Nucleotide Global Alignment

Description

Query:
ccsbBroad304_11616
Subject:
NR_110729.1
Aligned Length:
3263
Identities:
171
Gaps:
3065

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  AGTTTGTCTGGTGGTGGAAGGAGGGGGTGGCTGCGCCCGCCATGCTGGGGCTCGTGTTTTTCTCTTCCGCTTCA  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  GGCTTTGGTGAAATGGGCTGAGGAAGGGGGAATTGAACTGAGAGACTCCTTGTCCGTCCCCCATTTCTTTCTTT  148

Query    1  ----------------ATGGAGTCTCACTCTGTCACCCAGGCTGGAGTGCAGTGGCGTGATCTTGGCTCACTGC  58
                            ||||||||||.|||||||.||||||||||||||||||||....||.||.|||||||||
Sbjct  149  TTTTTTTTTTTTTGAGATGGAGTCTCGCTCTGTCGCCCAGGCTGGAGTGCAGTGGGACAATTTTAGCTCACTGC  222

Query   59  AACCTCTGCCTCCTGGGTTCAAGCAATTCTCCCACCTCAGCCTCCCAAGTAGCTGGGATTACAGACGTGTGCCA  132
            ||||||.||||||.||||||||||||||||||..||||||||||||.||||||||||||||||..||...||||
Sbjct  223  AACCTCCGCCTCCCGGGTTCAAGCAATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGATTACATGCGCCCGCCA  296

Query  133  CCATACCTGGGTAATTTTTGCATTTTTAGTGGAGAGGGAGTTTCACCATGTTGGCCAGGTTGGT------CT--  198
            |||.||||||.|||||||||.|||||||||.||||.||.|||||||||.||||||||||..|||      ||  
Sbjct  297  CCACACCTGGCTAATTTTTGTATTTTTAGTAGAGACGGGGTTTCACCACGTTGGCCAGGCCGGTACCGAACTCC  370

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct  371  CAACCTCAGGCGATCCACCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGACACAGCGCCTGGCCT  444

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct  445  GTCCTTTTTATGTATTGCCATATTTTCTTTTCTTTTCTTTTCTGTGAGATCCCTGTTGAGTTTTGTTAACAAGG  518

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct  519  CTATGCTGATATAATGTGTGGAGAAGTGTTCTCTCTTTTTCTATTCTTTGAAAGTGCTAGTGTAGGATTGATGT  592

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct  593  TATTTATTTTTTATGTGTTTGGAAGAAGTCACCAGCCATCTGGACCTAGAGTTTTCTTTGTGGAAAGACTTTAA  666

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct  667  ATTACAAATTCTATTTCTTTTATAAAAATACAACTATTCAGATGTTCTATTTTATTTCTGGGTCTCACTCTGTT  740

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct  741  ACGCAGGCTGGAGTACAGTGGCACATTCTTGACTGACTGCAACCTCCACCTCCCAGGCTCAAGCGATCCTCCCA  814

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct  815  CCTTGGATCTGCTTTGTCTCTATTGTTTTTTCTGCAGGTGCTGGGAGAGTACTTGTTGGCATATGCTGATGGTC  888

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct  889  ATCTGCATGATTGGACTCTTCCATATCTGCTCCAGAAGCTTGAGTGTCTCCACTACAGGAAGAGTCTTTGTCAT  962

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct  963  TACTGGTTTTAGAAAAGCTGTCCTCAGAGCCACCATTTTTCTTGATGCCTTTCACGGTGACAACGGCCAGCACT  1036

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 1037  TGCCCTGAGGACATCTCTTCAGGAAGCTCTGCTACAAGAATGGCGAAGCAATCTTTTTTCTTGGCATCTCATTT  1110

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 1111  TGCCCTGTGAAGAGATAGGGCTGCTTCTGGGGACTTTTCACTGATCACCATCCCCGCCAGGTCATCCTTGAAAT  1184

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 1185  CATTTACCTGGACTCCCTAGGGTGCCTTCACATTACATGGGGCCTCCTTTTCCTTGATGTTGTTGGCAAATTCT  1258

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 1259  TTCACTGGATTATCTATGGGAACTTTTTCCTTGGCACATTTGTCGGCATTCAGATCCAGTGGAGCATCCTCATG  1332

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 1333  TGAGCTTTCGTTGGTGAGGTCTTCCACCAGGGTATCCTCCATGGGAACTTTTTCCTTGGCTCATTTGTCAGCCT  1406

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 1407  TTAAATTTAGCAAAACATCCCCATCTGAGCTTTTGTTGGCAAGGTCTTCCACCAGGGTATCCTCCGTGGGAACT  1480

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 1481  TTTCCTTGGTGAATTCATCAGCCTTCAATCCAGTAGAGCGTCCTCATCTGAGCTTTCATTGGCAAGGTCTTTCA  1554

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 1555  CCAGGGTATCCTCTGTGGGAACTTTTTCTTTCATGCGTTTGTCAACCTTCAAGTCCAGTGAGGCATCCTTATCT  1628

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 1629  GAGCTTTCGTTTCCAAGGTCTTCCACCAGGGTATCCTCCATGGGAACTTTTTCCTTGGCACGTTCTTTGGCCTT  1702

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 1703  CAAATCCAGTGGGGTGTCCTAATCTGAAATTTCATTGGCGAGGTCTTCCAGAGGATCCTCCATGGCACCTTTTT  1776

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 1777  CCTTGGCACATTCATTGGCCTTCCAAAGCCATGGGGCATTTTCATCTGAGCTTTCACTGGCTTGGTATCCTTCC  1850

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 1851  AGGATATCTTCCATGTGAACACTTGCCTGAGTTGCTGAGTCTGTCAAGTGAACAGCAAGAACCTGTTCAGAGGA  1924

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 1925  AGTGTCGCTGGTCTGCTCCCCTGCCAGGTTGTCCTTGAAATCTTCAGATGGCTACCTGCCAGGGTGCACATGAG  1998

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 1999  GATGACACCTGCGGTGGCACATTCTCTCTCTAAAACTGCGCTGGCAGACCATGGATTCGCCATGGACAGTGGAG  2072

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 2073  TCTCCTGAAACCTGAGTATCCACTGCTGCATCTTGGAGGCAATACTCTAGCCTTCACGAGCACCCTTCTACTCC  2146

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 2147  AGTCAGGCTGAAGTCTCCCTCGCTGTCACCGCCACAACTGTAGGAGGTGAGCCACAGAGCCGTGCCATCTGCAA  2220

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 2221  GCTCCAAACTCCACCTCACCACAGGTGACTCCTCCTTCACTTTCTCCTCCAGCCTTTCTCAGAGTGGCTGGGCG  2294

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 2295  GGCAAAGCCAGAAAAGCCACTCTGGCCACACTGCAGCCTCTGTTGCCACCACCAACTGCAGTGAGGCAAGCCAT  2368

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 2369  GGTGCCACAGGCTCCAACCTCCAGCATGTGGCAGGTGATTCCCCTTCCCCTTCTCCTGGTTCTCTAAGCCAGGA  2442

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 2443  ACAGAGTAGCTCGGTGGGCAGATACAGAAGAGCCTAAAATCTGTTGTACTATTTTAAGAAAAACTTCTCTTGCC  2516

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 2517  TGTAATCCCAGCACTTTGGGAGGCCGAGGTGGGTGGATCACCCAAAGTCAGGAATTCAAGACCAGCCTGGCCAA  2590

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 2591  CATAGCAAAACCTCATCGCTACTAAAAATACAAAAAACAAAAAACAAACAAAAAAAAATTAGCTGGATATTGTA  2664

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 2665  GTGCGTGCCTGTTATCCCTGCTCTTTGGGAGGCTGAGGCAGGAGAATCACTTGAACCTGTGTTAGAATCAAAAT  2738

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 2739  GCTTGTTTCTTGGTGTCGCAAGGAAAAATTAGCATTCAGACAAAAAGTTTTCTCAGCAAGGCAATTTTACTTTC  2812

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 2813  TGTAGAAAGGGTGCTGCCCATCAGCAATCCTGCCAGGAGAGCACAATGAACAAAGAAAGGCAGGAATATTTATC  2886

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 2887  CCTTATGCATTGGGTCCTTACTGCTGTGTCCTGTCTCCATTGGTTGGAGCTGGACCTCACAGTCTAAGCTAAAC  2960

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 2961  CCAATTGGCTAACAACTTAAAAAACTTTCTTAAATAGGTAAAGGCAATGGAGAACAAAGGAAAAGAGGAAGTTG  3034

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 3035  CTTGCCAAAAGACTTGGAGAAGTAATAACATTTCCAAATAAGGAAAGGGCATAAGCTGTGAGCTGGGACATGCT  3108

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 3109  TGAGCACGTCGAGACCAAATATCTTGGTTAACGTACAAGGACACAGAAGGTACTTATTTCCTTATATCTAACAA  3182

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 3183  CTACATAAGATATGGTTTAAAAAAGAGTTACTAACACAAAGCAAAGAGGCTTAAAAAAAGTTAATTAAAAATAT  3256

Query  199  -------  198
                   
Sbjct 3257  TATTTCT  3263

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