Nucleotide Global Alignment

Description

Query:
ccsbBroad304_11616
Subject:
NR_039997.1
Aligned Length:
1492
Identities:
169
Gaps:
1302

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  CGGCCTCCTCGCTTCTTAAAATGTCTGAGCTCTACGAAGTGGAACTGTTAGCCCTCCGTTTATTGCCTTACTTC  74

Query    1  ---------------------------------------------------------------------ATGGA  5
                                                                                 |.|||
Sbjct   75  ACACTGAAATAAGCCAACGTTTATTTTATTTTATTTATTTTATTATTTATTTTATTATTTTTTTTCGAGACGGA  148

Query    6  GTCTCACTCTGTCACCCAGGCTGGAGTGCAGTGGCGTGATCTTGGCTCACTGCAACCTCTGCCTCCTGGGTTCA  79
            |||||.||||||  |||||||||||||||.||||||.|||||.|.||||||||||||||.|||||| |.|||||
Sbjct  149  GTCTCGCTCTGT--CCCAGGCTGGAGTGCCGTGGCGGGATCTCGACTCACTGCAACCTCCGCCTCC-GTGTTCA  219

Query   80  AGCAATTCTCCCACCTCAGCCTCCCAAGTAGCTGGGATTACAGACGTG--TGCCACCATACCTGGGTAATTTTT  151
            |||.|||||   |||||||||||||.|||||||||||||||||  |||  .|||||||..||.||.||||||||
Sbjct  220  AGCTATTCT---ACCTCAGCCTCCCGAGTAGCTGGGATTACAG--GTGCCCGCCACCACGCCCGGCTAATTTTT  288

Query  152  GCATTTTTAGTGGAGAGGGAGTTTCACCATGTTGGCCAGGTTGGTCT---------------------------  198
            |.|||||||||.||||.||.||||||||||||||||||||.||.|||                           
Sbjct  289  GTATTTTTAGTAGAGATGGGGTTTCACCATGTTGGCCAGGCTGATCTCGAACTGCTGACCTTGTGATCCTCCCG  362

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct  363  CCTCAGCCTCCCAAAGTGTTGGGATTACAGGCGTGAGCCACCGCGCCCGGCCCCCAACGTTTCTTTTTAAGCCT  436

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct  437  GTCATATCTCACATTAAATGTGTAAGTCTCTGAACTGTAGGGCTTTGAACAAAGGAAAGTTCCATGAGAATACT  510

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct  511  ATATGATGCCAATTTCTACTGTTAGGAACGCGATAACAGAGTGCAGTGGGGGAGAAAATACCGTCCTCAAGATC  584

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct  585  TGAGAAACTGGAGAGGAAAAGTCACAGGACAACCAACTTCTCTATGACATAGCCCAGCATCTGAGGAAAGTCCT  658

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct  659  GCAATAGTGGAGGTGGAGCAGAGGGTATGAGCTGGGAAGCAAATGGAGCAGGAGCTGGAGGCTGCCCCATCCAC  732

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct  733  TCCAAGCCAGAGAACAAGCAGAGGCTGCCACAGGAGATCCTGGGCAAGTAATCAGCCACAGCATCTAGATTAGC  806

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct  807  ATGAAGGAAACACTGGCCAAATTAAAAGATGAAACTTCCAAAAGAGTCTCGATCTATTGCCCAGGCTGCAGTGC  880

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct  881  AAAGGTGCAGTCTCGGCTCACTGCAACATCCACCTTCCGGGTTCAAGCAATTCTCGTGCCTCAGCCTCGCGAAT  954

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct  955  AGCTGGGATTACAGTGCAAAGGGGAAGAGTCAGAAGGTGAATAAATACTCACAGCCGAAGCTCTTCAAAAGACT  1028

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 1029  TCACCGAGTACAGAGGGGAGTTTGGATCCCGCTGCAGGACTTCCACTTGGTTTGTGTTATCAACAAGGTTGCTT  1102

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 1103  CTGATCAGCTTGTTGAGTAAGGACTGGGCAGCTCTGTCCTCTGTCAGGAAAAAGAAAGCAAAGAATTTTAAAAA  1176

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 1177  GTCCTTGAAACCTACCAGGCGTTTACTCTAATTCAACTGCCATTTGTATTTTAAATAATAATGTACTGAACATT  1250

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 1251  CAAATTCAAGGTACGTCATAGTTTTGACTTATAAATTAAAATAGTTTTATTAAAGAAAAAAGTTATGATACATC  1324

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 1325  ACCCATTTAGGCCTCATATTCTTTTCCAGACTCTATTCTAACAGCCCTCTTTTCCTGCAGTTATCTATTCCTCC  1398

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 1399  TATCCAGACCCACATATTTACTCCCCAATTTGTACTATATATAAACCTAAAGTAATTAATGTAGCAATCACAAA  1472

Query  199  ------------  198
                        
Sbjct 1473  AAAAAAAAAAAA  1484

GPP Web Portal Terms of Service

Effective Date: December 8, 2025
By using this site, you agree to our terms and conditions below.

Overview of Terms

The data made available on this website were generated for research purposes and are not intended for clinical or commercial uses. Commercial use (or other use for profit-making purposes) of the GPP Web Portal and its tools, is not permitted under these terms and may require a separate license agreement from Broad or its contributors. For more information, please contact partnering@broadinstitute.org.

The original data may be subject to rights claimed by third parties, including but not limited to, patent, copyright, other intellectual property rights, biodiversity-related access and benefit-sharing rights. It is the responsibility of users of Broad Institute services to ensure that their use of the data does not infringe any of the rights of such third parties.

Any questions or comments concerning these Terms of Use can be addressed to: legal@broadinstitute.org.

By accessing and viewing this GPP Web Portal, you agree to the following terms and conditions:

Attribution

You agree to acknowledge the Broad Institute (e.g., in publications, services or products) for any of your use of its online services, databases or software in accordance with good scientific practice. You agree to use the acknowledgment wording provided for the relevant tools as indicated on the FAQ for each tool.

Updating the Terms of Use

We reserve the right to update these Terms of Use at any time. When alterations are inevitable, we will attempt to give reasonable notice of any changes by placing a notice on our website, but you may wish to check each time you use the website. The date of the most recent revision will appear on this, the "GPP Web Portal Terms of Use" page. If you do not agree to these changes, please do not continue to use our online services. We will also make available an archived copy of the previous Terms of Use for comparison.

Indemnification and Disclaimer of Warranties

You are using this GPP Web Portal at your own risk, and you hereby agree to hold Broad and its contributors and their trustees, directors, officers, employees, and affiliated investigators harmless for any third party claims which may arise from your use of the GPP Web Portal, the tools available therein, or any portion thereof. Further, you agree to indemnify Broad, its contributors, and its and their trustees, directors, officers, employees, affiliated investigators, students, and affiliates for any loss, costs, claims, damages, or other liabilities arising from any unpermitted commercial or profit-making use you make of the GPP Web Portal. The GPP Web Portal is a research tool and is provided "as is". Broad does not represent that the GPP Web Portal is free of errors or bugs or suitable for any particular tasks.

ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS ARE DISCLAIMED. IN NO EVENT SHALL BROAD OR ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE GPP WEB PORTAL, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Governing Law

The terms and conditions herein shall be construed, governed, interpreted, and applied in accordance with the internal laws of the Commonwealth of Massachusetts, U.S.A. Furthermore, by accessing, downloading, or using the Database, You consent to the personal jurisdiction of, and venue in, the state and federal courts within Massachusetts with respect to Your download or use of the Database.