Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_11616
- Subject:
- NR_125333.1
- Aligned Length:
- 4264
- Identities:
- 173
- Gaps:
- 4066
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GTTAAGGCATTCAGGGACTCTGACTGCGCAAGATGGAGTGTAGGCCGGCCGGCGAGACTGCACCTCCCAGCATG 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 CCTTGCAGCCAGGACTGGAGTCGGTACTTAAGAGTGATGGGGTTCCCTAGATACTTTAGGCCGTCGCATCGATT 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 ATAGAGATTGAGGTGGAACCCGGGGCCTGGGAACTGGACGCACGCGGAGGGCGAAGATGGAAGCCTGGCGCTGT 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 GTGAGGAAGGGCTACGGCCACTGTGTGGTGGGAAGAGGCCGGTGTGATAAAGCGGAATTGGGAATATATATGTA 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 GCCATGATAAAGAAAAAACGAAGATCCTAGGAGACAAAAATGTTGATCCCAAATGTGAAGACAGTGAGAACAAG 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 TTTGACTTTTCAGTGATGTCCTATAATATACTTTCACAAGATTTACTGGAAGATAACTCTCACCTTTATAGACA 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 TTGCCGGCGGCCAGTATTACACTGGAGTTTTAGGTTTCCCAATATTCTGAAAGAAATTAAACATTTTGATGCAG 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 ACGTACTTTGTTTGCAAGAAGTTCAAGAAGATCATTATGGAGCAGAGATCAGGCCAAGTTTGGAATCACTGGGT 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 TATCACTGTGAATATAAGATGCGGACAGGAAGGAAACCTGATGGCTGTGCTATTTGCTTCAAACATTCCAAATT 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 TTCACTCTTGTCAGTGAACCCAGTGGAATTCTTCCGCCCTGATATTTCTCTGTTGGACAGAGACAATGTTGGAT 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 TAGTTTTACTCTTACAGCCCAAAATTCCATATGCTGCCTGCCCTGCAATCTGCGTAGCAAATACGCATCTGTTG 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 TATAATCCAAGGCGAGGTGATATTAAGCTGACGCAATTGGCAATGCTACTGGCAGAGATTTCCAGTGTTGCCCA 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 CCAGAAAGATGGCAGCTTCTGCCCTATTGTTATGTGTGGTGACTTTAATTCTGTTCCTGGTTCTCCACTATATA 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 GTTTCATAAAGGAAGGAAAATTGAATTATGAAGGACTTCCCATAGGAAAGACAGTGATCTGACACAAACACAGC 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 TGAAGCAAACAGAGGTCCTAGTGACAGCTGAAAAATTGTCTTCAAATTTACAGCACCATTTCAGTTTGTCATCT 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 GTTTATTCACATTACTTTCCTGACACTGGAATTCCAGAAGTGACCACCTGTCATTCCCGAAGTGCCATAACTGT 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 GGATTATATTTTCTACTCTGCAGAAAAGGAAGATGTTGCTGGGCACCCAGGAGCTGAAGTTGCTTTGGTTGGTG 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 GCTTGAAACTTCTAGCTAGACTGTCACTTCTTACAGAACAAGACTTATGGACTGTTAATGGACTTCCAAACGAA 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 AATAACTCTTCAGATCATCTGCCTTTATTGGCAAAGTTCAGACTTGAGCTCTGACTCTCTTTGATCACATACTA 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 ATTTTCTTTCCAATTTGTATTGTTTTTCAAAGAATGTAAAGTTCTTAAGTGTATGCATGTTGTTTATTTTTGCA 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 CTGTGGAGATTCTGAAGCGGTTATGTTAGATGCTTTGAAACTCCATATCAGAAGAAATAACTTTATAACAATTT 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 TTTTTAATAATGAAAAATATTTTCGTGACAAGTGAGCTCTAAATTCTCTTTATTGTAAAAGAGATGTAAAGGTT 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 TTATATTCTAAATCCTAGTAAAATTGACAGTGATTTTTAAATATAATGCATCTTCCTTTGTCTGCTTAGTAAAA 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 AATTTCATTTCATAATTTTGGCAAGCTCTGTAGTGGATCCAAAGTATCTTTGAGTTCTTGCAAACTACAAGTTG 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 TTTCCTTTCCAGAAGGCTTGATTTCATTAGGAGACCCCTCTATTGAGTTCTAAATAGTTTATCTTAGAAAGCCT 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 TGGGTCATTCACAGGTATCCAACCAGCCATTGTTTAGTTTGTTTTTGAAGGGGTTTGATAATGCTTTTTAAGTT 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 GTACAGAATGCTTAATCCATCTTATTACTGTCCTGAGCCATGTAATATGCCTGCATCGTGTTGGGGAAATGTTT 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 GGGAAATATAAGCCAGCATAACGTGTAAAGCTCACTCTTTCACCCTGGAACAGACAAGAGGTGGGCTTAATAGA 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 GGCAGAGACTGGGGATATACCTTTGTTTCCCTAGCATTTTTATTTATTTATTTTTATTTTATTTTATTTTTTGA 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 GATGGAGTTTCACTCTTGTTGCCCAGGCTGGGGGTGCAATGGCGCAATCTTTGCTCACTGCAACCCCTGCCTCC 2220
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2221 CGGGCTCAAGCGATTCTCCTGCCTCAGCCTCTCGAGTAGCTGGGATTACAGGCATGCGTCACCACTCCCAGCTA 2294
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2295 ATTTTGTATTTTCAGTAGAGACAGGGTTTCCCCATGTTGGTTAGGCTGGTCTCGAACTCCCAACCTCAGGTGAT 2368
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2369 CCGCCCACCTCAGCTCTCAAAGTGCTGGGATTACAGGCGGGAGCCACTGCACATGGCAGCATTTTTTAAAAATT 2442
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2443 CAGTTTTAAGATCTCTGGTTTAGGGGAGAGATTTTATTTTACTGAACCAGTTCTATAGAAATTTATTTTATTAG 2516
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2517 GAAATTTGTCTTTGGAACAAAGTGGCAGCTATAAAATTATTTTTGTTAAGCCTCAGAAATATGAGGAAGCCTGT 2590
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2591 AAAACTCTAGTGGGGAGATATTAACTTGGAGACCTAATGCTCTGTAAATAGTCATTTAAACTGTTGGTTTTAGT 2664
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2665 GGTTTTGTTTCTAAAATGTTTTCTTTTACCGTGATGCACCAGTATGAGATGGTGCTGACACTTTCTATGAAGTG 2738
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2739 GTTATGAGCAGGTTTAATAAATCCTCTATACAAGTGTTTGAATCAATTTTAAAACATAAAAAGTGGAAATTTCC 2812
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2813 TTTTTTGTAGACAGTAGGAACAAGGAATTATATGCATTTTTACTAAGTAGTAATTTTACACTGAATTGTAAATG 2886
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2887 TTTTTACAGTGAGTTTTATTAATAGAATGCTTCACCTTAAATTGGAAAACAATAATAGTCTTGGACTAAGTCTT 2960
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2961 TGTACTAAAGCATTTGCTATAATTATTTTTAAAAAAACAAACAGATGAAAACCTCAGAGAAGGCATGTGGATTA 3034
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3035 TAAGATTTGTCTAGTAAAAATTGTAATTGAATATGTTTAAATATTTAATTTCTCATTTTGGGGGGTTTTTATTT 3108
Query 1 -------------ATGGAGTCTCACTCTGTCACCCAGGCTGGAGTGCAGTGGCGTGATCTTGGCTCACTGCAAC 61
||||.|||||||.||.||.||||||||||||||||||||||.||.||.|||||||||||||
Sbjct 3109 TTTTATTTTTTAGATGGTGTCTCACGCTATCGCCCAGGCTGGAGTGCAGTGGCGCGAACTCGGCTCACTGCAAC 3182
Query 62 CTCTGCCTCCTGGGTTCAAGCAATTCTCCCACCTCAGCCTCCCAAGTAGCTGGGATTACAGACGTGTGCCACCA 135
|||.|||||||||||||||||||||||||..||||||||||||||||||||||||||||||.|.||..||||||
Sbjct 3183 CTCCGCCTCCTGGGTTCAAGCAATTCTCCTTCCTCAGCCTCCCAAGTAGCTGGGATTACAGGCATGCACCACCA 3256
Query 136 TACCTGGGTAATTTTTGCATTTTTAGTGGAGAGGGAGTTTCACCATGTTGGCCAGGTTGGTCT----------- 198
|.||..|.|||||||||.|||||||||.||||.|||.|||..||||||||||||||.||||||
Sbjct 3257 TGCCCAGCTAATTTTTGTATTTTTAGTAGAGATGGAATTTTGCCATGTTGGCCAGGCTGGTCTTGAACTCCTGA 3330
Query 199 -------------------------------------------------------------------------- 198
Sbjct 3331 CCTCAGGGGTGATCCACCCGCCTCGGGCTCCCAAAGTGCTGTGATTACAGGCATGAGCCACCATGCCTGGCCTT 3404
Query 199 -------------------------------------------------------------------------- 198
Sbjct 3405 TGGGGGGATTTTAATTACAGTATTAATTATAGTTCTAGGATTTCCCACATTTTATAGTAGTAGTTTGCAGGATA 3478
Query 199 -------------------------------------------------------------------------- 198
Sbjct 3479 TTATGTGCCCTAATTAGCAGATATAGACATTATCAAATTATAATGATAGTATAATTATCCCTTTTTAATATTGG 3552
Query 199 -------------------------------------------------------------------------- 198
Sbjct 3553 GGAAAGAAAAATGAAAATTCATTAGTTAATTACTGCTTTGTGTTGTGTGAATTTATTAACAAATAACATTATTA 3626
Query 199 -------------------------------------------------------------------------- 198
Sbjct 3627 CATATAGGTCATTGTTAACAAACAAACATCCCTGAAAACCTCTGTGAAAATTTAATTTTTTATATCCTGATTAA 3700
Query 199 -------------------------------------------------------------------------- 198
Sbjct 3701 TATATTGTGACTTTAGGCCCATTTTTCATGTGCTTCACTTTGATAGAGTTAATCCATAAAATTGCTCTTTACTT 3774
Query 199 -------------------------------------------------------------------------- 198
Sbjct 3775 TAGCTTATCAAATGAAGTATTATTTTGTGGACTGGAGGCCAAAAAGTCAATGTGAGCTTCTCACAGGTTTTTAA 3848
Query 199 -------------------------------------------------------------------------- 198
Sbjct 3849 AGCTCCACTAAAAATAATTATCCACTTGTCTTTACTTTTGTTGACCAGAATAGTTGGTAACTCTGCCAGAGCCT 3922
Query 199 -------------------------------------------------------------------------- 198
Sbjct 3923 GTACTTACCTGCCAAAAACAATTAAATCTGGTTAATGCCTGAAACCAAATCTCTCAGTCTCAAGTGTTATACTA 3996
Query 199 -------------------------------------------------------------------------- 198
Sbjct 3997 TCCAAGTTTTAAATGGAAAGGTAAACTGTGGAGTAATGAAATTTTGGTTTTACTGTACCTTTTGCTATCAAGAT 4070
Query 199 -------------------------------------------------------------------------- 198
Sbjct 4071 AATATTCATGTTTGAAATCTTGTCTTTATTTGGAATTTAGTTACTGTCTGCTTTTAACCTTTGCTTTCCTAAAG 4144
Query 199 -------------------------------------------------------------------------- 198
Sbjct 4145 AAAGTTTGAGATCCAGAGAGTTCAAGGGATTGGGGAAAGAGAGGCGTCAAGTCATTTGCACTTTGTACCTGTAA 4218
Query 199 ---------------------------------------------- 198
Sbjct 4219 GTTAGGTAATAAACTATTATACTCGTAAAAAAAAAAAAAAAAAAAA 4264
