Nucleotide Global Alignment

Description

• Query: ccsbBroad304_11459
• Subject: NR_147913.2
• Aligned Length: 4302
• Identities: 2925
• Gaps: 1346

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  GTCCCCGCCTCGCGCGGCGGCGGCGGCGGGTGAGGAGCCTGAGGCGGCGGCGGGGGTGGCTCCGCGCGCGGTGG  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  TCTCGGGGGCAAAATAACATGGCAGCCAGACGAATTACACAGGAGACTTTTGATGCTGTATTACAAGAAAAAGC  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  CAAACGATATCACATGGATGCCAGTGGTGAGGCTGTAAGCGAAACTCTTCAGTTTAAAGCTCAAGATCTCTTAA  222

Query    1  --------------------------ATGTATGATGACGTCCACAGCGATGGCAGATACTCCCTCAGTGGATCT  48
                                      ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  223  GGGCAGTCCCAAGATCCAGAGCAGAGATGTATGATGACGTCCACAGCGATGGCAGATACTCCCTCAGTGGATCT  296

Query   49  GTAGCTCACTCTAGAGATGCCGGAAGAGAAGGCCTGAGAAGTGACGTATTTCCAGGGCCTTCCTTCAGATCAAG  122
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  297  GTAGCTCACTCTAGAGATGCCGGAAGAGAAGGCCTGAGAAGTGACGTATTTCCAGGGCCTTCCTTCAGATCAAG  370

Query  123  CAACCCTTCCATCAGTGATGACAGCTACTTTCGCAAAGAATGTGGCCGGGATCTGGAATTTTCTCACTCTGATT  196
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  371  CAACCCTTCCATCAGTGATGACAGCTACTTTCGCAAAGAATGTGGCCGGGATCTGGAATTTTCTCACTCTGATT  444

Query  197  CTCGGGACCAGGTCATTGGCCACCGGAAATTGGGGCATTTCCGTTCTCAGGACTGGAAATTTGCGCTCCGTGGT  270
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  445  CTCGGGACCAGGTCATTGGCCACCGGAAATTGGGGCATTTCCGTTCTCAGGACTGGAAATTTGCGCTCCGTGGT  518

Query  271  TCTTGGGAACAAGACTTTGGCCATCCAGTTTCTCAAGAGTCCTCTTGGTCACAGGAGTATAGTTTTGGTCCCTC  344
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  519  TCTTGGGAACAAGACTTTGGCCATCCAGTTTCTCAAGAGTCCTCTTGGTCACAGGAGTATAGTTTTGGTCCCTC  592

Query  345  TGCAGTTTTGGGGGACTTTGGATCTTCCAGGCTGATTGAGAAAGAGTGTTTGGAGAAGGAGAGTCGGGATTATG  418
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  593  TGCAGTTTTGGGGGACTTTGGATCTTCCAGGCTGATTGAGAAAGAGTGTTTGGAGAAGGAGAGTCGGGATTATG  666

Query  419  ACGTGGACCATCCTGGGGAGGCTGACTCTGTGCTTAGGGGCAGCAGTCAAGTCCAGGCCAGAGGTCGAGCTCTA  492
            |||||||||||||||||||||||||||||||||||||||||.||||||||||||||||||||||||||||||||
Sbjct  667  ACGTGGACCATCCTGGGGAGGCTGACTCTGTGCTTAGGGGCGGCAGTCAAGTCCAGGCCAGAGGTCGAGCTCTA  740

Query  493  AACATCGTTGACCAGGAAGGTTCCCTCCTAGGAAAGGGGGAGACTCAGGGCCTGCTCACAGCTAAGGGGGGTGT  566
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  741  AACATCGTTGACCAGGAAGGTTCCCTCCTAGGAAAGGGGGAGACTCAGGGCCTGCTCACAGCTAAGGGGGGTGT  814

Query  567  TGGGAAACTTGTCACATTGAGAAATGTGAGCACAAAAAAAATACCCACCGTGAATCGTATTACTCCCAAAACTC  640
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  815  TGGGAAACTTGTCACATTGAGAAATGTGAGCACAAAAAAAATACCCACCGTGAATCGTATTACTCCCAAAACTC  888

Query  641  AGGGCACTAACCAAATCCAGAAAAACACTCCAAGTCCTGATGTGACCCTGGGGACAAACCCAGGGACAGAAGAT  714
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  889  AGGGCACTAACCAAATCCAGAAAAACACTCCAAGTCCTGATGTGACCCTGGGGACAAACCCAGGGACAGAAGAT  962

Query  715  ATCCAGTTCCCCATTCAGAAGATCCCTCTGGGGCTGGATCTGAAGAATCTTCGGCTCCCCAGAAGAAAGATGAG  788
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  963  ATCCAGTTCCCCATTCAGAAGATCCCTCTGGGGCTGGATCTGAAGAATCTTCGGCTCCCCAGAAGAAAGATGAG  1036

Query  789  CTTTGACATCATAGATAAGTCTGATGTTTTTTCAAGATTTGGGATAGAAATAATCAAATGGGCAGGATTCCACA  862
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037  CTTTGACATCATAGATAAGTCTGATGTTTTTTCAAGATTTGGGATAGAAATAATCAAATGGGCAGGATTCCACA  1110

Query  863  CCATAAAAGATGATATTAAATTTTCCCAACTTTTCCAGACTCTCTTTGAACTTGAAACAGAAACCTGTGCTAAA  936
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111  CCATAAAAGATGATATTAAATTTTCCCAACTTTTCCAGACTCTCTTTGAACTTGAAACAGAAACCTGTGCTAAA  1184

Query  937  ATGCTTGCCTCATTCAAATGTTCCTTAAAACCAGAGCACAGAGATTTTTGCTTTTTTACTATCAAATTTTTAAA  1010
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185  ATGCTTGCCTCATTCAAATGTTCCTTAAAACCAGAGCACAGAGATTTTTGCTTTTTTACTATCAAATTTTTAAA  1258

Query 1011  GCACTCTGCTTTGAAAACACCCAGAGTTGATAATGAGTTTTTAAACATGCTTTTAGACAAAGGTGCTGTGAAGA  1084
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259  GCACTCTGCTTTGAAAACACCCAGAGTTGATAATGAGTTTTTAAACATGCTTTTAGACAAAGGTGCTGTGAAGA  1332

Query 1085  CCAAAAATTGCTTTTTTGAAATCATAAAGCCTTTTGACAAGTACATAATGAGACTTCAAGACCGGCTTCTGAAG  1158
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333  CCAAAAATTGCTTTTTTGAAATCATAAAGCCTTTTGACAAGTACATAATGAGACTTCAAGACCGGCTTCTGAAG  1406

Query 1159  AGTGTCACACCTTTGCTTATGGCCTGCAATGCCTACGAGCTAAGTGTCAAGATGAAGACCCTCAGTAACCCCCT  1232
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407  AGTGTCACACCTTTGCTTATGGCCTGCAATGCCTACGAGCTAAGTGTCAAGATGAAGACCCTCAGTAACCCCCT  1480

Query 1233  GGACTTGGCTCTTGCCCTAGAAACCACCAACTCTCTCTGCCGGAAGTCTTTGGCCCTTTTGGGACAGACATTTT  1306
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481  GGACTTGGCTCTTGCCCTAGAAACCACCAACTCTCTCTGCCGGAAGTCTTTGGCCCTTTTGGGACAGACATTTT  1554

Query 1307  CCTTGGCCTCTTCTTTCCGGCAGGAGAAAATCTTAGAAGCTGTCGGCCTGCAAGATATAGCTCCCTCACCTGCT  1380
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555  CCTTGGCCTCTTCTTTCCGGCAGGAGAAAATCTTAGAAGCTGTCGGCCTGCAAGATATAGCTCCCTCACCTGCT  1628

Query 1381  GCGTTTCCAAACTTCGAAGACTCCACTTTGTTTGGGCGAGAGTACATAGACCACCTGAAGGCCTGGCTAGTCAG  1454
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1629  GCGTTTCCAAACTTCGAAGACTCCACTTTGTTTGGGCGAGAGTACATAGACCACCTGAAGGCCTGGCTAGTCAG  1702

Query 1455  CAGCGGATGTCCCCTCCAGGTTAAGAAAGCCGAACCAGAGCCGATGCGAGAGGAGGAGAAAATGATTCCTCCTA  1528
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1703  CAGCGGATGTCCCCTCCAGGTTAAGAAAGCCGAACCAGAGCCGATGCGAGAGGAGGAGAAAATGATTCCTCCTA  1776

Query 1529  CGAAACCTGAAATTCAGGCCAAGGCTCCAAGTAGTCTGAGTGATGCTGTCCCCCAGCGAGCAGATCACAGGGTA  1602
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1777  CGAAACCTGAAATTCAGGCCAAGGCTCCAAGTAGTCTGAGTGATGCTGTCCCCCAGCGAGCAGATCACAGGGTA  1850

Query 1603  GTGGGCACCATCGACCAGCTTGTGAAACGTGTCATCGAAGGCAGCCTGTCTCCCAAAGAGAGAACTCTTCTCAA  1676
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1851  GTGGGCACCATCGACCAGCTTGTGAAACGTGTCATCGAAGGCAGCCTGTCTCCCAAAGAGAGAACTCTTCTCAA  1924

Query 1677  AGAGGACCCTGCTTACTGGTTTTTGTCTGATGAAAATAGTCTGGAGTATAAATATTACAAGCTGAAGTTGGCAG  1750
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1925  AGAGGACCCTGCTTACTGGTTTTTGTCTGATGAAAATAGTCTGGAGTATAAATATTACAAGCTGAAGTTGGCAG  1998

Query 1751  AAATGCAGCGGATGAGCGAGAACTTGCGAGGAGCCGACCAGAAGCCGACCTCAGCAGACTGTGCAGTGAGGGCC  1824
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1999  AAATGCAGCGGATGAGCGAGAACTTGCGAGGAGCCGACCAGAAGCCGACCTCAGCAGACTGTGCAGTGAGGGCC  2072

Query 1825  ATGCTGTACTCCCGGGCTGTCCGCAACCTCAAGAAGAAACTCCTTCCGTGGCAGCGGCGGGGGCTCCTCCGTGC  1898
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2073  ATGCTGTACTCCCGGGCTGTCCGCAACCTCAAGAAGAAACTCCTTCCGTGGCAGCGGCGGGGGCTCCTCCGTGC  2146

Query 1899  TCAAGGGCTCCGGGGCTGGAAGGCGAGGAGAGCGACCACCGGGACCCAGACCCTCCTATCCTCAGGCACCAGGC  1972
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2147  TCAAGGGCTCCGGGGCTGGAAGGCGAGGAGAGCGACCACCGGGACCCAGACCCTCCTATCCTCAGGCACCAGGC  2220

Query 1973  TGAAACACCACGGCCGGCAGGCTCCAGGCCTCTCACAGGCAAAACCATCCCTGCCAGACAGAAATGATGCTGCC  2046
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2221  TGAAACACCACGGCCGGCAGGCTCCAGGCCTCTCACAGGCAAAACCATCCCTGCCAGACAGAAATGATGCTGCC  2294

Query 2047  AAGGACTGCCCGCCAGACCCAGTTGGACCTTCTCCTCAGGACCCCAGCTTAGAAGCCTCAGGCCCATCCCCCAA  2120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2295  AAGGACTGCCCGCCAGACCCAGTTGGACCTTCTCCTCAGGACCCCAGCTTAGAAGCCTCAGGCCCATCCCCCAA  2368

Query 2121  GCCAGCAGGAGTGGACATCTCTGAAGCACCTCAGACCTCTTCTCCCTGCCCATCTGCTGACATTGACATGAAGA  2194
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2369  GCCAGCAGGAGTGGACATCTCTGAAGCACCTCAGACCTCTTCTCCCTGCCCATCTGCTGACATTGACATGAAGA  2442

Query 2195  CAATGGAGACTGCAGAGAAACTGGCTAGATTTGTTGCTCAGGTGGGACCAGAGATCGAACAATTCAGCATAGAA  2268
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2443  CAATGGAGACTGCAGAGAAACTGGCTAGATTTGTTGCTCAGGTGGGACCAGAGATCGAACAATTCAGCATAGAA  2516

Query 2269  AACAGCACCGATAACCCTGACCTGTGGTTTCTACATGACCAAAATAGTTCTGCTTTCAAATTCTATCGAAAGAA  2342
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2517  AACAGCACCGATAACCCTGACCTGTGGTTTCTACATGACCAAAATAGTTCTGCTTTCAAATTCTATCGAAAGAA  2590

Query 2343  AGTGTTTGAACTATGTCCATCAATTTGTTTCACGTCATCTCCGCACAACCTTCACACTGGTGGTGGTGACACCA  2416
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2591  AGTGTTTGAACTATGTCCATCAATTTGTTTCACGTCATCTCCGCACAACCTTCACACTGGTGGTGGTGACACCA  2664

Query 2417  CGGGTTCTCAGGAGAGCCCCGTGGACCTCATGGAAGGGGAAGCAGAGTTTGAAGACGAGCCCCCTCCGCGGGAG  2490
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2665  CGGGTTCTCAGGAGAGCCCCGTGGACCTCATGGAAGGGGAAGCAGAGTTTGAAGACGAGCCCCCTCCGCGGGAG  2738

Query 2491  GCTGAGCTGGAGAGCCCAG-------------------------------------------------------  2509
            |||||||||||||||||||                                                       
Sbjct 2739  GCTGAGCTGGAGAGCCCAGAGGTGATGCCTGAGGAGGAGGACGAGGACGATGAGGATGGGGGAGAGGAGGCCCC  2812

Query 2510  --------------------------------------------------------------------------  2509
                                                                                      
Sbjct 2813  CGCTCCTGGAGGGGCGGGCAAGTCTGAGGGCAGCACCCCTGCCGACGGCCTTCCCGGCGAGGCTGCCGAGGACG  2886

Query 2510  ---------------------------AGGCCTCCTCAGGTACCTGCTTCCCTCGGAAGAGGATCAGCAGCAAG  2556
                                       |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2887  ACCTGGCTGGAGCACCTGCCTTGTCACAGGCCTCCTCAGGTACCTGCTTCCCTCGGAAGAGGATCAGCAGCAAG  2960

Query 2557  TCATTGAAGGTTGGCATGATTCCAGCTCCCAAGAGAGTGTGTCTCATCCAGGAGCCAAAAGTCCATGAACCAGT  2630
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2961  TCATTGAAGGTTGGCATGATTCCAGCTCCCAAGAGAGTGTGTCTCATCCAGGAGCCAAAAGTCCATGAACCAGT  3034

Query 2631  TCGAATTGCCTATGACAGGCCTCGGGGTCGTCCCATGTCCAAAAAGAAGAAACCCAAGGACTTGGACTTCGCCC  2704
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3035  TCGAATTGCCTATGACAGGCCTCGGGGTCGTCCCATGTCCAAAAAGAAGAAACCCAAGGACTTGGACTTCGCCC  3108

Query 2705  AGCAGAAGCTGACCGATAAGAACCTGGGCTTCCAGATGCTGCAGAAGATGGGCTGGAAGGAGGGCCATGGCCTG  2778
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3109  AGCAGAAGCTGACCGATAAGAACCTGGGCTTCCAGATGCTGCAGAAGATGGGCTGGAAGGAGGGCCATGGCCTG  3182

Query 2779  GGCTCCCTCGGAAAGGGCATCAGGGAGCCGGTCAGCG-------------------------------------  2815
            |||||||||||||||||||||||||||||||||||||                                     
Sbjct 3183  GGCTCCCTCGGAAAGGGCATCAGGGAGCCGGTCAGCGTGGGAACCCCCTCGGAAGGGGAAGGGTTGGGTGCTGA  3256

Query 2816  --------------------------------------------------------TGTAC-------------  2820
                                                                    |||||             
Sbjct 3257  CGGGCAGGAGCACAAAGAAGACACATTCGATGTGTTCCGACAGAGGATGATGCAGATGTACAGACACAAGCGGG  3330

Query 2821  ---------------------------------------------GCAGCA-----------------------  2826
                                                         ||||||                       
Sbjct 3331  CCAACAAATAGATCAAAACCACTGATGTGAAAGATAAGCCTTGAAGCAGCAATTGCCCTTAAAACATCATCCCT  3404

Query 2827  -----GG--CAGCCTGG-----------------GGT--------------------------GGGAGTGGGTG  2850
                 ||  |.||||||                 |||                          |.||.|||.||
Sbjct 3405  GCCCTGGATCGGCCTGGAGCCAGTGCCCAAGTACGGTTTGCTTCCATGTTGGCCATGGGTCAGGTGAATGGATG  3478

Query 2851  -----------GGGCCTCAGTCCTTCCACCTGCAG-------------CCTGCCGCTTGG--------------  2886
                       |||.|||||.||.|..|||.| ||             |||||.||.|||              
Sbjct 3479  GAGCTCCAAGCGGGGCTCAGCCCATTGACCCG-AGCGAGGCGCACACACCTGCAGCGTGGATCAAGCGCACTCT  3551

Query 2887  CTCCTTCACAGCCAAG--------ATG-GCTTACAGCTGGCA-GTTGATTTTTG----------------TTTT  2934
            ||||..||..|||..|        ||| ||||....||.||| |||.|||.|||                |||.
Sbjct 3552  CTCCAGCATCGCCCTGACCATTCCATGTGCTTTGTCCTAGCATGTTCATTCTTGACTTTCTCCACTTCATTTTA  3625

Query 2935  TTAAACAG---AAGGCATCTTCAGATGAGAAGC-----------------------------------------  2964
            |||||.||   ||.|   |||.||    |||.|                                         
Sbjct 3626  TTAAAAAGTTAAATG---CTTTAG----GAATCTGTGGCGTGTGGCCACTGACCGCCCCCCACCTCCTGCCGCT  3692

Query 2965  --------------------------------------------------------------------------  2964
                                                                                      
Sbjct 3693  CCTCCAAGTTTGAGCTGAGATGGTTCTGTGAGTCCTTGGCAGGGGTCAAAGGGCACATCTCCTTGAACCTAGAA  3766

Query 2965  --------------------------------------------------------------------------  2964
                                                                                      
Sbjct 3767  AGCCCCCTACACTCTCAGAGGACACCTCTCCTGTGGATTCAGCGCTGGGGCAGTGAAGGTGTCGGGAGCCAGCA  3840

Query 2965  --------------------------------------------------------------------------  2964
                                                                                      
Sbjct 3841  GAGCATGGTGCGTGCTGCCAGCTGCCGGCCAGCCGGGATAGAGGAGATGCCACTGGCCCTCCGTGCCCCCAGCC  3914

Query 2965  --------------------------------------------------------------------------  2964
                                                                                      
Sbjct 3915  CCTCCCTCTTAACCGAGGCTGTCCTTGCTCTCTGCAGAGGCCGCTCTGCAGGATCCTCGTGTCGCGCGTGATGT  3988

Query 2965  --------------------------------------------------------------------------  2964
                                                                                      
Sbjct 3989  GTGGTGGCACAGCCGTGTCAAAGTCACAGTGTCTTTTCTGTCGTTCTAGTTCCAGGGTCACCCCCGAGAGGACA  4062

Query 2965  --------------------------------------------------------------------------  2964
                                                                                      
Sbjct 4063  ACAGGCATCTGGAAGTGCTCTCTCGCCACTCTGGGTGCTTTACTGTCTCTGGCTTGTTTCCATCACTGGAAATC  4136

Query 2965  --------------------------------------------------------------------------  2964
                                                                                      
Sbjct 4137  ACTTAGAGAATTGTAGTGTTTTTGGTCCTTGATAAAGCCTAGAAGACATTTGTGATGTTACAAAATGGAAGTTT  4210

Query 2965  --------------------------------------------------------------------------  2964
                                                                                      
Sbjct 4211  TCTTTTGTTTCTGTTTTTTAAGATCTAAGAAGTTGTGAATGTTGTTAATCATTTAGCCGTTGCAATAAATGTAG  4284

Query 2965  ----------  2964
                      
Sbjct 4285  AGGAAATGCA  4294