Nucleotide Global Alignment

Description

Query:
ccsbBroad304_11616
Subject:
NR_157849.2
Aligned Length:
5198
Identities:
171
Gaps:
5000

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  CCCGCCTCCCAACCGTGAGGTGTTGGGTTTGGGGGACGCTGGCAGCTGGGTTCTCCCGGTTCCCTTGGGCAGGT  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  GCAGGGTCGGGTTCAAAGCCTCCGGAACGCGTTTTGGCCTGATTTGAGGAGGGGGGCGGGGAGGGACCTGCGGC  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  TTGCGGCCCCGCCCCCTTCTCCGGCTCGCAGCCGACCGGTAAGCCCGCCTCCTCCCTCGGCCGGCCCTGGGGCC  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  GTGTCCGCCGGGCAACTCCAGCCGAGGCCTGGGCTTCTGCCTGCAGGTGTCTGCGGCGAGGCCCCTAGGGTACA  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  GCCCGATTTGGCCCCATGGTGGGTTTCGGGGCCAACCGGCGGGCTGGCCGCCTGCCCTCTCTCGTGCTGGTGGT  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  GCTGCTGGTGGTGATCGTCGTCCTCGCCTTCAACTACTGGAGCATCTCCTCCCGCCACGTCCTGCTTCAGGAGG  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  AGGTGGCCGAGCTGCAGGGCCAGGTCCAGCGCACCGAAGTGGCCCGCGGGCGGCTGGAAAAGCGCAATTCGGAC  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  CTCTTGCTGTTGGTGGACACGCACAAGAAACAGATCGACCAGAAGGAGGCCGACTACGGCCGCCTCAGCAGCCG  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  GCTGCAGGCCAGAGAGGGCCTCGGGAAGAGATGCGAGGATGACAAGGTTAAACTACAGAACAACATATCGTATC  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  AGATGGCAGACATACATCATTTAAAGGAGCAACTTGCTGAGCTTCGTCAGGAATTTCTTCGACAAGAAGACCAG  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  CTTCAGGACTATAGGAAGAACAATACTTACCTTGTGAAGAGGTTAGAATATGAAAGTTTTCAGTGTGGACAGCA  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  GATGAAGGAATTGAGAGCACAGCATGAAGAAAATATTAAAAAGTTAGCAGACCAGTTTTTAGAGGAACAAAAGC  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  AAGAGACCCAAAAGATTCAATCAAATGATGGAAAGGAATTGGATATAAACAATCAAGTAGTACCTAAAAATATT  962

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  963  CCAAAAGTAGCTGAGAATGTTGCAGATAAGAATGAAGAACCCTCAAGCAATCATATTCCACATGGGAAAGAACA  1036

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1037  AATCAAAAGAGGTGGTGATGCAGGGATGCCTGGAATAGAAGAGAATGACCTAGCAAAAGTTGATGATCTTCCCC  1110

Query    1  ---------------------------------------------------ATGGAGTCTCACTCTGTCACCCA  23
                                                               |..|||||||.||||||...|||
Sbjct 1111  CTGCATCCAGGAAAAGCTTTTAGGTTTTGTGTGTGTGTGTGTGTGTGTGTGACAGAGTCTCGCTCTGTTGTCCA  1184

Query   24  GGCTGGAGTGCAGTGGCGTGATCTTGGCTCACTGCAACCTCTGCCTCCTGGGTTCAAGCAATTCTCCCACCTCA  97
            |||||.|||..|||.|||||||||||||||||||||||||..|||||||||||||||||||||||.|...||||
Sbjct 1185  GGCTGAAGTATAGTAGCGTGATCTTGGCTCACTGCAACCTGCGCCTCCTGGGTTCAAGCAATTCTTCTGTCTCA  1258

Query   98  GCCTCCCAAGTAGCTGGGATTACAGACGTGTGCCACCATACCTGGGTAA-TTTTTGCATTTTTAGTGGAGAGGG  170
            ||||||||||||||||.||||||||.||..|||||||||.|||||.||| ||||||.|||||||||.||||.||
Sbjct 1259  GCCTCCCAAGTAGCTGAGATTACAGGCGCCTGCCACCATGCCTGGCTAATTTTTTGTATTTTTAGTAGAGATGG  1332

Query  171  AGTTTCACCATGTTGGCCAGGTTGGTCT----------------------------------------------  198
            .||||||||||||||||||||.||||||                                              
Sbjct 1333  GGTTTCACCATGTTGGCCAGGCTGGTCTTGAACTCCTGACCTCAGGTGATCCACCCGCCTCGGCCTCCCAAAGT  1406

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 1407  TCTGGGATTACAGGTGTGAGCCGCAGCACCTGGCCAGGCTTTTAGTTTTTAAATATTAGGTAGAGGTAATCTAT  1480

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 1481  TTGTAAGATAACAGATTTTCTAGAACAGAGGCTTCGAATGGTGGTTGCATATTGGAATCTCTGGGGAGCTTGAA  1554

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 1555  AAAAAAAAAGATACTGATGCCTAAATTCCATTCCAGAGATTTTGTTATATTTGTTCTGGGGTTTGACTTGGGCA  1628

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 1629  TTGAAGGTTTAAATGGTCACTAGGTGATTACATTATGTAGCTAAGGCAGAAAAACCTTTACTCTAGACAGATTC  1702

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 1703  TCTAGATCTATACTGTATTAATGCAGTAGCCATTGGTCACATGTGGCTATTTACATTTAAATTCATTACATTTA  1776

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 1777  GGTGAAATTAAATTCAGTTTCTTAGTCAAACTAGCTACACTTAAAGTGCTTACTTAGTAGTTACCTGTGGCTAA  1850

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 1851  AGGCAACTGTGTTGGACAGCACCAATGCAGAACATTTTCATTATTGTAGAAAGTTCTGTTGGACAGTACTGCTC  1924

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 1925  TAGATTGAAACCAGTAATAGTGGTTTTATGGGGAAGAAGATTAGGACAGGGATGAAAAGGTGACTTGCTTTTCA  1998

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 1999  TTATATAATCTTCTGAACTTTTAAATTTTTGTATAATACTAATAAACTACCTATTCAAAAAAATCATTATTTAA  2072

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 2073  AAAAATTAAAGAGAGGCTAGGTGTAGTGGCTTACGCCTGTAATCCCAACACTTTGGGAAGCCTAGGCAAGAGGA  2146

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 2147  TTGCTTGAGGCCAGGAGTTCGAGGCTTGGGCAACATAACAAGACCTCATATCTTAGGAAAAAAAAAAATGGCTA  2220

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 2221  GGCATAGTGGCACACACCTGTAGTCCTAGCTACTTGGGAAGCTGAGGTGGGAGGATCACATGAGCCCAGGAGTT  2294

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 2295  CGAGATTGCAGTGAACTGTGATTGCACCACTGTACTCCAGTCTGGGTGACAGAGAGAGACCCTGTCTAAACAAA  2368

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 2369  AAAGAGAGAGAGAGAGAGAGAGAGGAGGCAGAGTGAGATAACTGAATAGAAGCCTCCACTGATTGTCCTCCCTG  2442

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 2443  CAGTAGCACCAAATTTGACAACTGTCTACACAGAAAAGTACCTTCATGAGAGCCAAAAATCAGCTTTAAGGAAG  2516

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 2517  CCTCCTATTTCAGTTTCTCAACATGAAAGTCATCAAGCAATCTCCCATCTTCCAACTGGACAACCTCTCTCCCC  2590

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 2591  AAATATGCCTCCAGATTCACACATAAACCACAATGGAAACCCCGGTACTTCAAAACAGAATCCTTCCAGTCCTC  2664

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 2665  TTCAGCGTTTAATTCCAGGCTCAAACTTGGACAGTGAACCCAGAATTCAAACAGATATACTAAAGCAGGCTACC  2738

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 2739  AAGGACAGAGTCAGTGATTTCCATAAATTGAAGCAAAATGATGAAGAACGAGAGCTTCAAATGGATCCTGCAGA  2812

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 2813  CTATGGAAAGCAACATTTCAATGATGTCCTTTAAGTCCTAAAGGAATGCTTCAGAAAACCTAAAGTGCTGTAAA  2886

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 2887  ATGAAATCATTCTACTTTGTCCTTTCTGACTTTTGTTGTAAAGACGAATTGTATCAGTTGTAAAGATACATTGA  2960

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 2961  GATAGAATTAAGGAAAAACTTTAATGAAGGAATGTACCCATGTACATATGTGAACTTTTTCATATTGTATTATC  3034

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 3035  AAGGTATAGACTTTTTTGGTTATGATACAGTTAAGCCAAAAACAGCTAATCTTTGCATCTAAAGCAAACTAATG  3108

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 3109  TATATTTCACATTTTATTGAGCCGACTTATTTCCACAAATAGATAAACAGGACAAAATAGTTGTACAGGTTATA  3182

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 3183  TGTGGCATAGCATAACCACAGTAAGAACAGAACAGATATTCAGCAGAAAACTTTTTATACTCTAATTCTTTTTT  3256

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 3257  TTTTTTTTTTTGAGACAGAGTTTTAGTCTTGTTTCCCAGGCTGGAGTGCAATGGCACAATCTTGGCTCACTGCA  3330

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 3331  ACCTCCGCCTCCTGGGTTCAGGCAATTTTCCTGCCTCAGCCTCCCAAGTAGCTGGGATTACAGGCACCCACCAC  3404

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 3405  CATGCCCAGCTAATTTTTGTATTTTTAATAGAGAGCTAATAATTGTATATTTAATAAAGACGGGTTTCACCATG  3478

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 3479  TTGGCCAGGCTGGTCTTGAACTCCTGACCTCAGGTGATCCTCCTGCATTGGCCTCCCAAAGTGCTGGAATTCCA  3552

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 3553  GGCATGAGCCACTGCGCCCAGTCTACACACTAATTCTTGTTAGCCCAACAGCTGTTCTGTTCTATCTACCCCTC  3626

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 3627  ATTTCACGCTCAAGGAGTCATACCTAGAATAGTTACACACAAGAGGGAAACTGGAAGCCAAACACTGTACAGTA  3700

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 3701  TTGTGTAGAAAGTCACCTCCCTACTCCTTTTATTTTACATGAGTGCTGATGTGTTTTGGCAGATGAGCTTTCAG  3774

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 3775  CTGAGGCCTGATGGAAATTGAGATAACCTGCAAAGACATAACAGTATTTATGAGTTATATCTTAGTTCTTGAAA  3848

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 3849  TTGTGGAATGCATGATTGACAATATATTTTTAATTTTTATTTTTTCAAGTAATACCAGTACTGTTTAACTATAG  3922

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 3923  CCAGAACTGGCTAAAATTTTTATATTTTCAGAGTTGAAGTTGGTGAAGACATTCATGATTTAAACACCAGATCC  3996

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 3997  TGAAAGGGGTTAAATCTACTTTGAAATGAATCTGCAATCAGTATTTCAAAGCTTTTCTGGTAATTTTAGTGATC  4070

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 4071  TTATTTGATTAGACTTTTTCAGAAGTACTAAATAAGGAATTTTAACAGGTTTTTATTAATGCACAGATAAATAG  4144

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 4145  AAGTACAGTGAGGTCTATAGCCATTTTATTAAAATAGCTTAAAAGTTTGTAAAAAAATGAATCTTTGTAATTAC  4218

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 4219  TTAATATGTTAGTTAAGAACCCGTCAAGCTTATATTTGCTAGACTTACAAATTATTTTAAATGCATTTATCTTT  4292

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 4293  TTTGACACTATTCAGTGGAATGTGTAAGCTAGCTAATTCTTGTTTTCTGATTTAAAGCACTTTTAAATCTTATC  4366

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 4367  CTGCCCCCTAAAAACAAAAGGTTTTGATCACAAGGGGAAATTTAAGATTGTTAACCCTGTTTTTCAGAAGGGCT  4440

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 4441  ACTGTTAATTGCACATAAACATGAAATGTGTTTTCCCCTGTGTACTAACACATTCTAGGCAAAATTCAAACTTA  4514

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 4515  TAGTGGTAAAGAAACAGGTTGTTCACTTGCTGAGGTGCAAAAATTCTTAAGACTTCTGTTTGAAATTGCTCAAT  4588

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 4589  GACTAGGAAAAGATGTAGTAGTTTACTAAAATTGTTTTTCTACCATATCAAATTAAACAATTCATGCCTTTATA  4662

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 4663  GGGTCAGGCCTACAATGAATAGGTATGGTGGTTTCACAGAATTTTAAAATAGAGTTAAAGGGAAGTGATGTACA  4736

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 4737  TTTCGGGGGCATTAGGGTAGGGAGATGAATCAAAAAATACCCCTAGTAATGCTTTATATTTTAATACTGCAAAA  4810

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 4811  GCTTTACAAATGGAAACCATGCAATTACCTGCCTTAGTTCTTTTGTCATAAAAACAATCACTTGGTTGGTTGTA  4884

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 4885  TTGTAGCTATTACTTATACAGCAACATTTCTTCAATTAGCAGTCTAGACATTTTATAAACAGAAATCTTGGACC  4958

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 4959  AATTGATAATATTTCTGACTGTATTAATATTTTAGTGCTATAAAATACTATGTGAATCTCTTAAAAATCTGACA  5032

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 5033  TTTTACAGTCTGTATTAGACATACTGTTTTTATAATGTTTTACTTCTGCCTTAAGATTTAGGTTTTTTAAATGT  5106

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 5107  ATTTTTGCCCTGAATTAAGTGTTAATTTGATGGAAACTCTGCTTTTAAAATCATCATTTACTGGGTTCTAATAA  5180

Query  199  ------------------  198
                              
Sbjct 5181  ATTAAAAATTAAACTTGT  5198

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