Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_11516
- Subject:
- XR_001746995.2
- Aligned Length:
- 4168
- Identities:
- 2114
- Gaps:
- 2045
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GTAGATAGGTAGGTAGGTAGATTAGATTAAATTGGATTAGATTTGATGAGATAAACAGGTTTGTGTTCAGGGGA 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 ACACGAGGTTAAGCAAGCCTAAGCAGGTTTTTTGGTTGAAGGTCTTCTCAGAACTTCTAGTATGTCAATATGCC 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 TTGTAGATCTCTAAGTGGCAGGGACAGAGACTGGGGTACAGATTTCCCAAACATATTTGTTTAAGAAACCTGCT 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 TTTTTCCCCCAGAATCTTTTGTGGAACTTTTGCCTCATGGAACACAATTTCAGAAATAATTTATACGTGATGAC 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 TGTGTAGAATGTTTTTCTTGTCAGGATTTTCAGTTTAGGTAAGGCCAAGGCATTTTTTTTTTACAGTACATTGA 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 AAACTAGATATGATATCAAGAGAAAAAATTATGCTTGGCTACTTAGAATGACATACTATTTTTAATAAATTTGT 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 ATTTTGTATCATCAGTATTACTATTCAGTGTAGGGTATTTTTTATGCCCAATGCTAATGTGCTATGACTTGGTA 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 AAATTAATTTACCCTAGGATTTACATAACCAGATTAATAAATTGTGAGTTGTAGGGAGTCTTGGAATTGCCTGA 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 ATTGACATTAAAATATTTGTTTTGAGAAATTTTTTTTTAACCTTGGTTTTACGTAACCAAGGACATACACTACA 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 TTATAAATATTGTGATGGTTTATTTTTCCAAACTTTTCTGAATGTGGGGTGCCCATTGAGTAATAATGCAAATC 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 ACCAATGACTTTGTAAAAATTGACATGATGAGTAGAACTGCAGAATTCAAAGATGATGATGATGATTTTTGAAA 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 CGATGTTTCCAGAATTGTTAAATTATGTATCAACATATGTTAACTGCAACTTCTCATGTTTAATGATGTTTACA 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 ATTAATACAATACCATACTCGCCAGTATAATACTAACAGTCATAATTAACTCAGAATAGATTCTTTGAAGTGGT 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 TCAAAGGGCTTTTCATAATAAATAAGTAGCCTCTAATCAGCTAATATAAAGTGGGTATTTTTTAGGATGTGAGA 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 AGTACTGGTATGTCTGATAAAACATATAATTTAGGTTGACAAAATGAGTTTGAATGATCCAGATTCACTACCCC 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 AAGTCAGAAGGAAGTCTGACATTCCAGTGAAAGCTTTATTTAGACAGAGACAAGGAATCTTTGAGATAACAGGC 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 TTTGGACTGTGCTATCTTGAGTGTTAGAGCTGAGTAGTTTTCCCAGAATCTCTAAGTCCTTTTTATGCTCTTTT 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 ATGAATGAATAGAATTAGTAAAAGATAAATAAATTTTTTCTTTTGGATTTCTTAACCAGTGGAAAAAATGTTGA 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 CTTTAAAAGTTCATAAAATCAAATTTTGCTTAAGAATATGTTATTTCCACTTGTGAGGCCAGCCTGGTAGACCT 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 CTGGGATCCTTTTCTGTTCACTCACACACCACTGAGATAAGGAGTGAAGTGTGGGCTAAATAGGGCTGAGGCTT 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 GGGCAAGGGCATTTCTGCCAGAGCACCAGAGACGTCAGCATCTCAAGGGCACTGTGGTATGGAAAAGGACGCCA 1554
Query 1 ------------------------------------------ATGAGGGTCCCTGTATTTGAGGATATAAAAGA 32
||||||||||||||||||||||||||||||||
Sbjct 1555 CATGAGTAAATTTTAAAAATATAAATATTTTAAAGGGTAAAAATGAGGGTCCCTGTATTTGAGGATATAAAAGA 1628
Query 33 TGAAACTGAAGAAGAAAAGATAGGGGAAGAAGAAAATGAAGAAGACCAGGTCTTCTATAAGCCTGTTATTGAAG 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1629 TGAAACTGAAGAAGAAAAGATAGGGGAAGAAGAAAATGAAGAAGACCAGGTCTTCTATAAGCCTGTTATTGAAG 1702
Query 107 ACTTAAGCATGGAATTGGCCAGAAAATGCACGGAACTCATTAGCGATATCCGTTATAAAGAAGAGTTTAAAAAG 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1703 ACTTAAGCATGGAATTGGCCAGAAAATGCACGGAACTCATTAGCGATATCCGTTATAAAGAAGAGTTTAAAAAG 1776
Query 181 TCCAAGGATAAGTGTACATTTGTGACTGACAGTCCTATGCTAAACCATGTAAAAAATATCGGTGCTTTTATTTC 254
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1777 TCCAAGGATAAGTGTACATTTGTGACTGACAGTCCTATGCTAAACCATGTAAAAAATATCGGTGCTTTTATTTC 1850
Query 255 TGAGGCAAAATACAAAGGCACCATTAAAGCTGACCTTTCTAATTCTCTTTATAAGCGGATGCCAGCCACAATTG 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1851 TGAGGCAAAATACAAAGGCACCATTAAAGCTGACCTTTCTAATTCTCTTTATAAGCGGATGCCAGCCACAATTG 1924
Query 329 ACAGTGTTTTTGCAGGAGAAGTTACACAGCTCCAGAGTGAGGTGGCCTACAAGCAGAAACATGATGCTGCCAAA 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1925 ACAGTGTTTTTGCAGGAGAAGTTACACAGCTCCAGAGTGAGGTGGCCTACAAGCAGAAACATGATGCTGCCAAA 1998
Query 403 GGATTCTCAGATTATGCCCACATGAAGGAGCCCCCTGAGGTTAAACATGCCATGGAGGTCAATAAACACCAGAG 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1999 GGATTCTCAGATTATGCCCACATGAAGGAGCCCCCTGAGGTTAAACATGCCATGGAGGTCAATAAACACCAGAG 2072
Query 477 TAATATTTCTTATAGGAAAGACGTGCAGGACACCCACACGTACAGTGCAGAACTTGACCTACCAGACATCAAGA 550
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.||||||||||||||
Sbjct 2073 TAATATTTCTTATAGGAAAGACGTGCAGGACACCCACACGTACAGTGCAGAACTTGACCGACCAGACATCAAGA 2146
Query 551 TGGCAACCCAGATCTCTAAGATCATAAGCAATGCAGAATACAAGAAAGGACAAGGAATAATGAATAAAGAGCCC 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2147 TGGCAACCCAGATCTCTAAGATCATAAGCAATGCAGAATACAAGAAAGGACAAGGAATAATGAATAAAGAGCCC 2220
Query 625 GCTGTAATTGGAAGACCAGATTTTGAACATGCCGTGGAAGCTTCTAAACTTTCTAGTCAAATTAAATACAAAGA 698
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2221 GCTGTAATTGGAAGACCAGATTTTGAACATGCCGTGGAAGCTTCTAAACTTTCTAGTCAAATTAAATACAAAGA 2294
Query 699 AAAATTTGATAATGAAATGAAGGATAAGAAACATCATTACAATCCTCTTGAAAGTGCTTCTTTTAGGCAGAATC 772
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2295 AAAATTTGATAATGAAATGAAGGATAAGAAACATCATTACAATCCTCTTGAAAGTGCTTCTTTTAGGCAGAATC 2368
Query 773 AGCTTGCTGCTACACTGGCGAGCAATGTGAAGTACAAGAAAGACATTCAAAATATGCATGATCCAGTTTCAGAT 846
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2369 AGCTTGCTGCTACACTGGCGAGCAATGTGAAGTACAAGAAAGACATTCAAAATATGCATGATCCAGTTTCAGAT 2442
Query 847 CTCCCAAATTTGTTGTTTTTAGACCATGTTTTGAAAGCCAGCAAAATGCTCAGCGGCCGAGAATATAAAAAGCT 920
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2443 CTCCCAAATTTGTTGTTTTTAGACCATGTTTTGAAAGCCAGCAAAATGCTCAGCGGCCGAGAATATAAAAAGCT 2516
Query 921 CTTTGAGGAAAACAAAGGAATGTATCATTTTGATGCAGATGCTGTGGAACATCTGCACCATAAAGGCAATGCCG 994
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2517 CTTTGAGGAAAACAAAGGAATGTATCATTTTGATGCAGATGCTGTGGAACATCTGCACCATAAAGGCAATGCCG 2590
Query 995 TCCTCCAAAGTCAGGTGAAATATAAAGAAGAATATGAGAAAAATAAGGGAAAGCCAATGCTTGAATTTGTTGAG 1068
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2591 TCCTCCAAAGTCAGGTGAAATATAAAGAAGAATATGAGAAAAATAAGGGAAAGCCAATGCTTGAATTTGTTGAG 2664
Query 1069 ACACCATCATATCAAGCTTCAAAGGAGGCTCAAAAGATGCAAAGTGAAAAAGTTTACAAAGAGGATTTTGAGAA 1142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2665 ACACCATCATATCAAGCTTCAAAGGAGGCTCAAAAGATGCAAAGTGAAAAAGTTTACAAAGAGGATTTTGAGAA 2738
Query 1143 GGAGATTAAAGGAAGGTCATCACTGGATTTAGACAAGACTCCAGAATTTTTACATGTAAAGTACATCACCAACC 1216
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2739 GGAGATTAAAGGAAGGTCATCACTGGATTTAGACAAGACTCCAGAATTTTTACATGTAAAGTACATCACCAACC 2812
Query 1217 TTCTGAGGGAGAAAGAATATAAAAAAGATTTGGAAAATGAGATAAAAGGGAAAGGAATGGAACTTAATTCAGAA 1290
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2813 TTCTGAGGGAGAAAGAATATAAAAAAGATTTGGAAAATGAGATAAAAGGGAAAGGAATGGAACTTAATTCAGAA 2886
Query 1291 GTTCTTGATATCCAAAGAGCAAAGCGAGCCTCTGAAATGGCAAGTGAGAAAGAATACAAGAAAGACCTGGAGTC 1364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2887 GTTCTTGATATCCAAAGAGCAAAGCGAGCCTCTGAAATGGCAAGTGAGAAAGAATACAAGAAAGACCTGGAGTC 2960
Query 1365 AATAATTAAAGGGAAAGGAATGCAAGCTGGCACTGACACCCTTGAAATGCAGCATGCCAAGAAGGCTGCAGAGA 1438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2961 AATAATTAAAGGGAAAGGAATGCAAGCTGGCACTGACACCCTTGAAATGCAGCATGCCAAGAAGGCTGCAGAGA 3034
Query 1439 TAGCGAGTGAGAAAGACTATAAAAGAGATCTGGAGACTGAAATTAAAGGGAAAGGGATGCAGGTGAGCACAGAC 1512
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3035 TAGCGAGTGAGAAAGACTATAAAAGAGATCTGGAGACTGAAATTAAAGGGAAAGGGATGCAGGTGAGCACAGAC 3108
Query 1513 ACTCTTGATGTCCAGAGAGCTAAGAAAGCATCCGAGATGGCCAGCCAGAAACAATACAAGAAGGACTTAGAAAA 1586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3109 ACTCTTGATGTCCAGAGAGCTAAGAAAGCATCCGAGATGGCCAGCCAGAAACAATACAAGAAGGACTTAGAAAA 3182
Query 1587 TGAAATTAAAGGGAAAGGAATGCAAGTGAGCATGGATATCCCAGATATCCTTCGAGCCAAGAGGACATCTGAAA 1660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3183 TGAAATTAAAGGGAAAGGAATGCAAGTGAGCATGGATATCCCAGATATCCTTCGAGCCAAGAGGACATCTGAAA 3256
Query 1661 TCTATAGCCAGAGAAAGTATAAAGATGAAGCAGAGAAGATGCTTTCTAACTATTCTACCATAGCAGATACTCCT 1734
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3257 TCTATAGCCAGAGAAAGTATAAAGATGAAGCAGAGAAGATGCTTTCTAACTATTCTACCATAGCAGATACTCCT 3330
Query 1735 GAAATTCAGAGAATTAAGACAACTCAACAAAACATTAGTGCGGTATTTTATAAGAAAGAAGTGGGAGCTGGCAC 1808
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3331 GAAATTCAGAGAATTAAGACAACTCAACAAAACATTAGTGCGGTATTTTATAAGAAAGAAGTGGGAGCTGGCAC 3404
Query 1809 TGCAGTGAAAGATAGCCCAGAGATCGAACGAGTGAAGAAAAATCAGCAGAATATTAGTTCAGTGAAATACAAAG 1882
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3405 TGCAGTGAAAGATAGCCCAGAGATCGAACGAGTGAAGAAAAATCAGCAGAATATTAGTTCAGTGAAATACAAAG 3478
Query 1883 AAGAGATTAAACATGCAACAGCCATTTCTGATCCTCCAGAACTAAAGAGAGTTAAAGAAAACCAGAAGAACATC 1956
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3479 AAGAGATTAAACATGCAACAGCCATTTCTGATCCTCCAGAACTAAAGAGAGTTAAAGAAAACCAGAAGAACATC 3552
Query 1957 AGCAATCTCCAGTATAAAGAGCAAAACTACAAGGCCACTCCGGTAAGCATGACCCCGGAGATAGAGAGAGTGAG 2030
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3553 AGCAATCTCCAGTATAAAGAGCAAAACTACAAGGCCACTCCGGTAAGCATGACCCCGGAGATAGAGAGAGTGAG 3626
Query 2031 GCGAAACCAGGAGCAGCTGAGTGCGG--------------------CAAGTCG-----------TTTCTGTTTC 2073
|||||||||||||||||||||||||| ||| || ||||||.|.|
Sbjct 3627 GCGAAACCAGGAGCAGCTGAGTGCGGTAAAATATAAGGGAGAACTTCAA--CGGGGAACTGCAATTTCTGATCC 3698
Query 2074 -------CT----------------------------------------TTTAT-------------------- 2080
|| |||||
Sbjct 3699 ACCAGAGCTGAAGAGGGCAAAAGAAAACCAGAAAAACATCAGCAATGTGTTTATTACAGAGGTCAGCTGGGAAG 3772
Query 2081 -------ATTTT-----------CTCAAA---------------------CATAACATATTTTTATTTA----- 2110
|.||| ||.||| .|.||.||| |||
Sbjct 3773 AGCTACCACTTTAAGTGTAACTCCTGAAATGGAAAGAGTGAAGAAGAATCAAGAAAATA-------TTAGCTCG 3839
Query 2111 --AAAATATGCCCTTTGGAAGG-CCATTATCCTTAGCAAAC--------------------------------- 2148
|||||||.||| ||| |||| ||||
Sbjct 3840 GTAAAATATACCC------AGGACCAT----------AAACAGATGAAAGGTAGACCAAGTCTGATTTTAGATA 3897
Query 2149 -------------------------------------------------------------------------- 2148
Sbjct 3898 CACCTGCTATGAGACATGTTAAAGAAGCACAAAATCATATTTCAATGGTAGGGTCCAACCAGATCATTCTTAAA 3971
Query 2149 -------------------------------------------------------------------------- 2148
Sbjct 3972 ACATGCTAAGGAATGGGCGGATCCAGTGCACGGATGGCATTACTTCACTATTAATCCGATAACTAACAAAGCAT 4045
Query 2149 -------------------------------------------------------------------------- 2148
Sbjct 4046 GGAAATGTGGTTGGCTTGTCTTTTGAGGGAGGGGCATTTCTAATCACACTGAAATGCAGTGGAAACATTTAGTC 4119
Query 2149 ------------------------ 2148
Sbjct 4120 TAATAAAATGATTTTTCTCAGTGA 4143
