Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_11582
- Subject:
- NM_001081443.3
- Aligned Length:
- 1965
- Identities:
- 1232
- Gaps:
- 564
Alignment
Query 1 ATGACGCCCGCCCTCACAGCCCTGCTCTGCCTTGGGCTGAGTCTGGGCCCCAGGACCCGCGTGCAGGCAGGGCC 74
|||||.|.|.|||||.|||.||||.|.|||||.|||||||||.||||||||||||||.|||||||||||||..|
Sbjct 1 ATGACCCTCACCCTCTCAGTCCTGATTTGCCTCGGGCTGAGTGTGGGCCCCAGGACCTGCGTGCAGGCAGGCAC 74
Query 75 CTTCCCCAAACCCACCCTCTGGGCTGAGCCAGGCTCTGTGATCAGCT-GGGGGAGCCCCGTGACCATCTGGTGT 147
|.||||||||||||||||||||||||||||||.||||||||| |||| ||||||..|||||||||.||||||||
Sbjct 75 CCTCCCCAAACCCACCCTCTGGGCTGAGCCAGCCTCTGTGAT-AGCTCGGGGGAAGCCCGTGACCCTCTGGTGT 147
Query 148 CAGGGGAGCCTGGAGGCCCAGGAGTACCGACTGGATAAAGAGGGAAGCCCA-GAGCCCTTGG-ACAGAAATAAC 219
||||||..|||||||.|..||||||||||.||||||||.||||||..|||| |.|||| || |.|||.|.|||
Sbjct 148 CAGGGGCCCCTGGAGACTGAGGAGTACCGTCTGGATAAGGAGGGACTCCCATGGGCCC--GGAAGAGACAGAAC 219
Query 220 CCACTGGAACCCAAGAA--CAAGGCCAGATTCTCCATCCCATCC-------ATGACAGAGCACCATGCGGGGAG 284
||||||||.|| .|.| ||||||||..|||..|||.|||||| ||||||| |||.|||.|
Sbjct 220 CCACTGGAGCC--TGGAGCCAAGGCCAAGTTCCACATTCCATCCACGGTGTATGACAG-------TGCAGGGCG 284
Query 285 ATACCGCTGCCACTATTACAGCTCTGCAGGCTGGTCAGAGCCCAGCGACCCCCTGGAGCTGGTGATGACAGGAT 358
||||||||||.|||||.|.|.|.||||||||||||||||||||||.||||||||||||||||||..||
Sbjct 285 ATACCGCTGCTACTATGAGACCCCTGCAGGCTGGTCAGAGCCCAGTGACCCCCTGGAGCTGGTGGCGA------ 352
Query 359 TCTACAACAAACCCACCCTCTCAGCCCTGCCCAGCCCTGTGGTGGCCTCAGGGGGGAATATGACCCTCCGATGT 432
Sbjct 353 -------------------------------------------------------------------------- 352
Query 433 GGCTCACAGAAGGGATATCACCATTTTGTTCTGATGAAGGAAGGAGAACACCAGCTCCCCCGGACCCTGGACTC 506
Sbjct 353 -------------------------------------------------------------------------- 352
Query 507 ACAGCAGCTCCACAGTGGGGGGTTCCAGGCCCTGTTCCCTGTGGGCCCCGTGAACCCCAGCCACAGGTGGAGGT 580
Sbjct 353 -------------------------------------------------------------------------- 352
Query 581 TCACATGCTATTACTATTATATGAACACCCCCCAGGTGTGGTCCCACCCCAGTGACCCCCTGGAGATTCTGCCC 654
Sbjct 353 -------------------------------------------------------------------------- 352
Query 655 TCAGGCGTGTCTAGGAAGCCCTCCCTCCTGACCCTGCAGGGCCCTGTCCTGGCCCCTGGGCAG--AGCCTGACC 726
||||||||||||||||||||||||||||||.||.|||||||.|||||.|||||| |.|.|| |||||||||
Sbjct 353 -CAGGCGTGTCTAGGAAGCCCTCCCTCCTGATCCCGCAGGGCTCTGTCGTGGCCC--GCGGAGGCAGCCTGACC 423
Query 727 CTCCAGTGTGGCTCTGATGTCGGCTACGACAGATTTGTTCTGTATAAGGAGGGGGAACGTGACTTCCTCCAGCG 800
||.||||||.||||||||||||||||.||||.|||.||||||||.|||||||||||||.||||.||.|||||.|
Sbjct 424 CTGCAGTGTCGCTCTGATGTCGGCTATGACATATTCGTTCTGTACAAGGAGGGGGAACATGACCTCGTCCAGGG 497
Query 801 CCCTGGCCAGCAGCCCCAGGCTGGGCTCTCCCAGGCCAACTTCACCCTGGGCCCTGTGAGCCGCTCCCACGGGG 874
|.||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 498 CTCTGGCCAGCAGCCCCAGGCTGGGCTCTCCCAGGCCAACTTCACCCTGGGCCCTGTGAGCCGCTCCCACGGGG 571
Query 875 GCCAGTACAGGTGCTATGGTGCACACAACCTCTCCTCCGA-GTGGTCGGCCCCCAGCGACCCCCTGAACATCCT 947
||||||||||.|||||.|||||||||||||||||| ||.| |||||||||||||||||||||||||.|||||||
Sbjct 572 GCCAGTACAGATGCTACGGTGCACACAACCTCTCC-CCTAGGTGGTCGGCCCCCAGCGACCCCCTGGACATCCT 644
Query 948 GATGGCAGGACAGATCTATGACA---CCGTCTCCCTGTCAGCACAGCCGGGCCCCACAGTGGCCTCAGGAGAGA 1018
|||.|||||||.||||..||||| ||| ||||.||.|..|||||||||||||..||||||||||||||||
Sbjct 645 GATCGCAGGACTGATCCCTGACATACCCG---CCCTCTCGGTGCAGCCGGGCCCCAAGGTGGCCTCAGGAGAGA 715
Query 1019 ACGTGACCCTGCTGTGTCAGTCATGGTGGCAGTTTGACACTTTCCTTCTGACCAAAGAAGGGGCAGCCCATCCC 1092
||||||||||||||||||||||||||...|||.|.|||||||||.||.|||||||.||.|||||||||||||||
Sbjct 716 ACGTGACCCTGCTGTGTCAGTCATGGCATCAGATAGACACTTTCTTTTTGACCAAGGAGGGGGCAGCCCATCCC 789
Query 1093 CCACTGCGTCTGAGATCAATGTACGGAG-CTCATAAGTACCAGGCTGAATTCCCCATGAGTCCTGTGACCTCAG 1165
||.|||.||||.|..||||.|||| .|| ||.|||...||||||||||||||.|||||||||||||||||||||
Sbjct 790 CCGCTGTGTCTAAAGTCAAAGTAC-CAGTCTTATAGACACCAGGCTGAATTCTCCATGAGTCCTGTGACCTCAG 862
Query 1166 CCCACGCGGGGACCTACAGGTGCTACGGCTCATACAGCTCCAACCCCCACCTGCTGTCTTTCCCCAGTGAGCCC 1239
||||.|..||.||||||.|.||||||.||.||..|||.|||.|||||.||||||||||...|||.|||.|.|||
Sbjct 863 CCCAGGGTGGAACCTACCGATGCTACAGCGCAATCAGGTCCTACCCCTACCTGCTGTCCAGCCCTAGTTACCCC 936
Query 1240 CTGGAACTCATGGTCTCAGGACACTCTGGAGGCT-CCAGCCTCCCACCCACAGG-GCCGCCCTCCACACC---- 1307
|.|||.|||.||||||||||||.|||||| ||.| ||||||||.||||.||||| .||.||| |||||||
Sbjct 937 CAGGAGCTCGTGGTCTCAGGACCCTCTGG-GGATCCCAGCCTCTCACCTACAGGCTCCACCC-CCACACCTGCA 1008
Query 1308 -----------------------------------------------TGGTCTGGGAAGATACCTGGAGGTTTT 1334
||||||||||||..||||||.||||.|
Sbjct 1009 GGCCCTGAGGACCAGCCCCTCACCCCCACGGGGTTGGATCCCCAGAGTGGTCTGGGAAGGCACCTGGGGGTTGT 1082
Query 1335 GATTGGGGTCTCGGTGGCCTTCGTCCTGCTGCTCTTCCTCCTCCTCTTCCTCCTCCTCCGACGTCAGCGTCACA 1408
||.|||||||||.||||||||||||||||||||.||||||||||||||||||||||||||||.||.||.|||.|
Sbjct 1083 GACTGGGGTCTCAGTGGCCTTCGTCCTGCTGCTGTTCCTCCTCCTCTTCCTCCTCCTCCGACATCGGCATCAGA 1156
Query 1409 GCAAACACAGGACATCTGACCAGAGAAAGACTGATTTCCAGCGTCCTGCAGGGGCTGCGGAGACAGAGCCCAAG 1482
||||||||||||||||.|.|| |||||.|.|||||||||||||||||||.|.|||||||||||
Sbjct 1157 GCAAACACAGGACATCGGCCC------------ATTTCTACCGTCCTGCAGGGGCTGCGGGGCCAGAGCCCAAG 1218
Query 1483 GACAGGGGCCTGCTGAGGAGGTCCAGCCCAGCTGCTGACGTCCAGGAAGAAAACCTCTATGCTGCCGTGAAGGA 1556
|||..||||||||.||.||||.|||||||||.|||||||.|||||||.||||..|||.||||||||||||||||
Sbjct 1219 GACCAGGGCCTGCAGAAGAGGGCCAGCCCAGTTGCTGACATCCAGGAGGAAATTCTCAATGCTGCCGTGAAGGA 1292
Query 1557 CACACAGTCTGAGGACAGGGTGGAGCTGGACAGTCAGAGCCCACACGATGAAGACCCCCAGGCAGTGACGTATG 1630
|||||||.|..|||||.||||||||.||| |||
Sbjct 1293 CACACAGCCCAAGGACGGGGTGGAGATGG------------------------------------------ATG 1324
Query 1631 CCCCGGTGAAACACTCCAGTCCTAGGAGAGAAATGGCCTCTCCTCCCTCCTCACTGTCTGGGGAATTCCTGGAC 1704
|.||
Sbjct 1325 CTCC---------------------------------------------------------------------- 1328
Query 1705 ACAAAGGACAGACAGGTGGAAGAGGACAGGCAGATGGACACTGAGGCTGCTGCATCTGAAGCCTCCCAGGATGT 1778
|||||||||||||||||||.||||||||||
Sbjct 1329 --------------------------------------------GGCTGCTGCATCTGAAGCCCCCCAGGATGT 1358
Query 1779 GACCTACGCCCAGCTGCACAGCTTGACCCTTAGACGGAAGGCAACTGAGCCTCCTCCATCCCAGGAAGGGGAAC 1852
||||||||||||||||||||||||||||||.||||||.|||||||||||||||||||||||||||||.||||||
Sbjct 1359 GACCTACGCCCAGCTGCACAGCTTGACCCTCAGACGGGAGGCAACTGAGCCTCCTCCATCCCAGGAAAGGGAAC 1432
Query 1853 CTCCAGCTGAGCCCAGCATCTACGCCACTCTGGCCATCCAC 1893
||||||||||.|||||||||||||||.|.||||||||||||
Sbjct 1433 CTCCAGCTGAACCCAGCATCTACGCCCCCCTGGCCATCCAC 1473