Nucleotide Global Alignment

Description

Query:
ccsbBroad304_11516
Subject:
XR_001746996.1
Aligned Length:
3188
Identities:
2128
Gaps:
1043

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  CATGTGACAGCTAACATAAGGATTGAAGCTGATCAAAGCAGGAATATACATTTTATTCAATACCAGAGGTGGTT  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  TGCAGATCCATTCTTAATTATGCAAAATACCCTTATCACACAGCTCTTCTCATGTTTGTTTATTGAGGATTTGA  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  AATCATTTGGAAATGACCACTCAGTCTGCATGTTACTGAGGTGTGGGATAAAATACAACCGTAAATTTCAAATT  222

Query    1  ----------------------------------ATGAGGG---------------TC--CCTGTAT-------  16
                                              ||||.||               ||  ||.| ||       
Sbjct  223  GAGTGTGATGAACGAGGGGGAAGAGAAATATCAAATGAAGGGGAAAGAAACAAAAATCGACCAG-ATGACAAAA  295

Query   17  TTGAGGATATAAAAGA-----TGAA------ACTGAAG-------AAGAAAAGAT------AGGGGA----AGA  62
            |||.|..|.|.|||||     ||||      |.|||||       |||||.|.||      |.||||    |||
Sbjct  296  TTGTGTGTTTTAAAGACTGACTGAAATGCACAGTGAAGAGTCCCTAAGAACATATTACGTGATGGGAAATGAGA  369

Query   63  AGAAAATGAA----------GAAGACCAGGTCTTCTATAAGCCTGTTATTGAAGACTTAAGCATGGAATTGGCC  126
            |..||.||.|          ||.||  |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  370  AATAACTGCACTGCAAGCCTGATGA--AGGTCTTCTATAAGCCTGTTATTGAAGACTTAAGCATGGAATTGGCC  441

Query  127  AGAAAATGCACGGAACTCATTAGCGATATCCGTTATAAAGAAGAGTTTAAAAAGTCCAAGGATAAGTGTACATT  200
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  442  AGAAAATGCACGGAACTCATTAGCGATATCCGTTATAAAGAAGAGTTTAAAAAGTCCAAGGATAAGTGTACATT  515

Query  201  TGTGACTGACAGTCCTATGCTAAACCATGTAAAAAATATCGGTGCTTTTATTTCTGAGGCAAAATACAAAGGCA  274
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  516  TGTGACTGACAGTCCTATGCTAAACCATGTAAAAAATATCGGTGCTTTTATTTCTGAGGCAAAATACAAAGGCA  589

Query  275  CCATTAAAGCTGACCTTTCTAATTCTCTTTATAAGCGGATGCCAGCCACAATTGACAGTGTTTTTGCAGGAGAA  348
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  590  CCATTAAAGCTGACCTTTCTAATTCTCTTTATAAGCGGATGCCAGCCACAATTGACAGTGTTTTTGCAGGAGAA  663

Query  349  GTTACACAGCTCCAGAGTGAGGTGGCCTACAAGCAGAAACATGATGCTGCCAAAGGATTCTCAGATTATGCCCA  422
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  664  GTTACACAGCTCCAGAGTGAGGTGGCCTACAAGCAGAAACATGATGCTGCCAAAGGATTCTCAGATTATGCCCA  737

Query  423  CATGAAGGAGCCCCCTGAGGTTAAACATGCCATGGAGGTCAATAAACACCAGAGTAATATTTCTTATAGGAAAG  496
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  738  CATGAAGGAGCCCCCTGAGGTTAAACATGCCATGGAGGTCAATAAACACCAGAGTAATATTTCTTATAGGAAAG  811

Query  497  ACGTGCAGGACACCCACACGTACAGTGCAGAACTTGACCTACCAGACATCAAGATGGCAACCCAGATCTCTAAG  570
            |||||||||||||||||||||||||||||||||||||||.||||||||||||||||||||||||||||||||||
Sbjct  812  ACGTGCAGGACACCCACACGTACAGTGCAGAACTTGACCGACCAGACATCAAGATGGCAACCCAGATCTCTAAG  885

Query  571  ATCATAAGCAATGCAGAATACAAGAAAGGACAAGGAATAATGAATAAAGAGCCCGCTGTAATTGGAAGACCAGA  644
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  886  ATCATAAGCAATGCAGAATACAAGAAAGGACAAGGAATAATGAATAAAGAGCCCGCTGTAATTGGAAGACCAGA  959

Query  645  TTTTGAACATGCCGTGGAAGCTTCTAAACTTTCTAGTCAAATTAAATACAAAGAAAAATTTGATAATGAAATGA  718
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  960  TTTTGAACATGCCGTGGAAGCTTCTAAACTTTCTAGTCAAATTAAATACAAAGAAAAATTTGATAATGAAATGA  1033

Query  719  AGGATAAGAAACATCATTACAATCCTCTTGAAAGTGCTTCTTTTAGGCAGAATCAGCTTGCTGCTACACTGGCG  792
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1034  AGGATAAGAAACATCATTACAATCCTCTTGAAAGTGCTTCTTTTAGGCAGAATCAGCTTGCTGCTACACTGGCG  1107

Query  793  AGCAATGTGAAGTACAAGAAAGACATTCAAAATATGCATGATCCAGTTTCAGATCTCCCAAATTTGTTGTTTTT  866
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1108  AGCAATGTGAAGTACAAGAAAGACATTCAAAATATGCATGATCCAGTTTCAGATCTCCCAAATTTGTTGTTTTT  1181

Query  867  AGACCATGTTTTGAAAGCCAGCAAAATGCTCAGCGGCCGAGAATATAAAAAGCTCTTTGAGGAAAACAAAGGAA  940
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1182  AGACCATGTTTTGAAAGCCAGCAAAATGCTCAGCGGCCGAGAATATAAAAAGCTCTTTGAGGAAAACAAAGGAA  1255

Query  941  TGTATCATTTTGATGCAGATGCTGTGGAACATCTGCACCATAAAGGCAATGCCGTCCTCCAAAGTCAGGTGAAA  1014
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1256  TGTATCATTTTGATGCAGATGCTGTGGAACATCTGCACCATAAAGGCAATGCCGTCCTCCAAAGTCAGGTGAAA  1329

Query 1015  TATAAAGAAGAATATGAGAAAAATAAGGGAAAGCCAATGCTTGAATTTGTTGAGACACCATCATATCAAGCTTC  1088
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1330  TATAAAGAAGAATATGAGAAAAATAAGGGAAAGCCAATGCTTGAATTTGTTGAGACACCATCATATCAAGCTTC  1403

Query 1089  AAAGGAGGCTCAAAAGATGCAAAGTGAAAAAGTTTACAAAGAGGATTTTGAGAAGGAGATTAAAGGAAGGTCAT  1162
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1404  AAAGGAGGCTCAAAAGATGCAAAGTGAAAAAGTTTACAAAGAGGATTTTGAGAAGGAGATTAAAGGAAGGTCAT  1477

Query 1163  CACTGGATTTAGACAAGACTCCAGAATTTTTACATGTAAAGTACATCACCAACCTTCTGAGGGAGAAAGAATAT  1236
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1478  CACTGGATTTAGACAAGACTCCAGAATTTTTACATGTAAAGTACATCACCAACCTTCTGAGGGAGAAAGAATAT  1551

Query 1237  AAAAAAGATTTGGAAAATGAGATAAAAGGGAAAGGAATGGAACTTAATTCAGAAGTTCTTGATATCCAAAGAGC  1310
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1552  AAAAAAGATTTGGAAAATGAGATAAAAGGGAAAGGAATGGAACTTAATTCAGAAGTTCTTGATATCCAAAGAGC  1625

Query 1311  AAAGCGAGCCTCTGAAATGGCAAGTGAGAAAGAATACAAGAAAGACCTGGAGTCAATAATTAAAGGGAAAGGAA  1384
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1626  AAAGCGAGCCTCTGAAATGGCAAGTGAGAAAGAATACAAGAAAGACCTGGAGTCAATAATTAAAGGGAAAGGAA  1699

Query 1385  TGCAAGCTGGCACTGACACCCTTGAAATGCAGCATGCCAAGAAGGCTGCAGAGATAGCGAGTGAGAAAGACTAT  1458
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1700  TGCAAGCTGGCACTGACACCCTTGAAATGCAGCATGCCAAGAAGGCTGCAGAGATAGCGAGTGAGAAAGACTAT  1773

Query 1459  AAAAGAGATCTGGAGACTGAAATTAAAGGGAAAGGGATGCAGGTGAGCACAGACACTCTTGATGTCCAGAGAGC  1532
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1774  AAAAGAGATCTGGAGACTGAAATTAAAGGGAAAGGGATGCAGGTGAGCACAGACACTCTTGATGTCCAGAGAGC  1847

Query 1533  TAAGAAAGCATCCGAGATGGCCAGCCAGAAACAATACAAGAAGGACTTAGAAAATGAAATTAAAGGGAAAGGAA  1606
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1848  TAAGAAAGCATCCGAGATGGCCAGCCAGAAACAATACAAGAAGGACTTAGAAAATGAAATTAAAGGGAAAGGAA  1921

Query 1607  TGCAAGTGAGCATGGATATCCCAGATATCCTTCGAGCCAAGAGGACATCTGAAATCTATAGCCAGAGAAAGTAT  1680
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1922  TGCAAGTGAGCATGGATATCCCAGATATCCTTCGAGCCAAGAGGACATCTGAAATCTATAGCCAGAGAAAGTAT  1995

Query 1681  AAAGATGAAGCAGAGAAGATGCTTTCTAACTATTCTACCATAGCAGATACTCCTGAAATTCAGAGAATTAAGAC  1754
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1996  AAAGATGAAGCAGAGAAGATGCTTTCTAACTATTCTACCATAGCAGATACTCCTGAAATTCAGAGAATTAAGAC  2069

Query 1755  AACTCAACAAAACATTAGTGCGGTATTTTATAAGAAAGAAGTGGGAGCTGGCACTGCAGTGAAAGATAGCCCAG  1828
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2070  AACTCAACAAAACATTAGTGCGGTATTTTATAAGAAAGAAGTGGGAGCTGGCACTGCAGTGAAAGATAGCCCAG  2143

Query 1829  AGATCGAACGAGTGAAGAAAAATCAGCAGAATATTAGTTCAGTGAAATACAAAGAAGAGATTAAACATGCAACA  1902
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2144  AGATCGAACGAGTGAAGAAAAATCAGCAGAATATTAGTTCAGTGAAATACAAAGAAGAGATTAAACATGCAACA  2217

Query 1903  GCCATTTCTGATCCTCCAGAACTAAAGAGAGTTAAAGAAAACCAGAAGAACATCAGCAATCTCCAGTATAAAGA  1976
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2218  GCCATTTCTGATCCTCCAGAACTAAAGAGAGTTAAAGAAAACCAGAAGAACATCAGCAATCTCCAGTATAAAGA  2291

Query 1977  GCAAAACTACAAGGCCACTCCGGTAAGCATGACCCCGGAGATAGAGAGAGTGAGGCGAAACCAGGAGCAGCTGA  2050
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2292  GCAAAACTACAAGGCCACTCCGGTAAGCATGACCCCGGAGATAGAGAGAGTGAGGCGAAACCAGGAGCAGCTGA  2365

Query 2051  GTGCGGCAAGTCGTTTCTGTTTCCTTTTATATTTTCTCAAACATAACATATTTTTATTTAAAAATATGCCCTTT  2124
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2366  GTGCGGCAAGTCGTTTCTGTTTCCTTTTATATTTTCTCAAACATAACATATTTTTATTTAAAAATATGCCCTTT  2439

Query 2125  GGAAGGCCATTATCCTTAGCAAAC--------------------------------------------------  2148
            ||||||||||||||||||||||||                                                  
Sbjct 2440  GGAAGGCCATTATCCTTAGCAAACTAACACAGGAACGTAAAACCAAATACTGCATAATAATGAGAGCTAAATGA  2513

Query 2149  --------------------------------------------------------------------------  2148
                                                                                      
Sbjct 2514  TGAGAATACATGGACACATAGAGGGGAATAACAGACACCGGAGCCTGTTGGACGGGAGAGGATGGGAGGAGGGA  2587

Query 2149  --------------------------------------------------------------------------  2148
                                                                                      
Sbjct 2588  GAGGATCCGGAAAAGTAACTGTTGAGTACTGGGCTTAATGCCGGGGTGATGAAGTCATCTGTACAACAAACTCC  2661

Query 2149  --------------------------------------------------------------------------  2148
                                                                                      
Sbjct 2662  CATAACACAAGTTCACCTGTGTAACAAACCTGCACATGTACCGCTGAACTTAAAAGTTTTAAAAGAAAATGAAT  2735

Query 2149  --------------------------------------------------------------------------  2148
                                                                                      
Sbjct 2736  TTGAGCAACATGCAATTATATGGATGAATCATATCATTATAACATGAAAAAGTGAATATGTACATGCAGCATTA  2809

Query 2149  --------------------------------------------------------------------------  2148
                                                                                      
Sbjct 2810  ATTCTTTTGTAAAATTTAACAACTGCAATAATAACGATGATGATAAACGGAATATCTCCAGATTTAATAAAACT  2883

Query 2149  --------------------------------------------------------------------------  2148
                                                                                      
Sbjct 2884  ATCTAAAAATTTAAAAAGGAAAAGTTTTACACCCTCTGCATTTTTGGATGTTCCTTTTCACATTTCCTTGTTGA  2957

Query 2149  --------------------------------------------------------------------------  2148
                                                                                      
Sbjct 2958  AGGGCATGAACTGCGTGTCCAGGAAATTTGGGACTGTGTTGCTGTACCTTAGCTGTGTTTGCTTATTCAAGAGA  3031

Query 2149  --------------------------------------------------------------------------  2148
                                                                                      
Sbjct 3032  TCTTCATTAAGTACCCAAATGTACTGGGCATTGTCCTGGTCACCCAGACACAAAGATGGGTAAAATATAAGGGA  3105

Query 2149  --------------------------------------------------------------------------  2148
                                                                                      
Sbjct 3106  GAACTTCAACGGGGAACTGCAATTTCTGATCCACCAGAGCTGAAGAGGGCAAAAGAAAACCAGAAAAACATCAG  3179

Query 2149  ------  2148
                  
Sbjct 3180  CAATGT  3185

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