Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_11616
- Subject:
- NR_003090.3
- Aligned Length:
- 5724
- Identities:
- 170
- Gaps:
- 5533
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 AAACCCTCAGGGACCTGGTATAGACGCAGAATCTGTTTCACACAACAACTGCTATTTGAAGGAAAAAAAAAAAA 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 AGAAGCAAATGATACCAAGACAAGCTCATAACAGAGATCCAATCAGCAGATGTGTACGGATGAAAATACAGTGA 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 GATGAGTCAGAAACCGGCCAAGGAGGGTCCCAGACTCTCCAAAAACCAGAAGTACTCCGAACACTTCAGCATAC 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 ACTGCTGCCCGCCGTTCACCTTCCTCAATTCCAAGAAGGAGATAGTGGATCGGAAATACAGCATCTGTAAGAGC 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 GGCTGCTTCTACCAGAAGAAAGAGGAGGACTGGATCTGCTGCGCCTGCCAGAAGACCAGATTGAAAAGGAAGAT 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 CAGGCCAACCCCAAAGAAGAAGTGACCAAGGAGGAGTTTAAACTGAATGAACAACCTCGGCTCCTGGACTCATT 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 GCTTCACAACCCATCTACCCCTGGATGAAGTTATCTGGCTTCAAATATTATGCAGGGGCAAACACCTGCTGATG 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 TGGCAACTGCTGATGCTCATGGTCCCCATGGCATGGGGGCCTCAGGGCAGCCTGCCTGGAGTACTTTGAAGATG 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 TCATCCCATTGTCTTCTGACCTCTATAATTGCCACTGAGAGATCTGCTGTCAGTCTGCTTATCCTTCCACGGAC 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 TCAAGTTTCTTCAATCTGAAGATACATGTCTTTCTCCAGGGACATGTGGAAAAAAAAAAGATGTTATACAACCA 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 TCAAAGTGGCAAAAATAAAAAAAATCAAGTATTGGCAAAGATGTGGGGAAAATTCTCATAAGCTACTGATGAGA 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 ATTTATAAATTATTATGACACCTTTGGGTTGCAATCTGGGGATACTGGCAAAGCAGAAAATTGTACAACCTGTG 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 ATCAAGCAATAATAATTTTAGGCACCCATCCTAGAGAAAACTTGAATTCATAGAAAAAGTAGGTACACGTAAAT 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 CTGTTCAAGGAATCATTGTTTGGCATTGAAAATAGGAGAGAGATCATGAGAAATTACCAAAATGTCCACCAATA 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 GAATGAGTGAATCACCTGTGGTATATTTATAAATAAAAATATTAAATAGAAGGTAAAACAAATCAGACATACAC 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 ACATTAGATAGATAAATTTAGAGGACAAAATAAGGAACATGAAAAGCAAATAGTAGATGGCAAATGTAATATAA 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 TATACTATGCATAAATTTTAACAACACACAATATTATATTGCATATTGCCCAATAAGCAGAAGCCATAAGGTCT 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 CACACTTTTCTTATAATGCAATAGAATAAAAATGACAACAAAGTAAAAGGGTATCCCAAAAATAAAACTATCCT 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 TTTGGAAAAAAAAAGATTTAAAATAATTCCTGGTTTGAAGAAATAACAAATTAAAAGCTATATATAAACGGTTA 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 ACAATATTAGGTGGACATATTTGTTTGAAGAGATAGGTGAAAGATAGTTGAAAAGCCTGGGGGTATATTCAAGG 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 TTATATGTCTTAGAAAACAAAAATACTTGTTTGGGTTCAGTTTTGGATCTGGGCTTGTTCTTGTGGCTTCTGAT 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 GATTTCTGACTTGGGGAAAAATGGGGAAGAGTTGAAATACGTCCTTCCACCCAAACCTTTGTTTAGTAATAGGT 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 AGGAAAATGAAGAAGAAAATAGAATGTTGCAGAATGTGGAGGGATGTAAAATGGACAGTACTAGGGTAGAGGGG 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 AAGTCAGATTAGAGGAAAGAAAGAGCATCAGGAACAGTCTTGTGCTAGGAGCTGGTGTGGCCAAGCACAGTCGG 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 ATGCCCAAAGATCCAACAAGGCCATGGCTCTGTGTCCTTGAGTGGGCACAACCATTCCTAGCCAAGTTTAAGAG 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 GCAAGTAAAAATATAGGGGCAATGTCAGATGAAGTCTTGTTCAGGGTATGGGGCTAGGATGAGAGAGAATGCCA 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 CAGAGTATGAAGGAAGAGTGATAGATCCAGATGAGATACAGCTCAGAGTGCCACGCCCCCAGAAAGAGGAATCA 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 GGCAAGTACTGTCCCAAGGCAGCTGGAGGGTGAGGGCTGAGTGCCCTGGCTTCCTCACTTGGGGAGACCATGGG 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 TCTCTGTAGAAATTCCAATATAAAGGCAGGGAAATTTGACTGCATGGAGTCTTCAGGTAGAAATGTTTCTCTTG 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 CCTAAATTCAGGTGCTAAATAAACAACAAAATGGTAACCTCTACTATGAAGTGTTTCCAATGATGGGATATCTG 2220
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2221 AGGCCATTACATTCCTGGGAATAACATGGTGAGGTGCAGGGTGGTGGTGGTGGTGAAACATACGACAGACCACT 2294
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2295 GTAAGTGAGAACAAATTACTGGCCCAGCCCAACCCACACCAAATAAGAAATTTAATATCCCTTTGGCCTGTTTT 2368
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2369 AGATTTTGGCAAAGCCAGGCCCATAGTGCTTGCTGGGCTCTCTCTTCCACATCATCCAGAAGACACACATTTGC 2442
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2443 TATGGAATGATTGTGGAGGTGAGAGTATAGTGCATATTAATTCATGCAAAAAGTTAGATATTAGCCCAGAAATG 2516
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2517 TTAGTAACAAGAAACTACTGAATTCTCTGTTTGTCTGTTGTGGAAATAAAACCTTCTGGGGATGAATCAAAACT 2590
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2591 ATCTGACAATTACTTGAAATGGGTGAATAGCTAAATGTAATGTGCCTTGGATATTATAACTAAAAGGTGCTATA 2664
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2665 ATCCAGTTATATTTTTTATCTTTTAAGGATTGGTTCTGAGGAGCACTACCAGTAAATATTGCAAAAATTACATA 2738
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2739 AAGCTCCAAAAGCTACTCTGTGTAAACTTCTTGAGTGGGAATTCTCAACCATAATATCTGGAATATGACTGATA 2812
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2813 ATTCTGGATGTTAACTGATTTTATGTTCTGATGTTTTGACTGGTTTTGGGAAAAATTTTGGGAAAAAAGAGTTT 2886
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2887 TCCTCGTAAATACCCAACAACTGGGTCTCTGGGTAAAAAGGCCTAATTTATAGAGATTGCTAATTTCCATGGTG 2960
Query 1 --------------------------------------------------------ATGGAGTCTCACTC-TGT 17
|||||||.|||||| |||
Sbjct 2961 TAAATATTTCCACAATGCAGATTCCTTCCTTCCTTTTTTTTTTTTTTTTTTTTGAGATGGAGTTTCACTCTTGT 3034
Query 18 CACCCAGGCTGGAGTGCAGTGGCGTGATCTTGGCTCACTGCAACCTCTGCCTCCTGGGTTCAAGCAATTCTCCC 91
.||||||.||||||||||..||.|.||.|||||||||||||||.||...|||||.||||||||||.|||||||.
Sbjct 3035 TACCCAGACTGGAGTGCAAAGGTGCGACCTTGGCTCACTGCAATCTTCACCTCCCGGGTTCAAGCCATTCTCCT 3108
Query 92 ACCTCAGCCTCCCAAGTAGCTGGGATTACAGACGTGTGCC----ACCATACCTGGGTAATTTTTGCATTTTTAG 161
.|||||||||||||||||||||||||||||| ||||| |||||.|||||.||| |||||.||||||||
Sbjct 3109 GCCTCAGCCTCCCAAGTAGCTGGGATTACAG----GTGCCCACGACCATGCCTGGCTAA-TTTTGTATTTTTAG 3177
Query 162 TGGAG--AGGGAGTTTCACCATGTTGGCCAGGTTGGTCT----------------------------------- 198
|.||| ||||| ||||||||||||||||||.||||||
Sbjct 3178 TAGAGATAGGGA--TTCACCATGTTGGCCAGGCTGGTCTCAACCTCTGGACCTCAGGTGATCCACCCGCCTCGG 3249
Query 199 -------------------------------------------------------------------------- 198
Sbjct 3250 CCTCCTAAAGTGCTGGAGATTACAGGCATGAGCCACCACGCCCGGACCATGATGCAGATTTCAAGCTATGAACA 3323
Query 199 -------------------------------------------------------------------------- 198
Sbjct 3324 TGATTCTCTGGAGTTTACCATTTGTCTTTTAATTGGCAAATTTGATGCAGAATTGGGAAGAGAAGCACACAATT 3397
Query 199 -------------------------------------------------------------------------- 198
Sbjct 3398 GACTCTCGTCAGCTGGCACAAGCTGGTGCCAGTGCACCACTGTATATATCCATGGCCCTCTGTGAAGCTAGAGT 3471
Query 199 -------------------------------------------------------------------------- 198
Sbjct 3472 TTACTACTAAAATTTGTGCTCCATAAATATACAAAGGCACTAGTAAGAGAAAAAATATAAAGAGAATATAAACT 3545
Query 199 -------------------------------------------------------------------------- 198
Sbjct 3546 AAATTCAAATTAGGGAGCTCAAATGGAGAAAATTGACAGATAATATTTTTGAAACTTTGAAAAGTAGTATTTGT 3619
Query 199 -------------------------------------------------------------------------- 198
Sbjct 3620 CTAGATTCACCTTTTATTACCTTTTCCTTTTTTTCTTTTCCTTTTTTTTTTTTTTTTGAGACGGAGTTTCTCTC 3693
Query 199 -------------------------------------------------------------------------- 198
Sbjct 3694 TTGTTACCCAGGCTGGAGTGCAATGGCACGCAATCTCAGCTCATTGCAACCTCGGCTCACTGTAACCTTCACCT 3767
Query 199 -------------------------------------------------------------------------- 198
Sbjct 3768 TCCGTGTTCAAATGATTCTCCTGCCTCAGCCTTCCGAGTAGCTGGGATTACAGGCACCCACCACCATGCCCAGC 3841
Query 199 -------------------------------------------------------------------------- 198
Sbjct 3842 TAATTCTTTGTATTTTTAGTGGAGATGGGGTTTCACCATGTTGGCCAGGCTGGTCTTGAACCCCTGACCTCAGG 3915
Query 199 -------------------------------------------------------------------------- 198
Sbjct 3916 TGATCCACCCACCTGGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACCGCGCCCGGCCTGTTATTATCT 3989
Query 199 -------------------------------------------------------------------------- 198
Sbjct 3990 TTTATTAAGCAAACAGCGTATCTATGTATCATACTGAGTGTTCTGAGCTGTTAGTTTCTTTGGTGTTCATCTAG 4063
Query 199 -------------------------------------------------------------------------- 198
Sbjct 4064 ATGGAAGCTGGGGCTTCCTTCCTTTCAGATATTGGTGCTAACATGAAGCTGACCAAAGAATTGATGGGATCTGC 4137
Query 199 -------------------------------------------------------------------------- 198
Sbjct 4138 ACACTGTAAAGCCGGTTTCAGGATGGCTGAGCTGACGGTCAAGAAAGAAGAGAAGATATGAGCCGCCTGCATTT 4211
Query 199 -------------------------------------------------------------------------- 198
Sbjct 4212 TGGGGTGGTGGCAGTGAAATTTAGACTTGTGATTTGGTATGACAATATATGGCTTTTTGTGATTGTTAACATTA 4285
Query 199 -------------------------------------------------------------------------- 198
Sbjct 4286 ATGAAAACAAGAAAAATTAGTTGCTCAAAAGTTGAAAAATGGATTCATAAACTTTTTATTAGAGTAAGGCAAAA 4359
Query 199 -------------------------------------------------------------------------- 198
Sbjct 4360 GAACATATTAAAATAGAGGTAAATTAGAAATGTCAATAAGAACCCATGGACATTTTTTATAAGGAGACTTTATC 4433
Query 199 -------------------------------------------------------------------------- 198
Sbjct 4434 TGTTCTGTCCCTACAGTGATTTATGCTCTTGGATATTTTTGCTGTCATCCTGACAAATTCTAGTTGGAATATGG 4507
Query 199 -------------------------------------------------------------------------- 198
Sbjct 4508 AACAAGCTTATTTGTAGACCTAGTGCCTGTGGCTTCTAAAGCAATTTTCTGAAAAGAGAAACCACTGCCTGTTG 4581
Query 199 -------------------------------------------------------------------------- 198
Sbjct 4582 GAAGAATAGTTGATTCCATACCTCAAGCTAGGGAAAAAAAATCAGAATTAGTCTGTGAATTCTAGATGTTGAGA 4655
Query 199 -------------------------------------------------------------------------- 198
Sbjct 4656 GAAAGCAGGGTTTCATTAGGGCATCGGAGAGTCACAAGTCCATAGGATGCAAAAAGGAAGATGAAATAAAATTG 4729
Query 199 -------------------------------------------------------------------------- 198
Sbjct 4730 CCTGAAAAACGCACCTGAATTTCTGGCATTGTTTACTGAAAAGGCTGTGTATTGATGAACCCCAATTATGTGAG 4803
Query 199 -------------------------------------------------------------------------- 198
Sbjct 4804 GTCTACATTTAAGAGTTTATAATCAACAGTTTGAAAATGCAGGGTGTTGTTTCTTTCTATAAGGAGACAAAACA 4877
Query 199 -------------------------------------------------------------------------- 198
Sbjct 4878 GTCAGAAGGGAGTGTCACAGGACATTATCACAAAATCAAAGTTCTCCATGAAATGTGGTTCATTTGCTAGAAAA 4951
Query 199 -------------------------------------------------------------------------- 198
Sbjct 4952 TAATGCAAGCCTATTGGAGAGAATCAGGGCTTCTAGTGATGCTAGGGATGACCTTAAGCATTGTTTGTAAATCA 5025
Query 199 -------------------------------------------------------------------------- 198
Sbjct 5026 CACTTTTTCCTAGTCTTTCAGCAGCAGCTGCACAGAGTAGGCCTGCTTCTTCCCATGAAAGCCACACTGAGTTT 5099
Query 199 -------------------------------------------------------------------------- 198
Sbjct 5100 TATCAACTAGTAGTGTGTGGGCACTATTGCAAGTTATGTTGTGTTGTTTATGGCCATTTATCCAACAGTGCTTT 5173
Query 199 -------------------------------------------------------------------------- 198
Sbjct 5174 CCTCTGTGCGGGGCTCTGCAGCCTCGTTCTATGTTATTTTTATTACCACGTGTCTGTGCGCCTCAGGTGGCAAA 5247
Query 199 -------------------------------------------------------------------------- 198
Sbjct 5248 GCAGAATCAGCTTCTCTACCCTCAGCAGGGCTCACTATGACTCACTATAAGGGAAGAAAATCTTACAGATGTCA 5321
Query 199 -------------------------------------------------------------------------- 198
Sbjct 5322 GAAAATGTTAGGTAAGTGGACAGTGATAAACACAAAACAGCAAGTGGTCAGTATCAAAGAGAAAAACAGTATGT 5395
Query 199 -------------------------------------------------------------------------- 198
Sbjct 5396 TGGTGAAGGAGAAGTATCAAAGCTAGTTAAAAAAGTAACAGGAGAAATGTAAAGGGACAATACTCCACAAAAAT 5469
Query 199 -------------------------------------------------------------------------- 198
Sbjct 5470 TTAGATTGTAACTGAGCTTCTTCTCCTAAAGAGATTTAAAAATAAAGTATAGGAAATACATGAAGAAACAAAGT 5543
Query 199 -------------------------------------------------------------------------- 198
Sbjct 5544 AAAATGCCAAGGTGTAAGTTTGACCATGAATATCTAGGGAAAAACATACTTGCACTAAAACAACCAAATATGCA 5617
Query 199 -------------------------------------------------------------------------- 198
Sbjct 5618 AAAATCAAGTGGAAAAACAGGTCAAAATAATGCCAGTTGATGTCTGTAAGAACTAAATGTATAATAAAATGAGC 5691
Query 199 -------------------------- 198
Sbjct 5692 AAAAAAAATGGCCAGTTTAACACCAA 5717
