Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_11616
- Subject:
- NR_136739.2
- Aligned Length:
- 7228
- Identities:
- 170
- Gaps:
- 7033
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 CCTTTCTGCAGAGTCCCGGCAGTGCGGGACTCCGGTAGCCGCCCCTCCGGTAGCCGCCCCTCCTGCCCCCGCGC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 CGCCGCCCTATATGTTGCCCGCCGCGGCCTCTGGGGCATGGAGCACGCTGCCCAGCCCTGGCGATGGCAACGGC 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 GACGGGGGTGGCGGAGGAGCGCCTGCTGGCCGCGCTCGCCTACCTGCAGTGCGCCGTGGGCTGCGCGGTCTTCG 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 CGCGCAATCGTCAGACGAACTCAGTGTACGGCCGCCACGCGCTGCCCAGCCACAGGCTCCGAGTGCCGGCGCGG 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 GCCGCCTGGGTGGTGCAGGAGCTGCCCTCGCTGGCCCTGCCGCTCTACCAGTACGCCAGCGAGTCCGCCCCGCG 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 TCTCCGCAGCGCGCCCAACTGCATCCTCCTGGCCATGTTCCTCGTCCACTACGGGCATCGGTGCTTAATTTACC 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 CATTTCTGATGCGAGGAGGAAAGCCTATGCCACTGTTGGCGTGTACAATGGCGATTATGTTCTGTACCTGTAAC 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 GGCTATTTGCAAAGCAGATACTTGAGCCATTGTGCAGTGTATGCTGATGACTGGGTAACAGATCCCCGTTTTCT 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 AATAGAGGAAGAACAGGCTTTTGAGTTCCTGTGCAGATCACACGATTTATGCCTCCCCATGTTCTCTGAGGCAG 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 AAAGGATGTCCCTAAGATGTGAAAGGTCAGAAGAGTTACACAGCTGGCCCAAGACATCTAGACGCAGTGAATGG 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 CAGAGCGGTGATTTCCACCACCTCACCAAGCTGAGCTTCCGCAAGTGGTTTTGGCTTGTGGTTAACGGGCATGT 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 TGATAAACATCCATTCAGATCATATCCTAAGGAATCTCAGAAAACCAGGAGATACTGGATACAAAATACCAAGG 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 GGAGGCTTATTTGAATACGTAACTGCAGCCAACTATTTTGGAGAAATCATGGAGTGGTGTGGCTATGCCCTGGC 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 CAGCTGGTCTGTCCAAGGCGCGGCTTTTGCTTTCTTCACGTTTTGTTTTTTATCTGGTAGAGCAAAAGAGCATC 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 ATGAGTGGTACCTCCGGAAATTTGAAGAGTATCCAAAGTTCAGAAAAATTATAATTCCATTTTTGTTTTAAGTG 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 CGTTTTTCATGAAATTATCTTCAACTTGAAGCTTTCCAATGGCGCTTCTCTATGGACTTTGTAAATAAGTTATA 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 TCTTTGTAATTTTCCTGCTACTTTATCATTTTCAAGATGTCCTCTAGGAATTTTTTTTCTAGTAATTTTGCAAT 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 CTACCTAATAAGTACCTAAATACGCTGAAATGGAGGTTGAATATCCTACTGTGTAACAGGTCAGAATTTCAAGC 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 TCTGGGTAATAACTGCTGATATTTTTTCTAATTTCAAATTTACCTCTTTTGGCTATGTCTTGCCAAGTGTGTAT 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 GAGACTAGACTTTACAACTGTCTTTGATGGCATTTTCAGAACAATAAATGTCACAATCCCTTCTATAGCCCCCT 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 ACAGTGATCTCTTCAAGGTCAACTGCAGTGTTGCTTCCCTCCCCCTATAGGGCTGGAATCTGTCTAGGAGCCCT 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 CTCTCGGAGGCCACAGAGGCTGGGGGTAGCCATTGTGCAGTCATGGCCCGGGGGAAACTTGCCAACCTTCGTGT 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 CAGGTGCTGTGTGTAAGTGGAGAACTTGGGGATAGAGGAGGAAGCTCCTCGTGGCCCTTCCAAGGTGAGGCAAA 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 GGCATCTGGACTTGTTCCAGCCCAGCCCACCGGGTGACATCACCGGGCAGGGAGGGGTGCTGGTGGTGGTTCAT 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 ACGGAGTAAGCTGCTCTGCCTGTGTGAGTGGCTCCTGGGCCCTAAACAGGCACCTTTAGGCCATGGGTCACTCA 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 CCGTGAGCCATCAATGTGCTCTGGTCTGACATGGTTTCTCTCTGTCTTCTAGTCTAGACCTAGTTTTTTTGTTC 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 TGTTCCCCACGTATGGATATAGTAGAGATTGTTGTCTGTGAAATTTCTCTTTTGTAGATTTTGAGTTTTCCCTT 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 GTAGTGTAAAGAATGATCACTTTCTGTAACAATAACAAGACCACTTTTTAAGATTTATCCTGTTTGTTCTTTGT 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 TGATTGAAACATAATAATTGTTAAAATTCTCTACAGCCTTCTTTTTCTTCCATAGCTAATCTTCCTTCTAATAG 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 TTTTTGCTTTCTGTTTTGCTGTTGTTGCTTTGCAAAGCTTTCCCCTCATAGCCTGTACCTGTTATCAATATAAA 2220
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2221 ATAATCTTCCTGTTGAATGCTTCATGACTTGAATTCTACTTTGATAAAAACATTGCCATACTGCTTTTTATCTT 2294
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2295 GATGAATTCATCTGGCATTGCTTTGCCTTATCATCTCATCTGGAGTTTTTAAATGCCATTTGTTTCAGTTGTCT 2368
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2369 TTAACAACATAATAAATAGACTTTGCCATTTAACAAGGTAGCTCAAATTCTTTTACTAATTGTTACATCGAAAC 2442
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2443 ATTCTTTCATCATATTTCCTGTTTTTATTTGGTTTTTTCAACTTCTTCTGTTTACTATCTACAGTGATTTGGAA 2516
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2517 AGGAGATTTCCTTTAAAACAAACAAGCTTATTGGGAATGGCTTTTATGATTTTTAAAGTAGCCTTGAGAGCTTC 2590
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2591 CAGTTAAATCTGATGAGCTGAACATACACCTTTCCTTCTCCCCTCTCTATTCTGACCCCAGTTGAAATCACCTC 2664
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2665 AAAGGAATTTAGGTGGGGGAGTGGCCCCATAAAGAGAGTGAGAGAGAGTCACCACTGCAGATGGACCACAGCAC 2738
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2739 GGGTGGAGATGGGCCTGATGTGGCAGAGCAGAGAGGCCATGACAGTGCACACCCTGCGGAGACCCTGGGTCCTC 2812
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2813 ACATCTGGGCTGACAGAAGGCAGAGGGAAATGAGCATCTCAAAGTGAGACCAACTAAACATGGCGCCTGCAGCA 2886
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2887 GAAAGCAGTGTCCTCTGCACCCCCACTCTCCAGGGAGAGCACAGAGAGCCCAGAAATGAGCCATGTGCCCATTG 2960
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2961 CCGGGGAAGAGAAGGTAGGCTGAGGAGGTGGCCTTTCCTAACACAAAAATTAACTAAGTGGGGAAAACCAGAGA 3034
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3035 ACTAGGTGTTGGCATCCCAGGAAAAAAATAAAGTCTCCACATTTTGGCCTATAGGGATCCTGCCCCATAATGGC 3108
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3109 TGGTTACCTCCTGCCTCAAGCTGCAGGGAAGCCAGGGGGTGGCATGGCCATGGCTTCTCCCTCAGAGAGGCCTC 3182
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3183 TGTGCACGACTTCAGTCACCCAACACTGACAGAACTTGGAACCCAAAAGCCCATTTCTCTCCTTCCGTCCAGAC 3256
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3257 CCTGTCTGCTGTTATCTGTAGGAAGACCACAGCCAACTGCTATCATGACCAAAGCTAAAATCCAATGAGGCAGA 3330
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3331 GAACAATAGTTGTACCCATCTCCTCCTTAGTCTCCAAGGCCAGCGGTGCATGCATTTGTGCATTCAACAACATT 3404
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3405 TGCCAAGCACTTACTGTATATCAAGCACAGCAGTGGGTGCTGAGGACGGATGGGTAGAAAAAACAGTCCTGGCC 3478
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3479 CAGGTGGAGTGACAGGTAAGAAACAAGTAAGTAGCTAAAATAATGTTAGGTAGAAAAAAATAACAAGAATAAAA 3552
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3553 GCAAGGAAAAGGGAAGGGACCCTCACTTGTGTCTGATACAGCCATAATCTTCTCTATCGGCCATTGCTGTAACC 3626
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3627 AAAGCTTAACCACCTTTCTTAAGATATTGATCAACCAGATCATTGCAAATACTGCTAATTGATTCCTTTTTATG 3700
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3701 GCTGAGTAGTATTCCATTGTATATATATATATACCACTTGTTGACTGATGGGCATTTGGGTTGGTTCCACGATT 3774
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3775 TTGCAGTTGTGAATTGTGCTGCTATAAACATGTGCGTGCAAGTATCTTTTTTTGAATAATGACTTCTTTTCCTC 3848
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3849 TGGGTAGATACCCAGTAATGGGATTGCTGGATCAAATGGTAGTTCTACTTTTAGTTCTAAGGAATTTCCACACT 3922
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3923 GTTTTCCATGGTGGCTCTAATAGTTTACATTCCCACCAGCAGTGTGGAAGTGTTCCATGATTGCCGCATGCATG 3996
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3997 CCAACATCTACTGTTTTTTGATTTTTTTGGTTATGGCCGTTCTTGCAGGAGTAAGGGGGTATCGCACTGTAGTT 4070
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4071 TTTATTTGCATTTCCCTGATCATTAGTGATGTTGAGCATTTTTTCATACTTTGTTGGCCATTTGTATATCTTCT 4144
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4145 TTTGAGAATTGTCTATTCATGTCCTTAACCCACTTTTTGATGGGATTGTTTGTTTTTTTCTTACTGATTTGTTT 4218
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4219 GAGTTTGTTGTAGATTCTGGATATTAGTCCTTTGTCTGATGTATAGATTGTGAAGATTTTCTCCCACTCTGTGC 4292
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4293 GTTGTCTGTTTACTCTGCTGACTGTTGCTTTTACCATGCAAAAGCTCTTTAGTTTAATTAAGTCCCATCTATTT 4366
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4367 ATCTTTGTTTTTATTGTTGGAAACTATTATTCTAAGTTAAGTAACTCAGGAATGGAAAACCAAACAACCTATGT 4440
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4441 TCTCATTGATATGTGGGAGCTAAGCTATGAGGACACAAAGGCATAAGAATGGTACAATGGACTTTGGGGACTTG 4514
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4515 GGGGGAAGGGTAAGGGGGGGTGAGGAATAAAAGACAACATATATGGTATAGTATATACTACTCAGGAGATGGGT 4588
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4589 GCACCAGGATCTCACAAATCACCACTAAAGAATTTACTCATGTAACCAAATACCACCTGTACCCCCAATAACTT 4662
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4663 ATGGGAAAAAAAGATATTCATCGACCTATTCCAGGTCCTCTCTCCACCACTGAGCCTCGTGGGGACATAAAGAG 4736
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4737 CTGCCTGCCCTCCCCTGTTCCCCTTGCCTTTTTGCAGCAGGATTCCTGAAAATGTTGACTTACAGATACGTTTT 4810
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4811 TGAGATATGAACGTTTGTTATTTCCTGGTGCTTAGGGAAGAAAATAATTGATGTTGTGAGTTGGGCGGGACTTT 4884
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4885 AGGGACTATGCTGAACAATCCACTGACCACTGCAGGCTCCCATTTATGATCTTGGGCCAACAGCCACCAGCCTC 4958
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4959 TGTTCATGCAGTCTCACTGAGGGCAGTTACTTCTTTGGAGTGGCATGCCTCTGAGCAGATAATTCCAATAATCA 5032
Query 1 -------------------------------------------------------------------------- 0
Sbjct 5033 ATGTCAAACTAGATATTGAAACAGCCCAAGTGTCCTGGTAAAGCTAGCTGTTGATACTCCTGACTGTTGCATTA 5106
Query 1 -----------------------------ATGGAGTCTCACTCTGTCACCCAGGCTGGAGTGCAGTGGCGTGAT 45
|.|||||||..||||||||||||||||||||||||.|||.|.|||
Sbjct 5107 TTTTGTTTTTTGTTTTGTTTTGTTTTGAGACGGAGTCTTGCTCTGTCACCCAGGCTGGAGTGCAATGGTGCGAT 5180
Query 46 CTTGGCTCACTGCAACCTCTGCCTCCTGGGTTCAAGCAATTCTCCCACCTCAGCCTCCCAAGTAGCTGGGATTA 119
|||||||||||||||.||.|||||||.||||||||.|||||||.|..||||||||||||.||||||||||||||
Sbjct 5181 CTTGGCTCACTGCAAGCTGTGCCTCCCGGGTTCAAACAATTCTTCTGCCTCAGCCTCCCGAGTAGCTGGGATTA 5254
Query 120 CAGACGTG--TGCCACCATACCTGGGTAATTTTTGCATTTTTAGTGGAGAGGGAGTTTCACCATGTTGGCCAGG 191
||| ||| |||||||||.||..|.||| |||||.|||||||||.||||..|.||||||||||||||.|||||
Sbjct 5255 CAG--GTGCATGCCACCATGCCCAGCTAA-TTTTGTATTTTTAGTAGAGACAGGGTTTCACCATGTTGTCCAGG 5325
Query 192 TTGGTCT------------------------------------------------------------------- 198
.||||||
Sbjct 5326 CTGGTCTTGAACTCCTGACCTCAAGTGATCCACCCACCTTGGCCTCCCAAGGTGCTGGGATTACAGGCACAAGC 5399
Query 199 -------------------------------------------------------------------------- 198
Sbjct 5400 CACAGCTCCCGGCCCAACTGTTGCATTATTATTTGCAAATGTTGGCTATCCCTGCTGTTGTCTATATATCAATT 5473
Query 199 -------------------------------------------------------------------------- 198
Sbjct 5474 TTGTCTACCCAACACAGCTGTAAACTTCTCAAGGTGAGGAGTGAGCCATCACTCTTTGCACCTCTTGCTGTGAT 5547
Query 199 -------------------------------------------------------------------------- 198
Sbjct 5548 TGACATGGTATACCTTAAGATATATGTTAATTCCTATGTCTTAATAAATATTGGCTTATGGAGAATTTGTTGGA 5621
Query 199 -------------------------------------------------------------------------- 198
Sbjct 5622 GCAAGTACAGACCCTATGTTTAACTTCTTTTATTCAACAGAATTAAAAAACTAGCTAGTTCTCTCAATAAAATA 5695
Query 199 -------------------------------------------------------------------------- 198
Sbjct 5696 ATACTTTCTTTTCTTTCTTAAAATCTAGCTGATCTGGTCTAAAATACACATGTGGGAGGCGGGATTGTAGAAAT 5769
Query 199 -------------------------------------------------------------------------- 198
Sbjct 5770 ATCTCAAATTAATTAGCGTCTAGCTCTTTGTAAGGTAATTGACAGTCTGAGTTAGTTGCTTCCCCCACTGCAAA 5843
Query 199 -------------------------------------------------------------------------- 198
Sbjct 5844 GCAGCAAAATCTGCTCTCAAAGGCTTCACGTAGCCGGGAAAACTCCGTTCCCAATTCAGATCCTCTGGGGAGGG 5917
Query 199 -------------------------------------------------------------------------- 198
Sbjct 5918 CATCAATTATTTCCTATTGTTTTTAGCACCGATTGTTCTGTCTAATTTGAAAGGATCCAAAAAAGGAAATGATA 5991
Query 199 -------------------------------------------------------------------------- 198
Sbjct 5992 CTTGGCATTAGTATCATTCTCCATCACTCTTGAAAGATATATGAAGGGAATGTTGGCGCAATCAGTCTAGAAAC 6065
Query 199 -------------------------------------------------------------------------- 198
Sbjct 6066 ATATTTCTCCCATAACAATAAGCCAGTTCTTTTTGCTTTGAATCAGAAATAGCTCCATCAGGCCCATGAAGGAA 6139
Query 199 -------------------------------------------------------------------------- 198
Sbjct 6140 AGGGAAACAAAACTGAGTGCCAAGCATATGATAACATGCTCAGCATCATATGACATTAGGGGATTGCAAATTGA 6213
Query 199 -------------------------------------------------------------------------- 198
Sbjct 6214 AACAACAGTACCACCACACACCTATCAGAATGGCCAAAATCCAGAAGACTGACATCACCAATGCTAGTGAGAAT 6287
Query 199 -------------------------------------------------------------------------- 198
Sbjct 6288 GTGGAGCAACAGGAACTCTCATTCACGGCTGGTGGGGATGCAAAGTGGTGGAGCCACTTGGGAAGACAGTCTGG 6361
Query 199 -------------------------------------------------------------------------- 198
Sbjct 6362 CAGATTCCTAAAAAGGTAAACATACTCTTACTAAACAATCTAGTAGATTTGCTCCTAGGTGTTTACCCAAAGGA 6435
Query 199 -------------------------------------------------------------------------- 198
Sbjct 6436 GTTGAAAACATGTCCACACAGAAAACCTGCACATGAATGTTTATAGCAGCTTTACTCAAAATTGCCAAAAATTG 6509
Query 199 -------------------------------------------------------------------------- 198
Sbjct 6510 GAAGCAACCAAGATGTCCTTCAATAGGTGGGCGGATAAAGAAATTGTATCCAATTCTATTTCTATGAGGAAAAT 6583
Query 199 -------------------------------------------------------------------------- 198
Sbjct 6584 CTATTCATACAATAGAATACTAGTGTCAGAGATTTTTTTTTAACAAAGAGCTATCAAGCCATGAAAAGATAAGG 6657
Query 199 -------------------------------------------------------------------------- 198
Sbjct 6658 AAGAACTTTAATGCATATTGGTAAGTGAAAAAAGCCAGTTTGCAAAGGCTAGATACTATATGATCCCAACTGTA 6731
Query 199 -------------------------------------------------------------------------- 198
Sbjct 6732 TAACATTCTGAAAAAGGCACAACTATGGAGACAATAAAAAGAACAGAGTTTTGGATGAAGGGAGGGATGAACAG 6805
Query 199 -------------------------------------------------------------------------- 198
Sbjct 6806 GCAGAATACAAACAAATTTTAGGGCAGTGAAACTATTATTATGATACTTTATGGATATAGAATATTATGCATTT 6879
Query 199 -------------------------------------------------------------------------- 198
Sbjct 6880 TTCAAAACACATAGAATATACAACATGAAGAATGAATGCTAATGTAAACTCTGGATTTTTATTAATAATATTAT 6953
Query 199 -------------------------------------------------------------------------- 198
Sbjct 6954 TTAATTAAAATGATTTATTTTACTTATTTTCATTATTATCTAAAATGTTATTTAATTATTAAATTTAGATGCTA 7027
Query 199 -------------------------------------------------------------------------- 198
Sbjct 7028 CTTAATTTTTGCTTTATTATTATTATGTTAATATCATCAACTGTAACTAGTGTACAACACTAATGCAAGATGTT 7101
Query 199 -------------------------------------------------------------------------- 198
Sbjct 7102 AATAGGGGAAATCGTGTTGGAGAGAGAGATATGTGAGAACTCTGTACTTTCTTTTCAATGTTTCTGTAAACATA 7175
Query 199 -------------------------------------------------- 198
Sbjct 7176 AAGCTGCTCTAAAAAATTAAATCTATTAAAAAAAAAACTGAGTGGAAAAA 7225
