Nucleotide Global Alignment

Description

• Query: ccsbBroad304_11459
• Subject: XR_002958237.1
• Aligned Length: 4180
• Identities: 2963
• Gaps: 1216

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  GTTCATTTGCATGTCCCCGCCTCGCGCGGCGGCGGCGGCGGGTGAGGAGCCTGAGGCGGCGGCGGGGGTGGCTC  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  CGCGCGCGGTGGTCTCGGGGGCAAAATAACATGGCAGCCAGACGAATTACACAGGAGACTTTTGATGCTGTATT  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  ACAAGAAAAAGCCAAACGATATCACATGGATGCCAGTGGTGAGGCTGTAAGCGAAACTCTTCAGTTTAAAGCTC  222

Query    1  --------------------------------------ATGTATGATGACGTCCACAGCGATGGCAGATACTCC  36
                                                  ||||||||||||||||||||||||||||||||||||
Sbjct  223  AAGATCTCTTAAGGGCAGTCCCAAGATCCAGAGCAGAGATGTATGATGACGTCCACAGCGATGGCAGATACTCC  296

Query   37  CTCAGTGGATCTGTAGCTCACTCTAGAGATGCCGGAAGAGAAGGCCTGAGAAGTGACGTATTTCCAGGGCCTTC  110
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  297  CTCAGTGGATCTGTAGCTCACTCTAGAGATGCCGGAAGAGAAGGCCTGAGAAGTGACGTATTTCCAGGGCCTTC  370

Query  111  CTTCAGATCAAGCAACCCTTCCATCAGTGATGACAGCTACTTTCGCAAAGAATGTGGCCGGGATCTGGAATTTT  184
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  371  CTTCAGATCAAGCAACCCTTCCATCAGTGATGACAGCTACTTTCGCAAAGAATGTGGCCGGGATCTGGAATTTT  444

Query  185  CTCACTCTGATTCTCGGGACCAGGTCATTGGCCACCGGAAATTGGGGCATTTCCGTTCTCAGGACTGGAAATTT  258
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  445  CTCACTCTGATTCTCGGGACCAGGTCATTGGCCACCGGAAATTGGGGCATTTCCGTTCTCAGGACTGGAAATTT  518

Query  259  GCGCTCCGTGGTTCTTGGGAACAAGACTTTGGCCATCCAGTTTCTCAAGAGTCCTCTTGGTCACAGGAGTATAG  332
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  519  GCGCTCCGTGGTTCTTGGGAACAAGACTTTGGCCATCCAGTTTCTCAAGAGTCCTCTTGGTCACAGGAGTATAG  592

Query  333  TTTTGGTCCCTCTGCAGTTTTGGGGGACTTTGGATCTTCCAGGCTGATTGAGAAAGAGTGTTTGGAGAAGGAGA  406
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  593  TTTTGGTCCCTCTGCAGTTTTGGGGGACTTTGGATCTTCCAGGCTGATTGAGAAAGAGTGTTTGGAGAAGGAGA  666

Query  407  GTCGGGATTATGACGTGGACCATCCTGGGGAGGCTGACTCTGTGCTTAGGGGCAGCAGTCAAGTCCAGGCCAGA  480
            |||||||||||||||||||||||||||||||||||||||||||||||||||||.||||||||||||||||||||
Sbjct  667  GTCGGGATTATGACGTGGACCATCCTGGGGAGGCTGACTCTGTGCTTAGGGGCGGCAGTCAAGTCCAGGCCAGA  740

Query  481  GGTCGAGCTCTAAACATCGTTGACCAGGAAGGTTCCCTCCTAGGAAAGGGGGAGACTCAGGGCCTGCTCACAGC  554
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  741  GGTCGAGCTCTAAACATCGTTGACCAGGAAGGTTCCCTCCTAGGAAAGGGGGAGACTCAGGGCCTGCTCACAGC  814

Query  555  TAAGGGGGGTGTTGGGAAACTTGTCACATTGAGAAATGTGAGCACAAAAAAAATACCCACCGTGAATCGTATTA  628
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  815  TAAGGGGGGTGTTGGGAAACTTGTCACATTGAGAAATGTGAGCACAAAAAAAATACCCACCGTGAATCGTATTA  888

Query  629  CTCCCAAAACTCAGGGCACTAACCAAATCCAGAAAAACACTCCAAGTCCTGATGTGACCCTGGGGACAAACCCA  702
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  889  CTCCCAAAACTCAGGGCACTAACCAAATCCAGAAAAACACTCCAAGTCCTGATGTGACCCTGGGGACAAACCCA  962

Query  703  GGGACAGAAGATATCCAGTTCCCCATTCAGAAGATCCCTCTGGGGCTGGATCTGAAGAATCTTCGGCTCCCCAG  776
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  963  GGGACAGAAGATATCCAGTTCCCCATTCAGAAGATCCCTCTGGGGCTGGATCTGAAGAATCTTCGGCTCCCCAG  1036

Query  777  AAGAAAGATGAGCTTTGACATCATAGATAAGTCTGATGTTTTTTCAAGATTTGGGATAGAAATAATCAAATGGG  850
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037  AAGAAAGATGAGCTTTGACATCATAGATAAGTCTGATGTTTTTTCAAGATTTGGGATAGAAATAATCAAATGGG  1110

Query  851  CAGGATTCCACACCATAAAAGATGATATTAAATTTTCCCAACTTTTCCAGACTCTCTTTGAACTTGAAACAGAA  924
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111  CAGGATTCCACACCATAAAAGATGATATTAAATTTTCCCAACTTTTCCAGACTCTCTTTGAACTTGAAACAGAA  1184

Query  925  ACCTGTGCTAAAATGCTTGCCTCATTCAAATGTTCCTTAAAACCAGAGCACAGAGATTTTTGCTTTTTTACTAT  998
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185  ACCTGTGCTAAAATGCTTGCCTCATTCAAATGTTCCTTAAAACCAGAGCACAGAGATTTTTGCTTTTTTACTAT  1258

Query  999  CAAATTTTTAAAGCACTCTGCTTTGAAAACACCCAGAGTTGATAATGAGTTTTTAAACATGCTTTTAGACAAAG  1072
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259  CAAATTTTTAAAGCACTCTGCTTTGAAAACACCCAGAGTTGATAATGAGTTTTTAAACATGCTTTTAGACAAAG  1332

Query 1073  GTGCTGTGAAGACCAAAAATTGCTTTTTTGAAATCATAAAGCCTTTTGACAAGTACATAATGAGACTTCAAGAC  1146
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333  GTGCTGTGAAGACCAAAAATTGCTTTTTTGAAATCATAAAGCCTTTTGACAAGTACATAATGAGACTTCAAGAC  1406

Query 1147  CGGCTTCTGAAGAGTGTCACACCTTTGCTTATGGCCTGCAATGCCTACGAGCTAAGTGTCAAGATGAAGACCCT  1220
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407  CGGCTTCTGAAGAGTGTCACACCTTTGCTTATGGCCTGCAATGCCTACGAGCTAAGTGTCAAGATGAAGACCCT  1480

Query 1221  CAGTAACCCCCTGGACTTGGCTCTTGCCCTAGAAACCACCAACTCTCTCTGCCGGAAGTCTTTGGCCCTTTTGG  1294
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481  CAGTAACCCCCTGGACTTGGCTCTTGCCCTAGAAACCACCAACTCTCTCTGCCGGAAGTCTTTGGCCCTTTTGG  1554

Query 1295  GACAGACATTTTCCTTGGCCTCTTCTTTCCGGCAGGAGAAAATCTTAGAAGCTGTCGGCCTGCAAGATATAGCT  1368
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555  GACAGACATTTTCCTTGGCCTCTTCTTTCCGGCAGGAGAAAATCTTAGAAGCTGTCGGCCTGCAAGATATAGCT  1628

Query 1369  CCCTCACCTGCTGCGTTTCCAAACTTCGAAGACTCCACTTTGTTTGGGCGAGAGTACATAGACCACCTGAAGGC  1442
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1629  CCCTCACCTGCTGCGTTTCCAAACTTCGAAGACTCCACTTTGTTTGGGCGAGAGTACATAGACCACCTGAAGGC  1702

Query 1443  CTGGCTAGTCAGCAGCGGATGTCCCCTCCAGGTTAAGAAAGCCGAACCAGAGCCGATGCGAGAGGAGGAGAAAA  1516
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1703  CTGGCTAGTCAGCAGCGGATGTCCCCTCCAGGTTAAGAAAGCCGAACCAGAGCCGATGCGAGAGGAGGAGAAAA  1776

Query 1517  TGATTCCTCCTACGAAACCTGAAATTCAGGCCAAGGCTCCAAGTAGTCTGAGTGATGCTGTCCCCCAGCGAGCA  1590
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1777  TGATTCCTCCTACGAAACCTGAAATTCAGGCCAAGGCTCCAAGTAGTCTGAGTGATGCTGTCCCCCAGCGAGCA  1850

Query 1591  GATCACAGGGTAGTGGGCACCATCGACCAGCTTGTGAAACGTGTCATCGAAGGCAGCCTGTCTCCCAAAGAGAG  1664
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1851  GATCACAGGGTAGTGGGCACCATCGACCAGCTTGTGAAACGTGTCATCGAAGGCAGCCTGTCTCCCAAAGAGAG  1924

Query 1665  AACTCTTCTCAAAGAGGACCCTGCTTACTGGTTTTTGTCTGATGAAAATAGTCTGGAGTATAAATATTACAAGC  1738
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1925  AACTCTTCTCAAAGAGGACCCTGCTTACTGGTTTTTGTCTGATGAAAATAGTCTGGAGTATAAATATTACAAGC  1998

Query 1739  TGAAGTTGGCAGAAATGCAGCGGATGAGCGAGAACTTGCGAGGAGCCGACCAGAAGCCGACCTCAGCAGACTGT  1812
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1999  TGAAGTTGGCAGAAATGCAGCGGATGAGCGAGAACTTGCGAGGAGCCGACCAGAAGCCGACCTCAGCAGACTGT  2072

Query 1813  GCAGTGAGGGCCATGCTGTACTCCCGGGCTGTCCGCAACCTCAAGAAGAAACTCCTTCCGTGGCAGCGGCGGGG  1886
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2073  GCAGTGAGGGCCATGCTGTACTCCCGGGCTGTCCGCAACCTCAAGAAGAAACTCCTTCCGTGGCAGCGGCGGGG  2146

Query 1887  GCTCCTCCGTGCTCAAGGGCTCCGGGGCTGGAAGGCGAGGAGAGCGACCACCGGGACCCAGACCCTCCTATCCT  1960
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2147  GCTCCTCCGTGCTCAAGGGCTCCGGGGCTGGAAGGCGAGGAGAGCGACCACCGGGACCCAGACCCTCCTATCCT  2220

Query 1961  CAGGCACCAGGCTGAAACACCACGGCCGGCAGGCTCCAGGCCTCTCACAGGCAAAACCATCCCTGCCAGACAGA  2034
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2221  CAGGCACCAGGCTGAAACACCACGGCCGGCAGGCTCCAGGCCTCTCACAGGCAAAACCATCCCTGCCAGACAGA  2294

Query 2035  AATGATGCTGCCAAGGACTGCCCGCCAGACCCAGTTGGACCTTCTCCTCAGGACCCCAGCTTAGAAGCCTCAGG  2108
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2295  AATGATGCTGCCAAGGACTGCCCGCCAGACCCAGTTGGACCTTCTCCTCAGGACCCCAGCTTAGAAGCCTCAGG  2368

Query 2109  CCCATCCCCCAAGCCAGCAGGAGTGGACATCTCTGAAGCACCTCAGACCTCTTCTCCCTGCCCATCTGCTGACA  2182
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2369  CCCATCCCCCAAGCCAGCAGGAGTGGACATCTCTGAAGCACCTCAGACCTCTTCTCCCTGCCCATCTGCTGACA  2442

Query 2183  TTGACATGAAGACAATGGAGACTGCAGAGAAACTGGCTAGATTTGTTGCTCAGGTGGGACCAGAGATCGAACAA  2256
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2443  TTGACATGAAGACAATGGAGACTGCAGAGAAACTGGCTAGATTTGTTGCTCAGGTGGGACCAGAGATCGAACAA  2516

Query 2257  TTCAGCATAGAAAACAGCACCGATAACCCTGACCTGTGGTTTCTACATGACCAAAATAGTTCTGCTTTCAAATT  2330
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2517  TTCAGCATAGAAAACAGCACCGATAACCCTGACCTGTGGTTTCTACATGACCAAAATAGTTCTGCTTTCAAATT  2590

Query 2331  CTATCGAAAGAAAGTGTTTGAACTATGTCCATCAATTTGTTTCACGTCATCTCCGCACAACCTTCACACTGGTG  2404
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2591  CTATCGAAAGAAAGTGTTTGAACTATGTCCATCAATTTGTTTCACGTCATCTCCGCACAACCTTCACACTGGTG  2664

Query 2405  GTGGTGACACCACGGGTTCTCAGGAGAGCCCCGTGGACCTCATGGAAGGGGAAGCAGAGTTTGAAGACGAGCCC  2478
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2665  GTGGTGACACCACGGGTTCTCAGGAGAGCCCCGTGGACCTCATGGAAGGGGAAGCAGAGTTTGAAGACGAGCCC  2738

Query 2479  CCTCCGCGGGAGGCTGAGCTGGAGAGCCCAG-------------------------------------------  2509
            |||||||||||||||||||||||||||||||                                           
Sbjct 2739  CCTCCGCGGGAGGCTGAGCTGGAGAGCCCAGAGGTGATGCCTGAGGAGGAGGACGAGGACGATGAGGATGGGGG  2812

Query 2510  --------------------------------------------------------------------------  2509
                                                                                      
Sbjct 2813  AGAGGAGGCCCCCGCTCCTGGAGGGGCGGGCAAGTCTGAGGGCAGCACCCCTGCCGACGGCCTTCCCGGCGAGG  2886

Query 2510  ---------------------------------------AGGCCTCCTCAGGTACCTGCTTCCCTCGGAAGAGG  2544
                                                   |||||||||||||||||||||||||||||||||||
Sbjct 2887  CTGCCGAGGACGACCTGGCTGGAGCACCTGCCTTGTCACAGGCCTCCTCAGGTACCTGCTTCCCTCGGAAGAGG  2960

Query 2545  ATCAGCAGCAAGTCATTGAAGGTTGGCATGATTCCAGCTCCCAAGAGAGTGTGTCTCATCCAGGAGCCAAAAGT  2618
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2961  ATCAGCAGCAAGTCATTGAAGGTTGGCATGATTCCAGCTCCCAAGAGAGTGTGTCTCATCCAGGAGCCAAAAGT  3034

Query 2619  CCATGAACCAGTTCGAATTGCCTATGACAGGCCTCGGGGTCGTCCCATGTCCAAAAAGAAGAAACCCAAGGACT  2692
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3035  CCATGAACCAGTTCGAATTGCCTATGACAGGCCTCGGGGTCGTCCCATGTCCAAAAAGAAGAAACCCAAGGACT  3108

Query 2693  TGGACTTCGCCCAGCAGAAGCTGACCGATAAGAACCTGGGCTTCCAGATGCTGCAGAAGATGGGCTGGAAGGAG  2766
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3109  TGGACTTCGCCCAGCAGAAGCTGACCGATAAGAACCTGGGCTTCCAGATGCTGCAGAAGATGGGCTGGAAGGAG  3182

Query 2767  GGCCATGGCCTGGGCTCCCTCGGAAAGGGCATCAGGGAGCCGGTCAGCGTGTACGCAGCAGGCAGCCTGGGGTG  2840
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3183  GGCCATGGCCTGGGCTCCCTCGGAAAGGGCATCAGGGAGCCGGTCAGCGTGTACGCAGCAGGCAGCCTGGGGTG  3256

Query 2841  GGAGTGGGTGGGGCCTCAGTCCTTCCACCTGCAGCCTGCCGCTTGGCTCCTTCACAGCCAAGATGGCTTACAGC  2914
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3257  GGAGTGGGTGGGGCCTCAGTCCTTCCACCTGCAGCCTGCCGCTTGGCTCCTTCACAGCCAAGATGGCTTACAGC  3330

Query 2915  TGGCAGTTGATTTTTGTTTTTTAAACAGAAGGCATCTTCAGATGAGAAGC------------------------  2964
            ||||||||||||||||||||||||||||||||||||||||||||||||||                        
Sbjct 3331  TGGCAGTTGATTTTTGTTTTTTAAACAGAAGGCATCTTCAGATGAGAAGCTGATCATTTACATGTGCAGGTGTT  3404

Query 2965  --------------------------------------------------------------------------  2964
                                                                                      
Sbjct 3405  TACAGGGCTCCTTTCTGTCCTGGTGTAGATTTTTTAACCAGCTTGTTGGCCCTGGTCATTTTGGCCACATTTGT  3478

Query 2965  --------------------------------------------------------------------------  2964
                                                                                      
Sbjct 3479  GACCATCATAAAAGCTAAGTGGTATTTCTGTGTAGTTTCCGTCTGGAACTGCTTTCCCATTCCCGGGAACCCAT  3552

Query 2965  --------------------------------------------------------------------------  2964
                                                                                      
Sbjct 3553  AGCCGGGCCAGCCAGGGTCCCGAACACAGGCCCAAAGTTTATTAAACCCCGATCATAACCTCCAGCAGGCATTT  3626

Query 2965  --------------------------------------------------------------------------  2964
                                                                                      
Sbjct 3627  CATTTAATACTGAGCTTAGTTCCTGCTGGGTAAGGCATTCCGAGGTAACCAGGGCCCTCTGGGCACCCCCTCAA  3700

Query 2965  --------------------------------------------------------------------------  2964
                                                                                      
Sbjct 3701  AAGCCAGCTCTTCGAGGGTGAGTACTCCTTGTTTCTACTGTGAGTCGCGTCTTGATTTTCCCTTTCTTTGATGT  3774

Query 2965  --------------------------------------------------------------------------  2964
                                                                                      
Sbjct 3775  CTCAGTGTGTGTCCCAAACACCTGCATCTCATGGACTGTTTGTGCCCATGCCCAGTTCCTGGCATGCCAGGCCC  3848

Query 2965  --------------------------------------------------------------------------  2964
                                                                                      
Sbjct 3849  TGGGCTCAGGTGCACAACTGACTCTCTTTTTCACTCCCTAGGGGAACCCCCTCGGAAGGGGAAGGGTTGGGTGC  3922

Query 2965  --------------------------------------------------------------------------  2964
                                                                                      
Sbjct 3923  TGACGGGCAGGAGCACAAAGAAGACACATTCGATGTGTTCCGACAGAGGATGATGCAGATGTACAGACACAAGC  3996

Query 2965  --------------------------------------------------------------------------  2964
                                                                                      
Sbjct 3997  GGGCCAACAAATAGTTCCAGGGTCACCCCCGAGAGGACAACAGGCATCTGGAAGTGCTCTCTCGCCACTCTGGG  4070

Query 2965  --------------------------------------------------------------------------  2964
                                                                                      
Sbjct 4071  TGCTTTACTGTCTCTGGCTTGTTTCCATCACTGGAAATCACTTAGAGAATTGTAGTGTTTTTGGTCCTTGATAA  4144

Query 2965  ------------------------------------  2964
                                                
Sbjct 4145  AGCCTAGAAGACATTTGTGATGTTACAAAATGGAAG  4180