGCCCCCTCCGCGGGAGGCTGAGCTGGAGAGCCCA  2664

Query 2509  G-------------------------------------------------------------------------  2509
            |                                                                         
Sbjct 2665  GAGGTGATGCCTGAGGAGGAGGACGAGGACGATGAGGATGGGGGAGAGGAGGCCCCCGCTCCTGGAGGGGCGGG  2738

Query 2510  --------------------------------------------------------------------------  2509
                                                                                      
Sbjct 2739  CAAGTCTGAGGGCAGCACCCCTGCCGACGGCCTTCCCGGCGAGGCTGCCGAGGACGACCTGGCTGGAGCACCTG  2812

Query 2510  ---------AGGCCTCCTCAGGTACCTGCTTCCCTCGGAAGAGGATCAGCAGCAAGTCATTGAAGGTTGGCATG  2574
                     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2813  CCTTGTCACAGGCCTCCTCAGGTACCTGCTTCCCTCGGAAGAGGATCAGCAGCAAGTCATTGAAGGTTGGCATG  2886

Query 2575  ATTCCAGCTCCCAAGAGAGTGTGTCTCATCCAGGAGCCAAAAGTCCATGAACCAGTTCGAATTGCCTATGACAG  2648
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2887  ATTCCAGCTCCCAAGAGAGTGTGTCTCATCCAGGAGCCAAAAGTCCATGAACCAGTTCGAATTGCCTATGACAG  2960

Query 2649  GCCTCGGGGTCGTCCCATGTCCAAAAAGAAGAAACCCAAGGACTTGGACTTCGCCCAGCAGAAGCTGACCGATA  2722
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2961  GCCTCGGGGTCGTCCCATGTCCAAAAAGAAGAAACCCAAGGACTTGGACTTCGCCCAGCAGAAGCTGACCGATA  3034

Query 2723  AGAACCTGGGCTTCCAGATGCTGCAGAAGATGGGCTGGAAGGAGGGCCATGGCCTGGGCTCCCTCGGAAAGGGC  2796
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3035  AGAACCTGGGCTTCCAGATGCTGCAGAAGATGGGCTGGAAGGAGGGCCATGGCCTGGGCTCCCTCGGAAAGGGC  3108

Query 2797  ATCAGGGAGCCGGTCAGCGTGTACGCAGCAGG--CAGCCTGGGGTGGGAGTGGGTGGGGCCTCAGTCCTTCCAC  2868
            |||||||||||||||||||||         ||  |..|||.||..|||...||||.|||               
Sbjct 3109  ATCAGGGAGCCGGTCAGCGTG---------GGAACCCCCTCGGAAGGGGAAGGGTTGGG---------------  3158

Query 2869  CTGCAGCCTGCCGCTTGGCTCCTTCACAGCCAAGATGGCTTACAGCTGGCAGTTGATTTTTGTTTTTTAAACAG  2942
             ||    |||.||   |||.....||||   ||||.|    |||     ||.|.|||     .|.||...||||
Sbjct 3159  -TG----CTGACG---GGCAGGAGCACA---AAGAAG----ACA-----CATTCGAT-----GTGTTCCGACAG  3207

Query 2943  AAGGCAT-CTTCAGATG-------AGAAGC-----------  2964
            |  |.|| .|.||||||       |.||||           
Sbjct 3208  A--GGATGATGCAGATGTACAGACACAAGCGGGCCAACAAA  3246

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