Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_11616
- Subject:
- NR_130154.2
- Aligned Length:
- 6957
- Identities:
- 173
- Gaps:
- 6759
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GCAGTGAGTTCGACACACCATGCCGACTGTCAGCGTGAAGCGTGATCTGCTCTTCCAAGCCCTGGGCCGCACCT 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 ACACTGACGAAGAATTTGATGAACTATGTTTTGAATTTGGTCTGGAGCTTGATGAAATTAAAGACCTAGAGCTT 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 TTATGTCCAAGGTGCAGTTTGTCCACTGATCACCAGCATCGCTGTGTTTGGCCCATAAAGAAGGCTGCCTCCTA 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 TCAGGAAAAAACTGGAGCAATACAATGCACCGTGGAAGGAGAGAGTGGAACTAATTGAAAAAGTCATAACTATA 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 CAAACCAGAAAATCACTGGAACTGAAGAAAAAGACATCTGAGAAGGAAATAATAAGTAAAGAACAAGGTAATGT 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 AAAGGCAGCAGGAGCCTCTGATGTTGTTCTTTACAAAATTGACGTCCCTGCCAATAGATATGATCTCCTGTGTC 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 TGGAAGGATTGGTTCGAGGACTTCAGGTCTTCAAAGAAAGGATAAAGGCTCCAGTGTATAAACGGGTAATGCCT 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 GATGGAAAAATCCAGAAATTGATTATCACAGAAGAGACAGCTAAGATACGTCCTTTTGCGGTAGCAGCAGTTCT 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 CCGTAATATAAAGTTTACTAAAGATCGATATGACAGCTTCATTGAACTTCAGGAGAAATTACATCAGAATATTT 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 GCAGGAAAAGAGCACTGGTTGCCATTGGTACCCATGATTTGGACACTTTGTCGGGCCCATTTACTTATACTGCA 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 AAGCGTCCTTCAGATATCAAATTCAAGCCTCTAAATAAGACCAAGGAGTATACAGCCTGTGAACTGATGAACAT 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 ATACAAGACTGACAATCACCTGAAACATTATTTACATATCATTGAAAACAAACCCCTGTATCCAGTTATCTATG 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 ATAGCAATGGTGTCGTCCTTTCAATGCCTCCCATCATCAATGGGGATCATTCCAGAATAACAGTAAATACTAGA 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 AATATTTTTATTGAATGCACGGGAACTGACTTTACTAAGGCAAAAATAGTTCTTGATATTATTGTCACCATGTT 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 CAGTGAATATTGTGAGAATCAATTTACGGTCGAAGCTGCTGAAGTGGTTTTTCCTAATGGAAAATCACATACCT 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 TTCCAGAATTAGCTTACCGAAAGGAGATGGTGAGAGCTGACCTAATTAACAAAAAAGTTGGAATCAGAGAAACT 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 CCAGAAAATCTTGCCAAACTTCTGACCAGGATGTATTTAAAATCAGAAGTCATAGGTGATGGGAATCAGATTGA 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 GATTGAAATCCCTCCAACCAGAGCTGACATTATCCATGCATGTGATATTGTAGAAGATGCAGCTATTGCTTATG 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 GATATAACAACATTCAGATGACTCTCCCGAAAACTTACACCATAGCTAATCAATTTCCTCTTAATAAGCTCACT 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 GAACTTCTCCGACATGACATGGCAGCCGCTGGCTTCACTGAAGCACTTACCTTTGCCCTGTGCTCCCAAGAAGA 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 TATTGCTGATAAACTAGGTGTGGATATCTCTGCAACAAAGGCAGTCCACATAAGTAATCCTAAAACAGCTGAAT 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 TTCAGGTGGCACGCACTACCCTTCTTCCTGGCCTCCTGAAGACCATAGCAGCAAATCGTAAGATGCCCCTTCCA 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 CTGAAACTGTTTGAAATCTCTGACATTGTAATAAAAGATTCTAATACAGATGTAGGTGCAAAAAACTACAGACA 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 TCTCTGTGCTGTTTATTACAACAAGAATCCTGGGTTTGAGATCATTCATGGGCTGCTGGACAGAATTATGCAGT 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 TGCTCGATGTGCCTCCTGGTGAAGACAAGGGGGGATATGTGATCAAAGCATCAGAAGGGCCTGCTTTCTTCCCC 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 GGGCGATGTGCAGAGATCTTTGCCAGGGGTCAAAGCGTCGGGAAGCTTGGGGTCCTTCATCCTGACGTTATCAC 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 CAAATTTGAGCTGACCATGCCCTGCTCCTCCCTAGAAATCAATGTTGGACCCTTTTTGTGAAGATTGGTCTCTG 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 TGGTGTGATTCTCTTCCCAGGTGTCCCTTTCTCCTCCCCTAGTGTCCTTAAGTCCTCCTCCACAGGGAACATCT 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 ATTTGGGCTTTGATGTTTAATAAAGTAGAAAGCACTGTCTGGCTGTGTGGGTAGAGACCATCCTTTCCCTGCAT 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 ATTAGGCCAGCTTGTGCCATATACCAGTGTGGTGTCTGTGTGTGAAGCTGCATTGTTGGGTAAAAGCCCCGTGG 2220
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2221 AGTGCTGGAGAAATGCACTAGCAGAGTGCAGGATCTGTTCTGAAAGGCAGACGTGCTCCTCAGACATCAGAACA 2294
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2295 TCACATTGGAACGGATTACTCCTGCATAACAAGATCCCATTTCTTTCCTTATTGATAAAACAAGATAATCGATG 2368
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2369 AGAATTCATGTTGCATGAGTTCGAGATAACTGAGGGGTTTAGCTTTGATTTTCTACATTTGACATGTATTCATC 2442
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2443 ATTGAGAAACACTAAAATAACAATATTTTTAGAAAACGTTTAAGAATCAATTATGGTCCAACAATTATAGCTTC 2516
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2517 TGAGGTCAGTTTAAAGTGAAAGAAAAATCTGTAATACAAGGATTCAAAATATGTGAGGGTGCATAGGTATTTTT 2590
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2591 TACTCTATCTGTGATACTCTAAGATAGAGTACATGCAACAAAGATCTGTTCTGCTGTAAGAGTTAAAATGGACA 2664
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2665 AGTATTGATATCAATGCAGTATGAACATTAGGAAACAATGAGAAGCTTATTTTTGCCATAGGCCATACATGTTA 2738
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2739 CTGTAATCAGTCAGTTATAAAATCATGGTTTTAAATACTTAATTGAGCTACTAGTTTCTCTATTGTCCCAGGGA 2812
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2813 GATATTAGACCTCTCTTTTTCTGAAGCTAAGCTTCAGCCAATCCTCCTTGTTTTATATCCTAATTTCCTTTCTT 2886
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2887 ACTTCAATCTAGAATTCTCCAGTAGGTACCATCTCTGGAAAAAAGCTGGGTCTCATGTTTGAGACAAGTTCCCA 2960
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2961 GGTACTATTGAAGTAATAAGAAATATGATAAAATATAATACTTTAAAGTCCCAGTAGAAATAGCTAACAAAGGC 3034
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3035 TGGGTGCGCTGTGGCTCATGCCTGTAATCCTAGCACTTTGGGAGGCTGAGGTGGGCAGATCACTTGAGGCCAAT 3108
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3109 AGTTCGAGATCAGCCTGACCAACATGGTGAAATGCCATCTCCACTAAAAATATAAAAATTAGCCAGGCATGGTG 3182
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3183 GTGTGGGCCTGCAGTCCCAGCTACCTGGGAGGCTGAGTCAGGAAAATCTCTTGAACCAGGAGGTGGACGTTGCA 3256
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3257 GTGATCCCAGATTGTGCCACTGCCCTCCAGCCTGGGTGACAGAGTGAGATTCTGTCTACAAAAAAAAAAAAGAA 3330
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3331 GAAGTAGCTAACAAAGATAGTGAAATAAGAATTATGTTTATGGATCTTTTGCTGAGTCTACTACTAGGAGAAAA 3404
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3405 CCTGACCATATTACAACCTTGAATTGGGGCAGCAGTGTCTAACTCTGTAAGATTTGTGAACACACACACTTCCA 3478
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3479 GCTGACCCTTCACAGCTCTGTTATAAGCAGATCCTTACAACATTTTAAAAATGAAATATGCCCTCTAAAAATAA 3552
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3553 TGCATGCCAAAAGGACTTGTATCCAGCATGCATAAAGATTTCTTAAAACTTAATAATAAAACTTAATAGTAAAA 3626
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3627 ATAAAACAACTGTTTTTTAAAAATGTGCAAGAGTTGAGCAAACATTTCCCAAAAGATGACATATGAATGAGCAC 3700
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3701 TTGAAAAGATCCTCAACATCGTTAGTCATCAGGGAAATGCAACTAAAATTCACAATGACAAACTGCATACCCAT 3774
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3775 TAAAATGGCTAAAATTTAAGATTCATAAATCAAATACTGCTGAGACTGGAGCAAGTGGAACTTTCATGCACTGC 3848
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3849 TGGTGAGTCACAATGTAAAATGTTACATTGTGACTTTAGAAAACAGCTTGGCAGTCTCTTGAAACATACACCTA 3922
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3923 CCATCTAGCCATTCTATTCCTAGGTTTACCCATATGGCCAAAGATTTTTATGCAAGTGTTCACAGTGTTACTTA 3996
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3997 TAGTAGTTACAAATTGCAGTATATCCATACTATGAAATACTTCTCAGCAATAAGAAGGAATGAACTACTGATCC 4070
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4071 TCAAAACAACATGAATGAATTTCAAAACAGTATGCTAAGTGAAAGCAAGAGACACAAAAGACTCTATTTAATTC 4144
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4145 TATTTACCTGAGAGTCTAAAAAAGTCAAAAGCAGGTGGTCGGCAGGACCTCAGGAAAGAGAACTGACTGCAGTG 4218
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4219 GGTTAAGAGAAAACTTTTTGGGGTGATGGAAATTTTATCTTAATTGAGGTGGTAGGTGTACTTCAGGTGTAGGT 4292
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4293 TATACCTTTGTAAAGCTGGGAGAAAAAGAATGTAATGTAACATGTAGTATTTTACTGATTTTAACTACATAACA 4366
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4367 CCAGTTGATAAATGCCTAGAGAAATAGCCTGAACTGTAGAATTGGCAGTTGTGCTCAAGGTGGCTCACTGGTCC 4440
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4441 ACAGCTATTAATGATATATTCTCCCTTAGTTTCAGGTTCGCTCTAGTTAAAATCATGGCTTATGGATCATCATA 4514
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4515 TGATAGCCCTTGTTGAAGTAGGTGGAACCATTTGTTCTGTCAGCAGCTACCCACCTGGATATTTTTGGGGGTGG 4588
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4589 CCAAAATTACTTGTAATGAAAAACCCACTAATGCCTAATTGTATATCCCAGCATGAAAGGGGAAAGATCAACTC 4662
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4663 CATGCATCATGTAGATGTTTCTGCCCTCGGAAGCAGGAAATGGTAGGCAGAAAAACAGTGTCGGCTGCATTGGA 4736
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4737 AGAAGCGAATCCAGCTCATGAGTCGAGGCTCTGCAGCCAGATCATCTTACACTTGTCCCTGGTGAAGCATTTGA 4810
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4811 ACTGGAGCCAGGGCAGTCTGTGAGTACTGCCAAAAGCCTTTATTACAGAAGATGCACACCTTCTTAGTAAAAAC 4884
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4885 TGGGAGCTCTAGTATTAAAGTGAAAATTAAATGGAATTGATTTTTGTTCTAGCTTAGAAAAAACTTAAATTCTA 4958
Query 1 -------------------------------------------------------------ATGGAGTCTCACT 13
|.||||||||.||
Sbjct 4959 CCACTACAGCCTCACAGTCCTGCAGTGCTCTTCTAGTTTTGTTTGTTTTTTGTTTTTTTAGACGGAGTCTCGCT 5032
Query 14 CTGTCACCCAGGCTGGAGTGCAGTGGCGTGATCTTGGCTCACTGCAACCTCTGCCTCCTGGGTTCAAGCAATTC 87
||||||||||||||||||||||.||||...|||||||||||||||||||||..|||||||||||||||||||||
Sbjct 5033 CTGTCACCCAGGCTGGAGTGCAATGGCACAATCTTGGCTCACTGCAACCTCCACCTCCTGGGTTCAAGCAATTC 5106
Query 88 TCCCACCTCAGCCTCCCAAGTAGCTGGGATTACAGACGTGTGCCACCATACCTGGGTAATTTTTGCATTTTTAG 161
|||..|||||||.||||.|||||||||||.|||||..||||||||||||.|||||.|||||||||.||||||||
Sbjct 5107 TCCTGCCTCAGCTTCCCGAGTAGCTGGGACTACAGGTGTGTGCCACCATGCCTGGATAATTTTTGTATTTTTAG 5180
Query 162 TGGAGAGGGAGTTTCACCATGTTGGCCAGGTTGGTCT------------------------------------- 198
|.||||.||.|||||||||.|||.||.|||.||||||
Sbjct 5181 TAGAGACGGGGTTTCACCACGTTAGCTAGGCTGGTCTCGAACTTCTGACCTCAGGCGATCTGTCCACCTCTGCC 5254
Query 199 -------------------------------------------------------------------------- 198
Sbjct 5255 TCCCAAAGTGCTGGGATTACAGGCGCCCAGCCTGCTCTTCTGTTTTTAAATTATTTTTGAATTGATCTTTTTTC 5328
Query 199 -------------------------------------------------------------------------- 198
Sbjct 5329 ACATTTTAATTTTTTTGGTTTAATAACGGTATGAGAGTAGGAATTCTCCCTGATGTGTAGGGTGAAAACAGTTG 5402
Query 199 -------------------------------------------------------------------------- 198
Sbjct 5403 AGTTTCAGAGAGATCAATAACTTACTCAGAAGTCACATAGCCAATAAATGAGTTTGAGACACTATAAAAGAGTG 5476
Query 199 -------------------------------------------------------------------------- 198
Sbjct 5477 ACTTGGAGTCCACAGACCACTCACTGATTTGCATTATTTACTTATTTATGCGAAAGTAAATAATGGGACTTTCT 5550
Query 199 -------------------------------------------------------------------------- 198
Sbjct 5551 ACACTTTTTAAAAATATAAAAATAATGGGAGACAAAAAGTTAAAAATTGTTAAGTCCAATACTTTAAAAAAACT 5624
Query 199 -------------------------------------------------------------------------- 198
Sbjct 5625 CTGCAAACTGTGGCCTTACTGAGTTAATCTACCTTTCTTCCTCCTGATTCCCTGAAGTAACTAACTGCTGTTAA 5698
Query 199 -------------------------------------------------------------------------- 198
Sbjct 5699 CAATTTAGCCTGTATTGTTCCTTAGTTTGGACATTTTCCTTGATTTGTACAGTCAGCCACACACACCTGCTCAC 5772
Query 199 -------------------------------------------------------------------------- 198
Sbjct 5773 ATTTTTGGGGGTCATGCTCTACTTACTGGTTTGCAACAAGTTTTGTTTTTTATTTTACATATATCTCATGACAT 5846
Query 199 -------------------------------------------------------------------------- 198
Sbjct 5847 TTCACTTAATATGCCCCATTTTTTCAGGTCAGTGCCTATAGACCTATCTCATTCTTTTAAATGAGGTAATATTC 5920
Query 199 -------------------------------------------------------------------------- 198
Sbjct 5921 TATTGTACAGATGTCCGTAATTGTTCAATTATTCCCTTGTTGGTGGACATTCAGTTGTTTCCAACTGTTTGCAA 5994
Query 199 -------------------------------------------------------------------------- 198
Sbjct 5995 TTATAAACACTGCTCCAATGAACCCCCTATCCTGCTAAATAGCACTGGCTTAGGACCCCAAGGAAAACCAGTCC 6068
Query 199 -------------------------------------------------------------------------- 198
Sbjct 6069 TAATGGGTGCAAGACTGTATAAATATCCACATTTGACAGACACATTCAGAGATGCATAGAGTTCATTAGATATT 6142
Query 199 -------------------------------------------------------------------------- 198
Sbjct 6143 TCTTTGATGTGACGTTTGTACTTGAACTATATATTATTCCAGTACCTTACATCTTAGATGTAGAAGTCGCTAGG 6216
Query 199 -------------------------------------------------------------------------- 198
Sbjct 6217 TCAAAGGATGTGTTTTGAATTTAAAACATGTTGAATGACTGTTCTCACATTTTAAACAGGAGTAATCTACTACA 6290
Query 199 -------------------------------------------------------------------------- 198
Sbjct 6291 AACCAGCCAGCCTAACCACTGCCCCTGCTCTCAGCAATGATGGGCTCATCAGCTTGGTAAGAGAGAACATTACT 6364
Query 199 -------------------------------------------------------------------------- 198
Sbjct 6365 CACAATCTTGCTTCTCAATCTTAATCTATTTGTGCTTGGTGTTTTATATAACATCACTAACCCTAATACTTGAG 6438
Query 199 -------------------------------------------------------------------------- 198
Sbjct 6439 TATTTACTTTGGCCCTTCTGTCCATTTTATCCAAAAGCAAACAGATAGCCTTCAAGGGACACCATTGCCTTAAG 6512
Query 199 -------------------------------------------------------------------------- 198
Sbjct 6513 CAGAATATGCCTCCTAAGCATTGAAAGCCTTTGACCCATCTGATATCCAAGTTCTGGCTTATTATGTTATTAGG 6586
Query 199 -------------------------------------------------------------------------- 198
Sbjct 6587 GCCTTGAATAACTTTATGTATATTATTATGGACTGAATGTATCCCCACAAATTCATGTTGACCCTCTGACCTCC 6660
Query 199 -------------------------------------------------------------------------- 198
Sbjct 6661 AGTGTGATGGTCTTTGGAGATGAGGCCTTTGGCAGGTGATTAGAGCTAGATGAGGTCATGAGAGGGAGGCCCTC 6734
Query 199 -------------------------------------------------------------------------- 198
Sbjct 6735 ATGAAAGGCTCAGTGGCCTGATAAGAAGAAACACCAGAGAGCTTGCTCTGTTTCTCTGCCTACCTGGCGCACAC 6808
Query 199 -------------------------------------------------------------------------- 198
Sbjct 6809 ATACAGAAGAGGTGATATGACCACACAGCAACATGGTGGCCACCAGCAAGCTAGGAGAGGGATCAGAATGAAAC 6882
Query 199 -------------------------------------------------------------------------- 198
Sbjct 6883 CTATTTTGCTGGCACCTTGATCTTGAAATTCTAGCCTCCAGAACTGTGAGAAATAAAATTCTTTTATTGAAGCC 6956
Query 199 - 198
Sbjct 6957 A 6957
