Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_11459
- Subject:
- XR_002958238.1
- Aligned Length:
- 4292
- Identities:
- 2963
- Gaps:
- 1328
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 TTCATTTGCATGTCCCCGCCTCGCGCGGCGGCGGCGGCGGGTGAGGAGCCTGAGGCGGCGGCGGGGGTGGCTCC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GCGCGCGGTGGTCTCGGGGGCAAAATAACATGGCAGCCAGACGAATTACACAGGAGACTTTTGATGCTGTATTA 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 CAAGAAAAAGCCAAACGATATCACATGGATGCCAGTGGTGAGGCTGTAAGCGAAACTCTTCAGTTTAAAGCTCA 222
Query 1 -------------------------------------ATGTATGATGACGTCCACAGCGATGGCAGATACTCCC 37
|||||||||||||||||||||||||||||||||||||
Sbjct 223 AGATCTCTTAAGGGCAGTCCCAAGATCCAGAGCAGAGATGTATGATGACGTCCACAGCGATGGCAGATACTCCC 296
Query 38 TCAGTGGATCTGTAGCTCACTCTAGAGATGCCGGAAGAGAAGGCCTGAGAAGTGACGTATTTCCAGGGCCTTCC 111
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 TCAGTGGATCTGTAGCTCACTCTAGAGATGCCGGAAGAGAAGGCCTGAGAAGTGACGTATTTCCAGGGCCTTCC 370
Query 112 TTCAGATCAAGCAACCCTTCCATCAGTGATGACAGCTACTTTCGCAAAGAATGTGGCCGGGATCTGGAATTTTC 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 TTCAGATCAAGCAACCCTTCCATCAGTGATGACAGCTACTTTCGCAAAGAATGTGGCCGGGATCTGGAATTTTC 444
Query 186 TCACTCTGATTCTCGGGACCAGGTCATTGGCCACCGGAAATTGGGGCATTTCCGTTCTCAGGACTGGAAATTTG 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 TCACTCTGATTCTCGGGACCAGGTCATTGGCCACCGGAAATTGGGGCATTTCCGTTCTCAGGACTGGAAATTTG 518
Query 260 CGCTCCGTGGTTCTTGGGAACAAGACTTTGGCCATCCAGTTTCTCAAGAGTCCTCTTGGTCACAGGAGTATAGT 333
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 CGCTCCGTGGTTCTTGGGAACAAGACTTTGGCCATCCAGTTTCTCAAGAGTCCTCTTGGTCACAGGAGTATAGT 592
Query 334 TTTGGTCCCTCTGCAGTTTTGGGGGACTTTGGATCTTCCAGGCTGATTGAGAAAGAGTGTTTGGAGAAGGAGAG 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 TTTGGTCCCTCTGCAGTTTTGGGGGACTTTGGATCTTCCAGGCTGATTGAGAAAGAGTGTTTGGAGAAGGAGAG 666
Query 408 TCGGGATTATGACGTGGACCATCCTGGGGAGGCTGACTCTGTGCTTAGGGGCAGCAGTCAAGTCCAGGCCAGAG 481
||||||||||||||||||||||||||||||||||||||||||||||||||||.|||||||||||||||||||||
Sbjct 667 TCGGGATTATGACGTGGACCATCCTGGGGAGGCTGACTCTGTGCTTAGGGGCGGCAGTCAAGTCCAGGCCAGAG 740
Query 482 GTCGAGCTCTAAACATCGTTGACCAGGAAGGTTCCCTCCTAGGAAAGGGGGAGACTCAGGGCCTGCTCACAGCT 555
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 GTCGAGCTCTAAACATCGTTGACCAGGAAGGTTCCCTCCTAGGAAAGGGGGAGACTCAGGGCCTGCTCACAGCT 814
Query 556 AAGGGGGGTGTTGGGAAACTTGTCACATTGAGAAATGTGAGCACAAAAAAAATACCCACCGTGAATCGTATTAC 629
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 AAGGGGGGTGTTGGGAAACTTGTCACATTGAGAAATGTGAGCACAAAAAAAATACCCACCGTGAATCGTATTAC 888
Query 630 TCCCAAAACTCAGGGCACTAACCAAATCCAGAAAAACACTCCAAGTCCTGATGTGACCCTGGGGACAAACCCAG 703
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 TCCCAAAACTCAGGGCACTAACCAAATCCAGAAAAACACTCCAAGTCCTGATGTGACCCTGGGGACAAACCCAG 962
Query 704 GGACAGAAGATATCCAGTTCCCCATTCAGAAGATCCCTCTGGGGCTGGATCTGAAGAATCTTCGGCTCCCCAGA 777
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 GGACAGAAGATATCCAGTTCCCCATTCAGAAGATCCCTCTGGGGCTGGATCTGAAGAATCTTCGGCTCCCCAGA 1036
Query 778 AGAAAGATGAGCTTTGACATCATAGATAAGTCTGATGTTTTTTCAAGATTTGGGATAGAAATAATCAAATGGGC 851
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 AGAAAGATGAGCTTTGACATCATAGATAAGTCTGATGTTTTTTCAAGATTTGGGATAGAAATAATCAAATGGGC 1110
Query 852 AGGATTCCACACCATAAAAGATGATATTAAATTTTCCCAACTTTTCCAGACTCTCTTTGAACTTGAAACAGAAA 925
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111 AGGATTCCACACCATAAAAGATGATATTAAATTTTCCCAACTTTTCCAGACTCTCTTTGAACTTGAAACAGAAA 1184
Query 926 CCTGTGCTAAAATGCTTGCCTCATTCAAATGTTCCTTAAAACCAGAGCACAGAGATTTTTGCTTTTTTACTATC 999
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185 CCTGTGCTAAAATGCTTGCCTCATTCAAATGTTCCTTAAAACCAGAGCACAGAGATTTTTGCTTTTTTACTATC 1258
Query 1000 AAATTTTTAAAGCACTCTGCTTTGAAAACACCCAGAGTTGATAATGAGTTTTTAAACATGCTTTTAGACAAAGG 1073
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 AAATTTTTAAAGCACTCTGCTTTGAAAACACCCAGAGTTGATAATGAGTTTTTAAACATGCTTTTAGACAAAGG 1332
Query 1074 TGCTGTGAAGACCAAAAATTGCTTTTTTGAAATCATAAAGCCTTTTGACAAGTACATAATGAGACTTCAAGACC 1147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333 TGCTGTGAAGACCAAAAATTGCTTTTTTGAAATCATAAAGCCTTTTGACAAGTACATAATGAGACTTCAAGACC 1406
Query 1148 GGCTTCTGAAGAGTGTCACACCTTTGCTTATGGCCTGCAATGCCTACGAGCTAAGTGTCAAGATGAAGACCCTC 1221
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407 GGCTTCTGAAGAGTGTCACACCTTTGCTTATGGCCTGCAATGCCTACGAGCTAAGTGTCAAGATGAAGACCCTC 1480
Query 1222 AGTAACCCCCTGGACTTGGCTCTTGCCCTAGAAACCACCAACTCTCTCTGCCGGAAGTCTTTGGCCCTTTTGGG 1295
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481 AGTAACCCCCTGGACTTGGCTCTTGCCCTAGAAACCACCAACTCTCTCTGCCGGAAGTCTTTGGCCCTTTTGGG 1554
Query 1296 ACAGACATTTTCCTTGGCCTCTTCTTTCCGGCAGGAGAAAATCTTAGAAGCTGTCGGCCTGCAAGATATAGCTC 1369
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555 ACAGACATTTTCCTTGGCCTCTTCTTTCCGGCAGGAGAAAATCTTAGAAGCTGTCGGCCTGCAAGATATAGCTC 1628
Query 1370 CCTCACCTGCTGCGTTTCCAAACTTCGAAGACTCCACTTTGTTTGGGCGAGAGTACATAGACCACCTGAAGGCC 1443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1629 CCTCACCTGCTGCGTTTCCAAACTTCGAAGACTCCACTTTGTTTGGGCGAGAGTACATAGACCACCTGAAGGCC 1702
Query 1444 TGGCTAGTCAGCAGCGGATGTCCCCTCCAGGTTAAGAAAGCCGAACCAGAGCCGATGCGAGAGGAGGAGAAAAT 1517
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1703 TGGCTAGTCAGCAGCGGATGTCCCCTCCAGGTTAAGAAAGCCGAACCAGAGCCGATGCGAGAGGAGGAGAAAAT 1776
Query 1518 GATTCCTCCTACGAAACCTGAAATTCAGGCCAAGGCTCCAAGTAGTCTGAGTGATGCTGTCCCCCAGCGAGCAG 1591
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1777 GATTCCTCCTACGAAACCTGAAATTCAGGCCAAGGCTCCAAGTAGTCTGAGTGATGCTGTCCCCCAGCGAGCAG 1850
Query 1592 ATCACAGGGTAGTGGGCACCATCGACCAGCTTGTGAAACGTGTCATCGAAGGCAGCCTGTCTCCCAAAGAGAGA 1665
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1851 ATCACAGGGTAGTGGGCACCATCGACCAGCTTGTGAAACGTGTCATCGAAGGCAGCCTGTCTCCCAAAGAGAGA 1924
Query 1666 ACTCTTCTCAAAGAGGACCCTGCTTACTGGTTTTTGTCTGATGAAAATAGTCTGGAGTATAAATATTACAAGCT 1739
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1925 ACTCTTCTCAAAGAGGACCCTGCTTACTGGTTTTTGTCTGATGAAAATAGTCTGGAGTATAAATATTACAAGCT 1998
Query 1740 GAAGTTGGCAGAAATGCAGCGGATGAGCGAGAACTTGCGAGGAGCCGACCAGAAGCCGACCTCAGCAGACTGTG 1813
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1999 GAAGTTGGCAGAAATGCAGCGGATGAGCGAGAACTTGCGAGGAGCCGACCAGAAGCCGACCTCAGCAGACTGTG 2072
Query 1814 CAGTGAGGGCCATGCTGTACTCCCGGGCTGTCCGCAACCTCAAGAAGAAACTCCTTCCGTGGCAGCGGCGGGGG 1887
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2073 CAGTGAGGGCCATGCTGTACTCCCGGGCTGTCCGCAACCTCAAGAAGAAACTCCTTCCGTGGCAGCGGCGGGGG 2146
Query 1888 CTCCTCCGTGCTCAAGGGCTCCGGGGCTGGAAGGCGAGGAGAGCGACCACCGGGACCCAGACCCTCCTATCCTC 1961
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2147 CTCCTCCGTGCTCAAGGGCTCCGGGGCTGGAAGGCGAGGAGAGCGACCACCGGGACCCAGACCCTCCTATCCTC 2220
Query 1962 AGGCACCAGGCTGAAACACCACGGCCGGCAGGCTCCAGGCCTCTCACAGGCAAAACCATCCCTGCCAGACAGAA 2035
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2221 AGGCACCAGGCTGAAACACCACGGCCGGCAGGCTCCAGGCCTCTCACAGGCAAAACCATCCCTGCCAGACAGAA 2294
Query 2036 ATGATGCTGCCAAGGACTGCCCGCCAGACCCAGTTGGACCTTCTCCTCAGGACCCCAGCTTAGAAGCCTCAGGC 2109
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2295 ATGATGCTGCCAAGGACTGCCCGCCAGACCCAGTTGGACCTTCTCCTCAGGACCCCAGCTTAGAAGCCTCAGGC 2368
Query 2110 CCATCCCCCAAGCCAGCAGGAGTGGACATCTCTGAAGCACCTCAGACCTCTTCTCCCTGCCCATCTGCTGACAT 2183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2369 CCATCCCCCAAGCCAGCAGGAGTGGACATCTCTGAAGCACCTCAGACCTCTTCTCCCTGCCCATCTGCTGACAT 2442
Query 2184 TGACATGAAGACAATGGAGACTGCAGAGAAACTGGCTAGATTTGTTGCTCAGGTGGGACCAGAGATCGAACAAT 2257
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2443 TGACATGAAGACAATGGAGACTGCAGAGAAACTGGCTAGATTTGTTGCTCAGGTGGGACCAGAGATCGAACAAT 2516
Query 2258 TCAGCATAGAAAACAGCACCGATAACCCTGACCTGTGGTTTCTACATGACCAAAATAGTTCTGCTTTCAAATTC 2331
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2517 TCAGCATAGAAAACAGCACCGATAACCCTGACCTGTGGTTTCTACATGACCAAAATAGTTCTGCTTTCAAATTC 2590
Query 2332 TATCGAAAGAAAGTGTTTGAACTATGTCCATCAATTTGTTTCACGTCATCTCCGCACAACCTTCACACTGGTGG 2405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2591 TATCGAAAGAAAGTGTTTGAACTATGTCCATCAATTTGTTTCACGTCATCTCCGCACAACCTTCACACTGGTGG 2664
Query 2406 TGGTGACACCACGGGTTCTCAGGAGAGCCCCGTGGACCTCATGGAAGGGGAAGCAGAGTTTGAAGACGAGCCCC 2479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2665 TGGTGACACCACGGGTTCTCAGGAGAGCCCCGTGGACCTCATGGAAGGGGAAGCAGAGTTTGAAGACGAGCCCC 2738
Query 2480 CTCCGCGGGAGGCTGAGCTGGAGAGCCCAG-------------------------------------------- 2509
||||||||||||||||||||||||||||||
Sbjct 2739 CTCCGCGGGAGGCTGAGCTGGAGAGCCCAGAGGTGATGCCTGAGGAGGAGGACGAGGACGATGAGGATGGGGGA 2812
Query 2510 -------------------------------------------------------------------------- 2509
Sbjct 2813 GAGGAGGCCCCCGCTCCTGGAGGGGCGGGCAAGTCTGAGGGCAGCACCCCTGCCGACGGCCTTCCCGGCGAGGC 2886
Query 2510 --------------------------------------AGGCCTCCTCAGGTACCTGCTTCCCTCGGAAGAGGA 2545
||||||||||||||||||||||||||||||||||||
Sbjct 2887 TGCCGAGGACGACCTGGCTGGAGCACCTGCCTTGTCACAGGCCTCCTCAGGTACCTGCTTCCCTCGGAAGAGGA 2960
Query 2546 TCAGCAGCAAGTCATTGAAGGTTGGCATGATTCCAGCTCCCAAGAGAGTGTGTCTCATCCAGGAGCCAAA---- 2615
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2961 TCAGCAGCAAGTCATTGAAGGTTGGCATGATTCCAGCTCCCAAGAGAGTGTGTCTCATCCAGGAGCCAAAAGAG 3034
Query 2616 -------------------------------------------------------------------------- 2615
Sbjct 3035 GCGAGAACCCACCAGTACAGCAGAGCTGAAGCCTGTTCCCAGAACGGGTCTCTTGTCCCATTGCAGTCCCCTGC 3108
Query 2616 -----------------------------------AGTCCATGAACCAGTTCGAATTGCCTATGACAGGCCTCG 2654
|||||||||||||||||||||||||||||||||||||||
Sbjct 3109 CCGATTCAGCAACCACTGACTGTTTTCCAAGCCCCAGTCCATGAACCAGTTCGAATTGCCTATGACAGGCCTCG 3182
Query 2655 GGGTCGTCCCATGTCCAAAAAGAAGAAACCCAAGGACTTGGACTTCGCCCAGCAGAAGCTGACCGATAAGAACC 2728
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3183 GGGTCGTCCCATGTCCAAAAAGAAGAAACCCAAGGACTTGGACTTCGCCCAGCAGAAGCTGACCGATAAGAACC 3256
Query 2729 TGGGCTTCCAGATGCTGCAGAAGATGGGCTGGAAGGAGGGCCATGGCCTGGGCTCCCTCGGAAAGGGCATCAGG 2802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3257 TGGGCTTCCAGATGCTGCAGAAGATGGGCTGGAAGGAGGGCCATGGCCTGGGCTCCCTCGGAAAGGGCATCAGG 3330
Query 2803 GAGCCGGTCAGCGTGTACGCAGCAGGCAGCCTGGGGTGGGAGTGGGTGGGGCCTCAGTCCTTCCACCTGCAGCC 2876
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3331 GAGCCGGTCAGCGTGTACGCAGCAGGCAGCCTGGGGTGGGAGTGGGTGGGGCCTCAGTCCTTCCACCTGCAGCC 3404
Query 2877 TGCCGCTTGGCTCCTTCACAGCCAAGATGGCTTACAGCTGGCAGTTGATTTTTGTTTTTTAAACAGAAGGCATC 2950
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3405 TGCCGCTTGGCTCCTTCACAGCCAAGATGGCTTACAGCTGGCAGTTGATTTTTGTTTTTTAAACAGAAGGCATC 3478
Query 2951 TTCAGATGAGAAGC------------------------------------------------------------ 2964
||||||||||||||
Sbjct 3479 TTCAGATGAGAAGCTGATCATTTACATGTGCAGGTGTTTACAGGGCTCCTTTCTGTCCTGGTGTAGATTTTTTA 3552
Query 2965 -------------------------------------------------------------------------- 2964
Sbjct 3553 ACCAGCTTGTTGGCCCTGGTCATTTTGGCCACATTTGTGACCATCATAAAAGCTAAGTGGTATTTCTGTGTAGT 3626
Query 2965 -------------------------------------------------------------------------- 2964
Sbjct 3627 TTCCGTCTGGAACTGCTTTCCCATTCCCGGGAACCCATAGCCGGGCCAGCCAGGGTCCCGAACACAGGCCCAAA 3700
Query 2965 -------------------------------------------------------------------------- 2964
Sbjct 3701 GTTTATTAAACCCCGATCATAACCTCCAGCAGGCATTTCATTTAATACTGAGCTTAGTTCCTGCTGGGTAAGGC 3774
Query 2965 -------------------------------------------------------------------------- 2964
Sbjct 3775 ATTCCGAGGTAACCAGGGCCCTCTGGGCACCCCCTCAAAAGCCAGCTCTTCGAGGGTGAGTACTCCTTGTTTCT 3848
Query 2965 -------------------------------------------------------------------------- 2964
Sbjct 3849 ACTGTGAGTCGCGTCTTGATTTTCCCTTTCTTTGATGTCTCAGTGTGTGTCCCAAACACCTGCATCTCATGGAC 3922
Query 2965 -------------------------------------------------------------------------- 2964
Sbjct 3923 TGTTTGTGCCCATGCCCAGTTCCTGGCATGCCAGGCCCTGGGCTCAGGTGCACAACTGACTCTCTTTTTCACTC 3996
Query 2965 -------------------------------------------------------------------------- 2964
Sbjct 3997 CCTAGGGGAACCCCCTCGGAAGGGGAAGGGTTGGGTGCTGACGGGCAGGAGCACAAAGAAGACACATTCGATGT 4070
Query 2965 -------------------------------------------------------------------------- 2964
Sbjct 4071 GTTCCGACAGAGGATGATGCAGATGTACAGACACAAGCGGGCCAACAAATAGTTCCAGGGTCACCCCCGAGAGG 4144
Query 2965 -------------------------------------------------------------------------- 2964
Sbjct 4145 ACAACAGGCATCTGGAAGTGCTCTCTCGCCACTCTGGGTGCTTTACTGTCTCTGGCTTGTTTCCATCACTGGAA 4218
Query 2965 -------------------------------------------------------------------------- 2964
Sbjct 4219 ATCACTTAGAGAATTGTAGTGTTTTTGGTCCTTGATAAAGCCTAGAAGACATTTGTGATGTTACAAAATGGAAG 4292