Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_11616
- Subject:
- NR_145836.2
- Aligned Length:
- 6814
- Identities:
- 170
- Gaps:
- 6622
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 AGTGGCTTGGCGGCCGTTGTCTGTGGAGGGGGGCCTCGCCGGGCTCCCGGAGGCCGAGCGGTTCCTGTTGCATG 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 TAAATCATGTCCTTGTGGTTACATATTTATTAGCAGAAAACTTTTAAATGCAAAACACTCAGAGAAATCACCAC 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 CTTCTACAGAAAACAAGCATGAGGCCAAGAGGAGGCGAACAGAGAGAGTTAGGAGAGAGAAGATAAATTCTACA 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 GTAAATAAAGATTTAGAAAACAGAAAGAGGTCTCGAAGTAACAGCCATTCAGATCATATCAGACGAGGAAGAGG 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 AAGACCTAAAAGTGCATCTGCCAAAAAACATGAGGAAGAAAGAGAGAAACAGGAAAAGGAAATTGACATCTATG 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 CTAACCTGTCTGATGAAAAGGCTTTCGTGTTTTCAGTCGCCTTGGCAGAAATAAATAGAAAAATTATCAATCAA 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 AGACTTATTCTCTGATACTTGTTTGCAAAATCTGCTGAAACTTCTGTCAGGATAACATCAGCAAATTCTCAAAC 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 AGTTATGGACTCTCAGGAGCATTCTGACTGCATCAATAAGGGCCATCGATTGTTTCTTTCTCGCCTGTCGTTTA 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 GCCTGTGCCACACTTCGGGAGCAAAGCTGTGTAGGCTTGGACTGTTCTGGGATTTCCTTGTTTACCAAGGAGTA 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 TTGTCAGTGTTTTGTGTTTGGGATATAAGTAAGTGTATTTGCCAACAACAAAAAAAAACCAACAAAAATGCTGG 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 ATGGATGTTAAAGGATAAAAAGTGATGGGGTATGGGGTAGGTATGAAAACTAGGGTAATAAGATGCTTGATTGT 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 TTTCAGGTTTGCCACCAGAGATGCAATATTTTAAATACTGTCAGAAAGAGTGATTTTTAAAAATATATATTTCA 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 GATTTTCAGTGCTAACAGATTGCATATATACAGTTCATTTACTTTTATTAAATTGGCAATCGATATTTTATTGA 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 ATGGGGAATTAAGAATATAAACTGTAAATTTTGTCTTAAATTGATTTTTTTTCTTGGCCTTTATTTTTATTACT 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 TAAGGTATGAGTTATATTTTAGGAGATACTTTCTAGACAGTTTGAAGTTTGGGTGCTATATGAAGAAAAACATT 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 TAATGATATACTCAGATATAAACACCTTGTTTTCTTGAATGTAATTTATTTATTAGCTAAAAAAAAAAAACAAA 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 CTGCTCTCAAGATGGTGCCTGTTAACCTAAACATGAAATATATTTATTACATGCAAAATATTTCTTAGCCACTT 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 TTAAGCAGTAATGTTTTATCTGAATGGATATTTGTTTCTATATCCTGATAATTATTTAAATTGTTACTTTCAAT 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 CTGGAAGAAAAAATAAACCTTAATATTGAAACTAAGTAGATTAAATAGTGTGATAAAAGTTTTTTGTTCTGGTG 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 AAGTTTGTGAAATATATTTAAATTCTTAATTTTTCTAGTGTTAAGTCATAATCGTTTATAGTTGATTTATATTA 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 AATGCTTTTGCATTTTGGCATATCAATTTAATGATTAACATATTCAAACTTGGTAATCACTCCCCTTATTTTCA 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 GTCGCTCTTCCCCCAATCTGTTTAGAAATCCTTTTAAAGCCTTCTTACAGAAGATAGTCATCAGTTAGATTTAG 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 CCCCCTTTTAAGAGAATCTCCCTTTCAATTTTAGCCGTAACATTATCAATTTCAGACTTCATCCTGCATCTCCC 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 ATCACCTCCTCAAAGAAAAAAGGTCAACATTTTTTCCTACTTTATTTAAATGGTAACCAGCAGAGGGAGCTTAA 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 GAGGTACTCTAGATAGGATAAAGAATTTTCCTAAGGATTCCTTTTCCTTTAATCCCTGTATCTATCTGCAGGTA 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 CTACTGCAACTATTTTGTATGCATTTTATTTATTTATTTAGGAGACAGAGTCTTGCTCGGTCGCCCAGGCTGGA 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 GTGCAGTGGCACTGTCTCAGCTCACTGCAACCTCTGCCTCCTGGGTTCAAGTGATTCTTATGCCTCAGCCTCCT 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 GAGTAGCTGTGACTAGAGGCGTGCGCCACCACGCCTGGCTGTTTTTTTTTTTGTATTTTTTAGTACAGATGGGG 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 TCTCAGCATGTTGGCCAGGCTGGTCTCAAATTCCTGGCCTTAGGTGATCTGCCCGCCTTGGCCTCCCAAAGTGC 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 TGGGATTACAGGCATGAGCCACTGCACTCAGCCTTGTGTGCGTTTTAGAGTCTTAACTAGTAGTTTCCCCAATA 2220
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2221 ATGTAATGTGATTTTATCTTTGAAACATACTGTAAGGAAACTTTTGATTTTAAGTAAAAAAGCTTAAAAATGAT 2294
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2295 TAATATCTAAAAATGCTTGTATACATATATATGTCCTCAGAAAAAGCAAGAACAGCTTGTGGAATAAGCACGTC 2368
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2369 TTTAAGGAATTATCGATGTCAGAGTCTATCCATTTAAAGCTGAAGACCATTACAGGAAAGTCATGTTAAAATAT 2442
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2443 TCATTGGATATGGTAAAGGAGGTACTGGTGGCTGGGCTGGAGCTTGCCGTATAGAAAAGTAATTACTTCAGATC 2516
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2517 TCATAATGTTAAATTATTGGCTTATTTAAAAATTTCCGTGGCAGAGAGGCAAATTAGGTTTCCTCTGTGACATA 2590
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2591 ACCTATTTAACCAATTTTTCAAAAAATTGTACTCTATGAGCTTTCTTGTTATAAAGCTAAAAAATTTAATTTGT 2664
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2665 CTAGGCATGTTGTAATGGTCCCAGAAAATATTACTTTGTCACTGGTGTCAGAGAAACCTCTGTCATCAGCAGAT 2738
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2739 GTCCTAAGAGTATAATTATAGTTCTTTACTTAATCCAAAATTTGTTCTGCTCTGATATCTATAAATGATATGAT 2812
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2813 TATTCAAAATACCTTGAAATGATTCCACAATTAGATTAGGTCTGTTGAAGATAACTTATTCTTAAATATGAGTA 2886
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2887 AGATTAAATAAAAGTAGTTTGAGAGTTGTTACTCCCTGCCTCAACTCCATGGTATTCCAAAATGTTTTTGTGGG 2960
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2961 CACTTTAATACTTGTAGTTTGATTTTGTTTGTTAGTTTTAGAAATGAACATTTCTTAGATTTTCATGGGTATTT 3034
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3035 TTTGGCTGTATTTAAATGTAAATGATATAAAAGTAAGGGAAATTGTGCAAATTATTTCTTGTGTAGTAATCAGT 3108
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3109 GGAAGTGATCAAACAGCTTGAAGCAGTTTATGATGAGAAAATTTAAAATTGCAAATGACCTGAAAATTTAGCCA 3182
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3183 GTCTATTCTTATTTCTTTAAATTTCAGAAATACTTAAGAAAAAAAAAAAAAAGGTCAGTATGACCTCTGAGTTG 3256
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3257 CTTCCTAAAAGTAATCAGATAGTGTTCTCCCTCAGATAAGATTTCAAATTGAAAAGTATTTGACTTCTTTAACT 3330
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3331 CTAGTAATTGCACTTGATTCTCTAATTCTGATCATTAAAATGACTTGGCAATATTTAATTTTGGCTTGCCTTTC 3404
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3405 AATCTGCATGTTTGTCTTAAATTTAGAAAAATTAAGCTCTTTACTTACTTTTATATAAAGTATTAATTGGCCAG 3478
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3479 GCATGGTGGCTTACACCTGTAATCCCAACACTTTGGGAGGCCAAGGCAGGAGAGTTGTTTGAAGCCAGGAGTTT 3552
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3553 GAGACCAGCCTGGGCAACATGATGAGACCGCGTCTCTACAAAAAGTAAAATTAGCTGGGTGTGGTGCTTCCAGC 3626
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3627 TACTAGGCAGCTGAGGCTAAAGGATCACTTGAGCCCAGGAGTTCGAGGCTGCAGTGAGTGATGATCTTGCCACT 3700
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3701 GCACTCCAGCCTGGGAGGCAGAGCAAGAAACACCCTGTGTGAAAAAAGTATTGAATTTGTTTGATTCCACTTTC 3774
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3775 AAAATATGCTCTAGATACAGGTAGTCATTCTGCCAAATTGTGTTCTTCTCTAAAACATTTTGTCCGTCATTCTT 3848
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3849 TGAAACTCATTCTTAATTATTTCCACTTTACCTTCTAGTTTGGTTTGATGCCTTATATTCTTGCTAGTTAAAAG 3922
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3923 CATTTTTTCCCTAGTATTTTCTGTCTTTCTAGCCTTTAAGGCATATTGTTGTTAACAAATCTCTTATTTAAGTT 3996
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3997 AATTAAAGTTTTTTCTGTGCAGCTGGGTTTTTTCTTTTACTACATGACAAGCTTCATTTTTACATTTGGAAGTA 4070
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4071 CATGTATATATGTTTATATATTTTTATTCTCAGGATCTATTTTCTAGGGAACTATTTTTTTAAATTATTCTTTT 4144
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4145 GTGCTGCCTTAACCCATTTATTATAGTTTGAATATTAGTAGTACTTACTACTCAAAGATTACAACTATACTAAT 4218
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4219 AACTATCCTAACATACAAAGCAGACTCTCCAGGATTAAAAGTATGAGACATATAACAGAGTCTGGAATAGAATA 4292
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4293 ATTCTTTTTACCCCAGTCAAGTATTTGCCTTTTGCATTATTAAGGAATCTGTTTTGTTCTTTTATTGATAATTT 4366
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4367 CTATATTTTTTTCTTTGCCTTATTGCACTGGTTGGGACTTTTTGCCTTGATCCAGTTGTAGGGGGGAAACATTC 4440
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4441 AGTCATTAAGCATTAAATAACTTTGTTGTTGTTGTGGGCTTGAAAAAATACCCTTTAGTAGATTGAGGGTAGAC 4514
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4515 TCTTTTATTTCTGCTTGTTGGAAGTTTTCTGTCAGGAACAGATGTTGAATTTTGTCAGATGCTTTTTCTGCATA 4588
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4589 ATTGATAGGACCTTTTTTCTCCCCTTTAGAATGTTCATATGGTGAAACATACTGATAGCTTTTCTTTTCTTTTT 4662
Query 1 --------ATGGAGTCTCACTCTGTCACCCAGGCTGGAGTGCAGTGGCGTGATCTTGGCTCACTGCAACCTCTG 66
|.|||||||||||||||||||||||||||||||||.|||.|.|||||||||||||||||.||||||
Sbjct 4663 TTTTTGACACGGAGTCTCACTCTGTCACCCAGGCTGGAGTGCAATGGTGCGATCTTGGCTCACTGCACCCTCTG 4736
Query 67 CCTCCTGGGTTCAAGCAATTCTCCCACCTCAGCCTCCCAAGTAGCTGGGATTACAGACGTGTGC--CACCATAC 138
||||.||||||||||| |||.|.||| ||||||||||||||.|||||..||||| |||||| ||||||.|
Sbjct 4737 CCTCTTGGGTTCAAGC--TTCCCTCAC--CAGCCTCCCAAGTACCTGGGTATACAG--GTGTGCATCACCATGC 4804
Query 139 CTGGGTAATTTTTGCATTTTTAGTGGAGAGGGAGTTTCACCATGTTGGCCAGGTTGGTCT-------------- 198
|.||.|||||||||.|||||||||.||||..|..|||.|||||||||||||||.||||||
Sbjct 4805 CCGGCTAATTTTTGAATTTTTAGTAGAGATAGGTTTTTACCATGTTGGCCAGGCTGGTCTTCAACTCCTGACTC 4878
Query 199 -------------------------------------------------------------------------- 198
Sbjct 4879 AGCCTCCCAAAGTGTTGGGATTACAGTCTCGCTCTGTCGCCCAGGCTGGAGGGCAGTGGTGTGATCTTGGCTCA 4952
Query 199 -------------------------------------------------------------------------- 198
Sbjct 4953 ATGCAACCTTGCAACCTCTGCCTCCCGAGTTCAAGCGATTCTCCTGCCTTAGCCTCCTGAGTAGCTGGAATTAC 5026
Query 199 -------------------------------------------------------------------------- 198
Sbjct 5027 AGGCGCACGCCACTACACCCAGCTTCTTTTTGTATTTTTAGTAGAGATGGAGTTTCACCATGTTGGCCAAGCTG 5100
Query 199 -------------------------------------------------------------------------- 198
Sbjct 5101 GTCTCGAACTCCTGAGCTCCGGTGATCCACCCGCCTTTACAGGCATGAGCCACCGTGCCCGGCTGCATTTCTCT 5174
Query 199 -------------------------------------------------------------------------- 198
Sbjct 5175 TTTGTAAGAACCTGCTCTGGTTTATTGATATTTTGCTGTTTTTCTGTTTTAAGTTTCATTAATTTCTGATCTTT 5248
Query 199 -------------------------------------------------------------------------- 198
Sbjct 5249 AGTATTTTCTCCTTTCTTTGCTTTGGGCTTATTTGCTCCCTTTTCTAGCTTATTGTGGCGGAAGCTCAGATCAT 5322
Query 199 -------------------------------------------------------------------------- 198
Sbjct 5323 TGATTTTAAAATTTACTTATTTATTTATTTATTTATTTAATTCAACACTGATCAGAAGGCTTTTTGTGCTTTTC 5396
Query 199 -------------------------------------------------------------------------- 198
Sbjct 5397 TAAAAAAAGCATTTAATGCTATAAATTTCCCATTTGCTTTATCTCACAAATTTTATTGTGTTGTAATTTTGTGT 5470
Query 199 -------------------------------------------------------------------------- 198
Sbjct 5471 TCAATTTAGAATATTCTGATTTTTCTTGGTATTACTATAATTTTCAAATATTTAGAGTTTTTTTCAGTTATCTT 5544
Query 199 -------------------------------------------------------------------------- 198
Sbjct 5545 TCTGTTACTGATTGTAATTTATTGTTTTTTAAAATTATAGTTCTTTGAATAGTTTTGCAGTATTTGCTCTAGGG 5618
Query 199 -------------------------------------------------------------------------- 198
Sbjct 5619 ATTACTATAAACATACTTCACTTTTTACAGTTCACTTAGAAGTCAATATTTTACCAGTTCAAGTGGAATGTAGA 5692
Query 199 -------------------------------------------------------------------------- 198
Sbjct 5693 AAAATCTTACCACTGTTTACATTCCTTTACCCTCTCCCCTTTATGTTATAATTTTCTTATAAATCATAAGACTT 5766
Query 199 -------------------------------------------------------------------------- 198
Sbjct 5767 GGCTGGGCACAGTGGCTCACCTGTAATCCCAGGACTGGGAGGCCGAGGCGAGCAGATTGCTTAAGTCCAGGAGT 5840
Query 199 -------------------------------------------------------------------------- 198
Sbjct 5841 TCGAGACCAGCCTGGACAATGTGGTGAAACCCCAACTCTACAAAAAATACACAAAATTAGCTAGGCGTGGTAGC 5914
Query 199 -------------------------------------------------------------------------- 198
Sbjct 5915 ATGTTCCTGTAGTCCCAGCTACTCAGGAGGCTGAAGTGGGAGGATTACTTGAGCCCAGGAGGCAGAGGTTGCAG 5988
Query 199 -------------------------------------------------------------------------- 198
Sbjct 5989 TGAGCCAAGATCACTCCACTCCACTCCAGCCTGAGTGACAGAGCTAGACACTGTGTCTCAAAAAATAAAAATAA 6062
Query 199 -------------------------------------------------------------------------- 198
Sbjct 6063 AAAATAAGACTCATCAGATAATGTATTTTTTCCTTACAACTATCATAGATATTTTTAAGAACCCAAGAGGAAAA 6136
Query 199 -------------------------------------------------------------------------- 198
Sbjct 6137 CAGTCTATCACATTTACCACAATATTTATCATTTGTATTAATCTTCCTTAATTCTTGATGTTCCAAGTTTACAT 6210
Query 199 -------------------------------------------------------------------------- 198
Sbjct 6211 AGGTATCAGTCCTTTTCATCTGGAAAATTTCTTTTAGTGCAGGTCTGTTGACATTTAATTCTCTTATTTTTTCT 6284
Query 199 -------------------------------------------------------------------------- 198
Sbjct 6285 TCATCTGAGAATGTCTTTATTTTGCCTTAATTCATGAAAGATATTTTTGCTGGATATAAACTACTGTGTTGACA 6358
Query 199 -------------------------------------------------------------------------- 198
Sbjct 6359 GTTCTTTCAGCCTCCATGGTTTCTGATGAGAAATGTGCAGCCATTAAAGTAATATTTCCCCTGTATGAAACATG 6432
Query 199 -------------------------------------------------------------------------- 198
Sbjct 6433 TTATTTTTCTCTGAGTATTTTCAGGAATCTTTGTCTTTGGTTTTTATTGGTTTGATTATGATGTGCCCGGGTGT 6506
Query 199 -------------------------------------------------------------------------- 198
Sbjct 6507 TTGAATTTATTCTCTTTGGGATTTGTTGAGCTTAAATGTGTAAGTTTATGCCTTTCATCAGATTATGTAAAGTT 6580
Query 199 -------------------------------------------------------------------------- 198
Sbjct 6581 TTAAACCATTCAGATATTTTCTGCTCTACTTTCTCCTCCCTCTTAGGCTCCAGTGATGCAAGTGTTAGACTCTT 6654
Query 199 -------------------------------------------------------------------------- 198
Sbjct 6655 TGGTATTATCTCACAGATCTCAGAACCTCTGTTCATTTATTTTATTTTAATAAATCATTTCAGTTAACAAAATC 6728
Query 199 -------------------------------------------------------------------------- 198
Sbjct 6729 ATATATTGTATGCAGCATGATGTTTCAATATGTATGTTCACATTGTAGGATGTCTAAAGTAAAGATAATGAACA 6802
Query 199 ------ 198
Sbjct 6803 TATGCA 6808
