Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_11616
- Subject:
- NR_158629.1
- Aligned Length:
- 4729
- Identities:
- 172
- Gaps:
- 4531
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 AAATGTAGTCACTGTCCCGGAACCTGGGGCAGCGGAGTCCCGTGCGCCCTGTGGTGACAGCTCAGGAGGGTGTG 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 TGCGCTCAGCAGGGGCCAGCATGGACCAGTCTGTGGCAATCCAGGAGACGCTGGCTGAGGGGGAATACTGCGTC 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 ATCGCGGTGCAAGGTGTGCTGTGTGAGGGGGACAGCCGGCAGAGCCGCCTCCTGGGACTCGTGCGCTACCGCCT 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 GGAGCACGGCGGCCAGGAACACGCTCTCTTCCTCTATACGCACCGGAGGATGGCCATTACCGGGGACGATGTCT 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 CTCTGGACCAGATAGTGCCAGTCTCGCGGGATTTTACGCTGGAAGAAGTGTCCCCAGATGGTGAACTCTACATC 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 CTTGTAGAGACGGGGTTTCACCGTGTTGGCCAGGATGGTCTCGATCTCCTGACCTTGTGATCCACCCCACCTCG 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 GCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACCGCACCGGGCCTAAATCAGGCTTTTCTCACAGCTCTAT 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 GAGGTTATCACTGTTTGCATCTCCATTTTATGGACAAGGCTCAGATGTGACCGTCCAGCTGGACACAGCAGAGC 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 TTAGCCTCGTATTCCAACTGCCCTTTGGTTCACAAACCAGGATGTTCCTCCACGAAGTTGCCAGGGCCTGTCCA 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 GGCTTCGATTCTGCGACCCGGGATCCTGAATTCCTGTGGCTGTCTCGGTATAGGTGCGCAGAGCTGGAGCTGGA 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 GATGCCAACGCCGCGCGGTTGTAACTCGGCCCTAGTTACCTGGCCAGGGTGGTTCTAACTTTGATGGTTTGAGA 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 CCAAATGGGAAGGGAGTGCCTATGGACCAAAGCTCCAGGGGTCAAGATAAACCAGAAAGCTTGCAACCAAGTGT 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 CGGACAAGGCTCATATTTTATCCATGCAGAAGTTTGGACTGCGAGATACAATTGTGAAATCACATCTACTACAG 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 AAAGAAGAGGATTACACCTATATCCAGAACTTCAGGTTTTTTGCGGGAACATACAATGTAAATGGGCAGTCCCC 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 CAAAGAATGCCTCCGGCTGTGGCTGAGCAATGGTATCCAGGCCCCAGATGTCTATTGTGTAGGGTTCCAGGAGC 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 TTGATCTGAGTAAGGAAGCTTTTTTCTTTCACGATACCCCAAAGGAGGAAGAGTGGTTCAAAGCTGTGTCAGAG 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 GGTCTTCATCCAGATGCCAAATATGCAAAGGTGAAGCTTATCCGACTGGTTGGGATTATGCTGCTGTTATATGT 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 CAAACAGGAGCATGCAGCTTATATCTCAGAAGTGGAAGCCGAGACTGTGGGGACAGGAATCATGGGGAGGATGG 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 GCAACAAGGGAGGCGTGGCGATCAGGTTCCAGTTCCACAACACCAGCATCTGCGTTGTGAATTCTCACTTGGCA 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 GCCCACATTGAAGAGTATGAGAGGAGGAACCAGGACTATAAGGACATTTGTTCTCGAATGCAGTTTTGTCAGCC 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 TGACCCAAGCCTTCCCCCTCTCACCATCAGCAACCATGATGTGATCTTGTGGCTGGGGGACCTCAACTACAGGA 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 TAGAAGAGCTGGATGTGGAAAAAGTGAAAAAGCTCATCGAAGAGAAGGACTTTCAAATGCTGTATGCATATGAT 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 CAGCTGAAAATTCAGGTGGCCGCAAAGACTGTCTTTGAAGGCTTCACAGAGGGTGAGCTCACATTCCAGCCTAC 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 TTACAAGTATGATACGGGCTCTGACGACTGGGATACCAGGATACATGTTATCCCTTGGTGGGCCCGAATTGCTC 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 TTGCTGCCTCAGATGACTTAGCCACATGGACATGAAGGCCCTGATTCATCACTCCCCACCTGAGCCAGGGCACT 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 CGCCAGGCAGCGGGCACTGCTGTTTCTGTGAGTACTTCCAGTGTGGACTTTGCATTTCAGTGAGAAGTGCCGTG 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 CTCCTGCCTGGTGTGATCGGATTCTCTGGAAAGGGAAGAACATCACTCAGCTGAGTTACCAGAGCCACATGGCC 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 CTGAAGACCAGTGACCACAAGCCTGTCAGCTCAGTGTTTGACATCGGGGTGAGGGTCGTAAATGACGAGCTTTA 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 CCGGAAGACACTGGAGGAAATTGTTCGCTCCCTGGATAAGATGGAAAATGCCAACATTCCTTCTGTGTCCCTGT 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 CCAAGCGAGAGTTCTGTTTTCAGAATGTGAAGTACATGCAATTGAAAGTAGAATCCTTTACAATTCATAATGGA 2220
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2221 CAAGTACCCTGTCATTTTGAATTCATCAACAAGCCTGATGAAGAGTCTTACTGTAAGCAGTGGCTGAATGCCAA 2294
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2295 CCCCAGCAGAGGCTTCCTCCTGCCAGATTCTGATGTTGAGATTGACTTGGAGCTCTTCGTAAATAAGATGACAG 2368
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2369 CTACAAAGCTCAACTCGGGTGAAGACAAAATTGAGGACATTCTGGTTCTGCACTTGGACAGGGGAAAGGATTAC 2442
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2443 TTTTTGTCTGTGTCTGGGAACTACCTGCCCAGCTGTTTTGGGTCTCCCATTCATACACTGTGTTACATGAGAGA 2516
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2517 GCCAATCTTGGACCTACCACTTGAAACCATTAGTGAGCTGACTCTGATGCCAGTATGGACTGGAGATGATGGGA 2590
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2591 GCCAGTTGGATAGCCCCATGGAAATCCCCAAAGAGCTCTGGATGATGGTTGATTACCTGTACCGAAATGCTGTC 2664
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2665 CAGCAGGAAGATCTGTTTCAGCAACCAGGCCTGAGGTCAGAATTTGAACATATCAGGGACTGCTTGGATACTGG 2738
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2739 AATGATTGATAACCTCTCTGCCAGCAATCATTCTGTAGCCGAAGCCCTGCTGCTTTTCCTGGAGAGCCTTCCAG 2812
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2813 AGCCTGTCATCTGTTACAGCACCTACCATAACTGCTTGGAGTGTTCTGGCAACTACACAGCAAGCAAACAGGTC 2886
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2887 ATTTCTACTCTCCCCATATTCCACAAAAATGTCTTCCACTACTTGATGGCGTTTTTGCGAGAACTGCTGAAAAA 2960
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2961 TTCAGCAAAAAATCATTTGGATGAGAATATTCTAGCTAGCATATTTGGCAGCTTATTGCTTCGAAACCCAGCTG 3034
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3035 GTCACCAAAAGCTTGATATGACAGAGAAGAAGAAGGCTCAAGAATTTATTCACCAGTTCCTCTGCAACCCACTC 3108
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3109 TGAGCCTCTCTCTCCTCCTATTTTACTTGAGGCTGCCAATTACCAGCCCCACCTGTTTCAGCTCAAGAGATGCC 3182
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3183 TTAAGATAATTATGTGAGGCCACTTGGTAGCAAGAATGGCAGCTATTTCCTGAGCCTAGTACCCCAATTAAGCC 3256
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3257 CACCATTGGTTAGCACACTCAGCGCTGTGAGTCGTGAAGACACGGGAGAAAATCCACCATAATAAAACTGACAT 3330
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3331 TCAATTTTCAACTTTAGTTATTTAACACAGATTTTTTTATTTTTTATTTTTTTTTATTTTGAGACGGAGTTTTG 3404
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3405 CTCTGTCGCGCAGGGTGGAGTGCGGTGGCACGATCTCGGCTCACTGCAACCTCTGCCTCCTGGGTGCAAGCAAT 3478
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3479 TATCCTGCCTCAGCCTCCCGAGTAGCTGGGACTGCAGGCACACACTGCCACGCCCAGCTAATTTTTTGCATTTT 3552
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3553 AGTAGAGACGGGGTTTCACCGTGTTGCCCAGGCTGTTCTAAAACTCCTGAACTCAGGTAATCTGCCTGCCTCGG 3626
Query 1 ------------------------------------------------------------------------AT 2
||
Sbjct 3627 CCTCCCCAAGTGCTAGGATTACAGATGTGAGCCACCACGCCCGGCCTTTTTTTTTTTTTTTTCTTTTTTGAGAT 3700
Query 3 GGAGTCTCACTC-TGTCACCCAGGCTGGAGTGCAGTGGCGTGATCTTGGCTCACTGCAACCTCTGCCTCCTGGG 75
|||||.|||||| |||..|||||||||||||||..|||||||.||||||||||||||||||||||||||||.||
Sbjct 3701 GGAGTTTCACTCTTGTTGCCCAGGCTGGAGTGCGTTGGCGTGGTCTTGGCTCACTGCAACCTCTGCCTCCTTGG 3774
Query 76 TTCAAGCAATTCTCCCACCTCAGCCTCCCAAGTAGCTGGGATTACAGACGTGTGCCACCATACCTGGGTAATTT 149
|||||||||||||||..||||||||||.|.||||||||||||||.||.|||..||||||||.|||||.||||||
Sbjct 3775 TTCAAGCAATTCTCCTGCCTCAGCCTCTCGAGTAGCTGGGATTATAGGCGTCCGCCACCATGCCTGGCTAATTT 3848
Query 150 T----TGCATTTTTAGTGGAGAGGGAGTTTCACCATGTTGGCCAGGTTGGTCT--------------------- 198
| ||..||||||||..|||....||||||||||||||||||||.||||||
Sbjct 3849 TTTTGTGTGTTTTTAGTATAGACACGGTTTCACCATGTTGGCCAGGCTGGTCTCGAATGCCTGGCCTCAGGTGA 3922
Query 199 -------------------------------------------------------------------------- 198
Sbjct 3923 TCCACCTGCCTTGGCCTCCCAAAGTGCTGGGATTACAGGCATGAACCACCACGCCTGGCCTAAAATGTTTTTAA 3996
Query 199 -------------------------------------------------------------------------- 198
Sbjct 3997 ATAACTGTACTTGTACTCACTCACCCTACCTCCAGGGCATAGTCAGTCTGGGCTGAGATCCCCATGATCAGATA 4070
Query 199 -------------------------------------------------------------------------- 198
Sbjct 4071 TTTGATGGAAAGTCCTGAAAGGCCAATGAGTTGGATGGCAAGAATGCAGGCAGAAGCTGCTGGATAAAATAGGC 4144
Query 199 -------------------------------------------------------------------------- 198
Sbjct 4145 TACAGCCACCTCAGATGCTTTCAGTGCTCTGTCTGAGGATGTGTATATGCATATGCAAACTCGACCCCCGTTCC 4218
Query 199 -------------------------------------------------------------------------- 198
Sbjct 4219 TGCCCAGATAATGGCTCAATAACTCTGAGGCTGGTTGCTCAGCCTCTGAGGGCAATACAGGCATTTAAAAAATT 4292
Query 199 -------------------------------------------------------------------------- 198
Sbjct 4293 AAAATGACCAGGCACAGTGGCTCACGCCTGTAATCTCGGCACTTTGGGAGACTGAGGTGGGAGCATCACTTGAG 4366
Query 199 -------------------------------------------------------------------------- 198
Sbjct 4367 ACCAGGAGTTTGGGACCAGGCTGGGCAACACAGGGAGACCCCCTCTCTACAAAAACATTTTTAAAAAATTAGCT 4440
Query 199 -------------------------------------------------------------------------- 198
Sbjct 4441 GGGTGTGGTGATGCATGCCTGTGGTCCCAGTTACTTGGGAGGCTGACGTGGGTGGCTCACTTGAGCACAGGAGT 4514
Query 199 -------------------------------------------------------------------------- 198
Sbjct 4515 TTGAGGCTGCAGTGACCTATGACCACATCACTGTACGCCAGCCCGGGTGAGAGAGGGAGACCCCGTCTCTAAAA 4588
Query 199 -------------------------------------------------------------------------- 198
Sbjct 4589 ATAAAATGTAAAATCACTGAAAAAATGAGTGTTCGGTGAAACAAGTGGGATTTTCTGGGCCAGCAAGTCTTCCA 4662
Query 199 ------------------------------------------------------------------- 198
Sbjct 4663 AACTGTATATGATGCATCCTGTCTCCATGTGTAATATATTTTAATGATAAATGTATTTTTAACAGTG 4729
