Nucleotide Global Alignment

Description

Query:
ccsbBroad304_11616
Subject:
NR_003090.3
Aligned Length:
5724
Identities:
170
Gaps:
5533

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  AAACCCTCAGGGACCTGGTATAGACGCAGAATCTGTTTCACACAACAACTGCTATTTGAAGGAAAAAAAAAAAA  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  AGAAGCAAATGATACCAAGACAAGCTCATAACAGAGATCCAATCAGCAGATGTGTACGGATGAAAATACAGTGA  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  GATGAGTCAGAAACCGGCCAAGGAGGGTCCCAGACTCTCCAAAAACCAGAAGTACTCCGAACACTTCAGCATAC  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  ACTGCTGCCCGCCGTTCACCTTCCTCAATTCCAAGAAGGAGATAGTGGATCGGAAATACAGCATCTGTAAGAGC  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  GGCTGCTTCTACCAGAAGAAAGAGGAGGACTGGATCTGCTGCGCCTGCCAGAAGACCAGATTGAAAAGGAAGAT  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  CAGGCCAACCCCAAAGAAGAAGTGACCAAGGAGGAGTTTAAACTGAATGAACAACCTCGGCTCCTGGACTCATT  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  GCTTCACAACCCATCTACCCCTGGATGAAGTTATCTGGCTTCAAATATTATGCAGGGGCAAACACCTGCTGATG  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  TGGCAACTGCTGATGCTCATGGTCCCCATGGCATGGGGGCCTCAGGGCAGCCTGCCTGGAGTACTTTGAAGATG  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  TCATCCCATTGTCTTCTGACCTCTATAATTGCCACTGAGAGATCTGCTGTCAGTCTGCTTATCCTTCCACGGAC  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  TCAAGTTTCTTCAATCTGAAGATACATGTCTTTCTCCAGGGACATGTGGAAAAAAAAAAGATGTTATACAACCA  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  TCAAAGTGGCAAAAATAAAAAAAATCAAGTATTGGCAAAGATGTGGGGAAAATTCTCATAAGCTACTGATGAGA  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  ATTTATAAATTATTATGACACCTTTGGGTTGCAATCTGGGGATACTGGCAAAGCAGAAAATTGTACAACCTGTG  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  ATCAAGCAATAATAATTTTAGGCACCCATCCTAGAGAAAACTTGAATTCATAGAAAAAGTAGGTACACGTAAAT  962

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  963  CTGTTCAAGGAATCATTGTTTGGCATTGAAAATAGGAGAGAGATCATGAGAAATTACCAAAATGTCCACCAATA  1036

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1037  GAATGAGTGAATCACCTGTGGTATATTTATAAATAAAAATATTAAATAGAAGGTAAAACAAATCAGACATACAC  1110

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1111  ACATTAGATAGATAAATTTAGAGGACAAAATAAGGAACATGAAAAGCAAATAGTAGATGGCAAATGTAATATAA  1184

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1185  TATACTATGCATAAATTTTAACAACACACAATATTATATTGCATATTGCCCAATAAGCAGAAGCCATAAGGTCT  1258

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1259  CACACTTTTCTTATAATGCAATAGAATAAAAATGACAACAAAGTAAAAGGGTATCCCAAAAATAAAACTATCCT  1332

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1333  TTTGGAAAAAAAAAGATTTAAAATAATTCCTGGTTTGAAGAAATAACAAATTAAAAGCTATATATAAACGGTTA  1406

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1407  ACAATATTAGGTGGACATATTTGTTTGAAGAGATAGGTGAAAGATAGTTGAAAAGCCTGGGGGTATATTCAAGG  1480

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1481  TTATATGTCTTAGAAAACAAAAATACTTGTTTGGGTTCAGTTTTGGATCTGGGCTTGTTCTTGTGGCTTCTGAT  1554

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1555  GATTTCTGACTTGGGGAAAAATGGGGAAGAGTTGAAATACGTCCTTCCACCCAAACCTTTGTTTAGTAATAGGT  1628

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1629  AGGAAAATGAAGAAGAAAATAGAATGTTGCAGAATGTGGAGGGATGTAAAATGGACAGTACTAGGGTAGAGGGG  1702

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1703  AAGTCAGATTAGAGGAAAGAAAGAGCATCAGGAACAGTCTTGTGCTAGGAGCTGGTGTGGCCAAGCACAGTCGG  1776

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1777  ATGCCCAAAGATCCAACAAGGCCATGGCTCTGTGTCCTTGAGTGGGCACAACCATTCCTAGCCAAGTTTAAGAG  1850

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1851  GCAAGTAAAAATATAGGGGCAATGTCAGATGAAGTCTTGTTCAGGGTATGGGGCTAGGATGAGAGAGAATGCCA  1924

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1925  CAGAGTATGAAGGAAGAGTGATAGATCCAGATGAGATACAGCTCAGAGTGCCACGCCCCCAGAAAGAGGAATCA  1998

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1999  GGCAAGTACTGTCCCAAGGCAGCTGGAGGGTGAGGGCTGAGTGCCCTGGCTTCCTCACTTGGGGAGACCATGGG  2072

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2073  TCTCTGTAGAAATTCCAATATAAAGGCAGGGAAATTTGACTGCATGGAGTCTTCAGGTAGAAATGTTTCTCTTG  2146

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2147  CCTAAATTCAGGTGCTAAATAAACAACAAAATGGTAACCTCTACTATGAAGTGTTTCCAATGATGGGATATCTG  2220

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2221  AGGCCATTACATTCCTGGGAATAACATGGTGAGGTGCAGGGTGGTGGTGGTGGTGAAACATACGACAGACCACT  2294

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2295  GTAAGTGAGAACAAATTACTGGCCCAGCCCAACCCACACCAAATAAGAAATTTAATATCCCTTTGGCCTGTTTT  2368

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2369  AGATTTTGGCAAAGCCAGGCCCATAGTGCTTGCTGGGCTCTCTCTTCCACATCATCCAGAAGACACACATTTGC  2442

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2443  TATGGAATGATTGTGGAGGTGAGAGTATAGTGCATATTAATTCATGCAAAAAGTTAGATATTAGCCCAGAAATG  2516

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2517  TTAGTAACAAGAAACTACTGAATTCTCTGTTTGTCTGTTGTGGAAATAAAACCTTCTGGGGATGAATCAAAACT  2590

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2591  ATCTGACAATTACTTGAAATGGGTGAATAGCTAAATGTAATGTGCCTTGGATATTATAACTAAAAGGTGCTATA  2664

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2665  ATCCAGTTATATTTTTTATCTTTTAAGGATTGGTTCTGAGGAGCACTACCAGTAAATATTGCAAAAATTACATA  2738

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2739  AAGCTCCAAAAGCTACTCTGTGTAAACTTCTTGAGTGGGAATTCTCAACCATAATATCTGGAATATGACTGATA  2812

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2813  ATTCTGGATGTTAACTGATTTTATGTTCTGATGTTTTGACTGGTTTTGGGAAAAATTTTGGGAAAAAAGAGTTT  2886

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2887  TCCTCGTAAATACCCAACAACTGGGTCTCTGGGTAAAAAGGCCTAATTTATAGAGATTGCTAATTTCCATGGTG  2960

Query    1  --------------------------------------------------------ATGGAGTCTCACTC-TGT  17
                                                                    |||||||.|||||| |||
Sbjct 2961  TAAATATTTCCACAATGCAGATTCCTTCCTTCCTTTTTTTTTTTTTTTTTTTTGAGATGGAGTTTCACTCTTGT  3034

Query   18  CACCCAGGCTGGAGTGCAGTGGCGTGATCTTGGCTCACTGCAACCTCTGCCTCCTGGGTTCAAGCAATTCTCCC  91
            .||||||.||||||||||..||.|.||.|||||||||||||||.||...|||||.||||||||||.|||||||.
Sbjct 3035  TACCCAGACTGGAGTGCAAAGGTGCGACCTTGGCTCACTGCAATCTTCACCTCCCGGGTTCAAGCCATTCTCCT  3108

Query   92  ACCTCAGCCTCCCAAGTAGCTGGGATTACAGACGTGTGCC----ACCATACCTGGGTAATTTTTGCATTTTTAG  161
            .||||||||||||||||||||||||||||||    |||||    |||||.|||||.||| |||||.||||||||
Sbjct 3109  GCCTCAGCCTCCCAAGTAGCTGGGATTACAG----GTGCCCACGACCATGCCTGGCTAA-TTTTGTATTTTTAG  3177

Query  162  TGGAG--AGGGAGTTTCACCATGTTGGCCAGGTTGGTCT-----------------------------------  198
            |.|||  |||||  ||||||||||||||||||.||||||                                   
Sbjct 3178  TAGAGATAGGGA--TTCACCATGTTGGCCAGGCTGGTCTCAACCTCTGGACCTCAGGTGATCCACCCGCCTCGG  3249

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 3250  CCTCCTAAAGTGCTGGAGATTACAGGCATGAGCCACCACGCCCGGACCATGATGCAGATTTCAAGCTATGAACA  3323

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 3324  TGATTCTCTGGAGTTTACCATTTGTCTTTTAATTGGCAAATTTGATGCAGAATTGGGAAGAGAAGCACACAATT  3397

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 3398  GACTCTCGTCAGCTGGCACAAGCTGGTGCCAGTGCACCACTGTATATATCCATGGCCCTCTGTGAAGCTAGAGT  3471

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 3472  TTACTACTAAAATTTGTGCTCCATAAATATACAAAGGCACTAGTAAGAGAAAAAATATAAAGAGAATATAAACT  3545

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 3546  AAATTCAAATTAGGGAGCTCAAATGGAGAAAATTGACAGATAATATTTTTGAAACTTTGAAAAGTAGTATTTGT  3619

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 3620  CTAGATTCACCTTTTATTACCTTTTCCTTTTTTTCTTTTCCTTTTTTTTTTTTTTTTGAGACGGAGTTTCTCTC  3693

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 3694  TTGTTACCCAGGCTGGAGTGCAATGGCACGCAATCTCAGCTCATTGCAACCTCGGCTCACTGTAACCTTCACCT  3767

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 3768  TCCGTGTTCAAATGATTCTCCTGCCTCAGCCTTCCGAGTAGCTGGGATTACAGGCACCCACCACCATGCCCAGC  3841

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 3842  TAATTCTTTGTATTTTTAGTGGAGATGGGGTTTCACCATGTTGGCCAGGCTGGTCTTGAACCCCTGACCTCAGG  3915

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 3916  TGATCCACCCACCTGGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACCGCGCCCGGCCTGTTATTATCT  3989

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 3990  TTTATTAAGCAAACAGCGTATCTATGTATCATACTGAGTGTTCTGAGCTGTTAGTTTCTTTGGTGTTCATCTAG  4063

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 4064  ATGGAAGCTGGGGCTTCCTTCCTTTCAGATATTGGTGCTAACATGAAGCTGACCAAAGAATTGATGGGATCTGC  4137

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 4138  ACACTGTAAAGCCGGTTTCAGGATGGCTGAGCTGACGGTCAAGAAAGAAGAGAAGATATGAGCCGCCTGCATTT  4211

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 4212  TGGGGTGGTGGCAGTGAAATTTAGACTTGTGATTTGGTATGACAATATATGGCTTTTTGTGATTGTTAACATTA  4285

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 4286  ATGAAAACAAGAAAAATTAGTTGCTCAAAAGTTGAAAAATGGATTCATAAACTTTTTATTAGAGTAAGGCAAAA  4359

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 4360  GAACATATTAAAATAGAGGTAAATTAGAAATGTCAATAAGAACCCATGGACATTTTTTATAAGGAGACTTTATC  4433

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 4434  TGTTCTGTCCCTACAGTGATTTATGCTCTTGGATATTTTTGCTGTCATCCTGACAAATTCTAGTTGGAATATGG  4507

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 4508  AACAAGCTTATTTGTAGACCTAGTGCCTGTGGCTTCTAAAGCAATTTTCTGAAAAGAGAAACCACTGCCTGTTG  4581

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 4582  GAAGAATAGTTGATTCCATACCTCAAGCTAGGGAAAAAAAATCAGAATTAGTCTGTGAATTCTAGATGTTGAGA  4655

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 4656  GAAAGCAGGGTTTCATTAGGGCATCGGAGAGTCACAAGTCCATAGGATGCAAAAAGGAAGATGAAATAAAATTG  4729

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 4730  CCTGAAAAACGCACCTGAATTTCTGGCATTGTTTACTGAAAAGGCTGTGTATTGATGAACCCCAATTATGTGAG  4803

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 4804  GTCTACATTTAAGAGTTTATAATCAACAGTTTGAAAATGCAGGGTGTTGTTTCTTTCTATAAGGAGACAAAACA  4877

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 4878  GTCAGAAGGGAGTGTCACAGGACATTATCACAAAATCAAAGTTCTCCATGAAATGTGGTTCATTTGCTAGAAAA  4951

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 4952  TAATGCAAGCCTATTGGAGAGAATCAGGGCTTCTAGTGATGCTAGGGATGACCTTAAGCATTGTTTGTAAATCA  5025

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 5026  CACTTTTTCCTAGTCTTTCAGCAGCAGCTGCACAGAGTAGGCCTGCTTCTTCCCATGAAAGCCACACTGAGTTT  5099

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 5100  TATCAACTAGTAGTGTGTGGGCACTATTGCAAGTTATGTTGTGTTGTTTATGGCCATTTATCCAACAGTGCTTT  5173

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 5174  CCTCTGTGCGGGGCTCTGCAGCCTCGTTCTATGTTATTTTTATTACCACGTGTCTGTGCGCCTCAGGTGGCAAA  5247

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 5248  GCAGAATCAGCTTCTCTACCCTCAGCAGGGCTCACTATGACTCACTATAAGGGAAGAAAATCTTACAGATGTCA  5321

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 5322  GAAAATGTTAGGTAAGTGGACAGTGATAAACACAAAACAGCAAGTGGTCAGTATCAAAGAGAAAAACAGTATGT  5395

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 5396  TGGTGAAGGAGAAGTATCAAAGCTAGTTAAAAAAGTAACAGGAGAAATGTAAAGGGACAATACTCCACAAAAAT  5469

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 5470  TTAGATTGTAACTGAGCTTCTTCTCCTAAAGAGATTTAAAAATAAAGTATAGGAAATACATGAAGAAACAAAGT  5543

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 5544  AAAATGCCAAGGTGTAAGTTTGACCATGAATATCTAGGGAAAAACATACTTGCACTAAAACAACCAAATATGCA  5617

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 5618  AAAATCAAGTGGAAAAACAGGTCAAAATAATGCCAGTTGATGTCTGTAAGAACTAAATGTATAATAAAATGAGC  5691

Query  199  --------------------------  198
                                      
Sbjct 5692  AAAAAAAATGGCCAGTTTAACACCAA  5717

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