Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_11616
- Subject:
- NR_038444.1
- Aligned Length:
- 4266
- Identities:
- 170
- Gaps:
- 4072
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GACTCTGGCCGCGGCGATTCAATATATCCGGAAGCAACTGTCATGGCTGCTGTCAGTGAGGGCCCGTAATGGAG 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 ATCGAGTCAAGGGTTGCCCAGGGACACTTAAGAGCCTTCGGCTTCAAGGAGGCCTCTCAAAGGACAAAGGATGA 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 GACTGCCTGGCGGCAGAGTGCCCCCCACAATCGTAGGAACTGTGTCGCCGCGCTTCCCGTTAACTTGCCGCTAA 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 GTTTTTCTAGAAAAGTCGCCCTTCTTGCCAGGGGTGTCCTATAGACTTTGTCATGGAGTGAAACAGAAACAAAT 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 AATGGCCTGTCCAGAAGACAGCCAAATACATCCTTCAAACAGACTTCACTGCAGGAGACAGAGTGGATTCATCC 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 TGTATTCTCCATGTAGACTTCCATCTTCATGAGTACTCCAAGAAGATGGTTCAGTTGACTATTGCAAAGGATGA 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 AAGCATGGGTCCCTGAGAATTTCATTACTTGCAACCTGAATGGAAAAATCACTTGAAAGCATCATGTGTGAACG 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 CTTTGGATACAAAAGAGATCAATAGAGTTGGCCTGGAACAAGAGATGCCCTTGAATGCAAGTTGTAACAACTGA 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 GAGAAATTGCCCAGACACTGCAACGGGAGTTGCCAACAAAGTAACAGAGTCAGAGAAGAGCTGAGTCTTGGGAA 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 TGAAAAAGTGATGAGGGGATGACTTCCACAGTGGGTATCCGGTCATTTGGGCTGCTGCTCTGCCCTCATCAAAG 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 TGATTTCCACTCTAAGCCTTTGCTAATTTCACAACAGGAAAGCATGCAAGAAATTCGAGAACAAAACAAATCTA 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 CACGCAGAGCCCAGCATCTTCAAGCAAACACCCTGAGGTACAGACCCGAGGCTAGATGAGTCCGGACTGCAGAT 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 GAGGCAGCTGCCTCTTAAACTGCAAGGGGACTGAAAAAGTCATTTGCCTCTAAAAAAACCAACTCTGAATACAA 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 ATTGATAATGAATATTCATGAGCCCCTCCAGCTTGCTCTAGAGCCACCCTTGACTGCAACCCTGGACTCTGCTT 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 CCTAAAAAGTTTCCCAAAGCTCTTTCTCTGCCTCCTCTCAGAAGGAAGAGGGTGGGAAAGTTCATTCAGGGCTT 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 TTTGCCTCCAGCTTTCAAGTACTTGCTTTTTGGTCTGGGCTTTTATTTTTCCTTCTATTTTTTTTTTCTTAAGG 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 ATTCAGATCAAATCAATTTTGGTCTTACCCTTTGTATCTTCCATAAGTAGCAGCTTTTGTTTTCCTCCTCTTTC 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 CTCGTCTTTCCCCCCCCCAGCCTCTGCTTGCTGTGGTCCGTCTCCGTGAGAGAGGTCCTCAAGGAAACAGAGAT 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 ATAACAGACCCTTGGGCTCGTGGGAGGGGCTAAATTAGCCGGCCCCGTTTCGGAAGGAACCTCAAACCCTGTCT 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 TTTTCATTGACTAGAAAGGACAGATTGACTGAGGAGTCCAGCAGCTCATTTTCCTAAAGTTACTCGAAGCCTTT 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 TCCAGGTTGTAATTTTTTGCATCCTTGAAGCAATGTATATTCAAATCTCTCTCTCTTTCTCCCTTCTTCCCTCT 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 CTCCCTTACTCCCTCCCTCTTCATCTCTCTCTCCCTCTCTTCGTTATAGAAATCCCTTTTTCTCCCTTGAAAAA 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 GTCATCTCAGCTGCAAGCAAAAAAAGCTATTCCTTACTGCAATTATGAAGCTAGATAATAAGAAAGTTGTTACC 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 TTGAAACCCGCTCGAAAAACTGAAAGTCAAGAACAGTTCTTCCCTCCCCATAAAGCCTCTGGTCCCATGACCAG 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 CAATCCTTTCTCAAGGCTCATTAGAGCAAAGAGCAACAGGTGACCCAAGCGATGAGTTTCCTGCAGGAGACGCT 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 GCGTTATTGGTTGGAAGGCTGGGTGGAACCACAGAGGAGCTGCTCAATGGGAACCGCTGCCTGGCTATGAATTG 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 ATGAAAGTCATCCACCATTTCCCAACTTTGACTTCCTACCTTTGAAGTCTAATGAGCATGAATTACCACATCCA 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 GACCGTCAAGATTACCCCAATGTAGATGAGAGCCTGACCAAATTATTTTTAAACTGTGTAACAAAATTATTTTG 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 AAATCAAAACAAGGGCTAATCCTTTGAAAGGAAGGTAAGTCCTCAAGTCCCAAGGCGACTTGGCAGCTTCTCCC 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 TCCACAAGGCTGTTGCAAACCTTAGCATTTCAGGTCTGAAAGATACCTCAGACATTGAGTCTAAAAGAGGTTAG 2220
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2221 AGATGTGGAGAGGTTAAGCCACCTGCTCATGCTCACATACATGGTCTCTCTTATTTGCTACCATGTTCCCCAGC 2294
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2295 ACCTAATACAGTTTCTCTCACAGCATGGGCTCTCAATAAATATTTGATGAATGGTTGAAAAAAATGAATGAATT 2368
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2369 GCAGCAAAGCAGAAATGTAGATCTGTTTTCCTGTTTCCTAGTTCTTGATTTTTCTACATTGCTTGTCTGGCATG 2442
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2443 TAAATTTGTATCTAAAGCCAGTTATACCATATAAATCATTAAATTTGTGAGCCCGAAGGACTGTTTTGACTCTA 2516
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2517 TGTAGAAACTATATTCTCCAGCGAGCTTTCAGTCATACTTTAATAAGGACAAAGGATAACCTTTTAGTTTAGGC 2590
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2591 ATCTCTGTTACTTTGCACGGTGCCACATGGTATATACTCAATACATTTTTTATACTTTAATAAATTTGGAGCTG 2664
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2665 TTTAACAATACTTTATTTCTGAAATGCTTTATAGTTATAGGATTTTGCATGTATGATAACAACTAATTACACTG 2738
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2739 AATGAAAGACTCAATGGATGTCTTCTCCCGAGTCAGTTTAGACTACATCTCTAATAATGAATATTGGTCTGATA 2812
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2813 TTCATCCTGTTATGATAAAACTGGTTTTTGGTGATATGATGGGATTTTTTGTAAAAACCAACAATTGGTTTATG 2886
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2887 ACTGCCTTTGTACTATTGTTTTGGAGAGAAATTTGAAAAGAGCATGTCCACAAAATAGTGTGCGAATTACAGAA 2960
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2961 TGGAAACCAAAACATCAAAGCTAGAAAGAGAAAAGAATGATCAAAGGGAAGATCCAGAGTGGCTGAGGGGTAGG 3034
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3035 CAGGAGAAACAGACAAACAAGTACCTGAGCTTGTCAATGAGAGACACACTTTGGTGGGTGCTGTGGCAACGGTT 3108
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3109 CTCTACTTTATTACATTAGGATATTAGGTTCTTTTTTTTTTTTTTTTTTTGAGACAAGAGTTTTACTCTTGTCT 3182
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3183 CCCAGGCTGGAGTGCAATGGAGCCATCTCAGCTTACTGCACCCTCTGCCTCCCGGGTTCAAGTGATTCTCCTGC 3256
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3257 CTCTGCCTCCAAGTAGCTGGGATTACAGGCGCCCGCCACCTTGCCCAGCTAATTTGTGTATTTTTAGTAGAGAT 3330
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3331 GGGGTTTCACCATGTTGGTCAGGCTGGTCTCGAACTCCTGACCTCAGGTGATCCGCCCGCCTCAGCCTCCCAAA 3404
Query 1 -----------------------------------------------------------------------ATG 3
|..
Sbjct 3405 GTGCTGGGATTACAGGCGTGAGCCACCATGCCTGGCCTATTTTACTACGTTCTTACATTCTTTTTTTTGAGACA 3478
Query 4 GAGTCTCACTCTGTCACCCAGGCTGGAGTGCAGTGGCGTGATCTTGGCTCACTGCAACCTCTGCCTCCTGGGTT 77
|||.||||||||||||.|||||||||||||||||||||||||||||||||||||||||||||||||||..||||
Sbjct 3479 GAGCCTCACTCTGTCATCCAGGCTGGAGTGCAGTGGCGTGATCTTGGCTCACTGCAACCTCTGCCTCCCAGGTT 3552
Query 78 CAAGCAATTCTCCCACCTCAGCCTCCCAAGTAGCTGGGATTACAGACGTGTGC-CACCA-TA--CCTGGGTAAT 147
||||..|||||....||||||||||||..|||.|||||||||.||| ||| ||||| || |||||.||||
Sbjct 3553 CAAGTGATTCTTGTGCCTCAGCCTCCCGCGTAACTGGGATTATAGA----TGCGCACCACTAAGCCTGGCTAAT 3622
Query 148 TTTTGCATTTTTAGTGGAGAGGGAGTTTCACCATGTTGGCCAGGTTGGTCT----------------------- 198
|||||.|||||||||.||||..|.||||||||||||||.|||||.||||||
Sbjct 3623 TTTTGTATTTTTAGTAGAGATTGGGTTTCACCATGTTGTCCAGGCTGGTCTCAAACTCCTGGCCTCAAGTGATC 3696
Query 199 -------------------------------------------------------------------------- 198
Sbjct 3697 CGCTTGCCTTGGCCTCCCAAAGTGCTAGGATTACAGGTGTGAGCCACAGTGCCTAGCCACAGTTCTCTATTTTA 3770
Query 199 -------------------------------------------------------------------------- 198
Sbjct 3771 AACAAAATTAAAATTCAAGGTCACTTCAGTCATGTTGTATCAGACGTTGTCGACAAAAGGTTACTTTGACAATT 3844
Query 199 -------------------------------------------------------------------------- 198
Sbjct 3845 GTCTCATTCTCTTTACATTTCATCAGGGAGAGAAAGAGTTAGTAAAAAGTAAATTGTTCTAGTACCCAACTTCT 3918
Query 199 -------------------------------------------------------------------------- 198
Sbjct 3919 GGTTTAACCAGGAGAGGTAAAATCTCATTATAGTAACTAGCACTTCATAAATATTTGAAGTTCATCCAAACTGA 3992
Query 199 -------------------------------------------------------------------------- 198
Sbjct 3993 ATATGGAGTAATAGAAACATAGTTTTAACCCCTAATTCATATTACATGAGCCTTTTGACAACATTTAATGCTTT 4066
Query 199 -------------------------------------------------------------------------- 198
Sbjct 4067 TTATGGTAATATGCTCTGTGCTACAATTTAATCACGTTGTCCAGGTTCGCACCCTCCTCAGCATCATGAAAATA 4140
Query 199 -------------------------------------------------------------------------- 198
Sbjct 4141 CTATGGTTAAGTATATATTATCACCAATTCATACAAGAATAATTATAAAAGAGATGGGAGTTTGTGTGTATCTT 4214
Query 199 ------------------------------------------------ 198
Sbjct 4215 TCTAAAGGCCTCAGAATTTATCTTAAAAAATAAATCGTCTTTCTCAAC 4262
