Nucleotide Global Alignment

Description

Query:
ccsbBroad304_11616
Subject:
NR_158630.1
Aligned Length:
4675
Identities:
172
Gaps:
4477

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  AAATGTAGTCACTGTCCCGGAACCTGGGGCAGCGGAGTCCCGTGCGCCCTGTGGTGACAGCTCAGGAGGGTGTG  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  TGCGCTCAGCAGGGGCCAGCATGGACCAGTCTGTGGCAATCCAGGAGACGCTGGCTGAGGGGGAATACTGCGTC  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  ATCGCGGTGCAAGGTGTGCTGTGTGAGGGGGACAGCCGGCAGAGCCGCCTCCTGGGACTCGTGCGCTACCGCCT  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  GGAGCACGGCGGCCAGGAACACGCTCTCTTCCTCTATACGCACCGGAGGATGGCCATTACCGGGGACGATGTCT  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  CTCTGGACCAGATAGTGCCAGTCTCGCGGGATTTTACGCTGGAAGAAGTGTCCCCAGATGGTGAACTCTACATC  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  CTTGGCTCAGATGTGACCGTCCAGCTGGACACAGCAGAGCTTAGCCTCGTATTCCAACTGCCCTTTGGTTCACA  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  AACCAGGATGTTCCTCCACGAAGTTGCCAGGGCCTGTCCAGGCTTCGATTCTGCGACCCGGGATCCTGAATTCC  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  TGTGGCTGTCTCGGTATAGGTGCGCAGAGCTGGAGCTGGAGATGCCAACGCCGCGCGGTTGTAACTCGGCCCTA  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  GTTACCTGGCCAGGGTGGTTCTAACTTTGATGGTTTGAGACCAAATGGGAAGGGAGTGCCTATGGACCAAAGCT  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  CCAGGGGTCAAGATAAACCAGAAAGCTTGCAACCAAGACAGAATAAATCCAAGTCCGAAATTACTGACATGGTT  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  CGCTCCTCCACTATCACAGTGTCGGACAAGGCTCATATTTTATCCATGCAGAAGTTTGGACTGCGAGATACAAT  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  TGTGAAATCACATCTACTACAGAAAGAAGAGGATTACACCTATATCCAGAACTTCAGGTTTTTTGCGGGAACAT  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  ACAATGTAAATGGGCAGTCCCCCAAAGAATGCCTCCGGCTGTGGCTGAGCAATGGTATCCAGGCCCCAGATGTC  962

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  963  TATTGTGTAGGGTTCCAGGAGCTTGATCTGAGTAAGGAAGCTTTTTTCTTTCACGATACCCCAAAGGAGGAAGA  1036

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1037  GTGGTTCAAAGCTGTGTCAGAGGGTCTTCATCCAGATGCCAAATATGCAAAGGTGAAGCTTATCCGACTGGTTG  1110

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1111  GGATTATGCTGCTGTTATATGTCAAACAGGAGCATGCAGCTTATATCTCAGAAGTGGAAGCCGAGACTGTGGGG  1184

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1185  ACAGGAATCATGGGGAGGATGGGCAACAAGGGAGGCGTGGCGATCAGGTTCCAGTTCCACAACACCAGCATCTG  1258

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1259  CGTTGTGAATTCTCACTTGGCAGCCCACATTGAAGAGTATGAGAGGAGGAACCAGGACTATAAGGACATTTGTT  1332

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1333  CTCGAATGCAGTTTTGTCAGCCTGACCCAAGCCTTCCCCCTCTCACCATCAGCAACCATGAGGAGCCTAGCAGG  1406

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1407  GAGTGTCTTGCAGCCGAGCTCTTCCATTCTGGTGAACCTGCAGCATCCTAGTTTGTGAGTGTGATCTTGTGGCT  1480

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1481  GGGGGACCTCAACTACAGGATAGAAGAGCTGGATGTGGAAAAAGTGAAAAAGCTCATCGAAGAGAAGGACTTTC  1554

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1555  AAATGCTGTATGCATATGATCAGCTGAAAATTCAGGTGGCCGCAAAGACTGTCTTTGAAGGCTTCACAGAGGGT  1628

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1629  GAGCTCACATTCCAGCCTACTTACAAGTATGATACGGGCTCTGACGACTGGGATACCAGGATACATGTTATCCC  1702

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1703  TTGGTGGGCCCGAATTGCTCTTGCTGCCTCAGATGACTTAGCCACATGGACATGAAGGCCCTGATTCATCACTC  1776

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1777  CCCACCTGAGCCAGGGCACTCGCCAGGCAGCGGGCACTGCTGTTTCTGTGAGTACTTCCAGTGTGGACTTTGCA  1850

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1851  TTTCAGTGAGAAGTGCCGTGCTCCTGCCTGGTGTGATCGGATTCTCTGGAAAGGGAAGAACATCACTCAGCTGA  1924

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1925  GTTACCAGAGCCACATGGCCCTGAAGACCAGTGACCACAAGCCTGTCAGCTCAGTGTTTGACATCGGGGTGAGG  1998

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1999  GTCGTAAATGACGAGCTTTACCGGAAGACACTGGAGGAAATTGTTCGCTCCCTGGATAAGATGGAAAATGCCAA  2072

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2073  CATTCCTTCTGTGTCCCTGTCCAAGCGAGAGTTCTGTTTTCAGAATGTGAAGTACATGCAATTGAAAGTAGAAT  2146

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2147  CCTTTACAATTCATAATGGACAAGTACCCTGTCATTTTGAATTCATCAACAAGCCTGATGAAGAGTCTTACTGT  2220

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2221  AAGCAGTGGCTGAATGCCAACCCCAGCAGAGGCTTCCTCCTGCCAGATTCTGATGTTGAGATTGACTTGGAGCT  2294

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2295  CTTCGTAAATAAGATGACAGCTACAAAGCTCAACTCGGGTGAAGACAAAATTGAGGACATTCTGGTTCTGCACT  2368

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2369  TGGACAGGGGAAAGGATTACTTTTTGTCTGTGTCTGGGAACTACCTGCCCAGCTGTTTTGGGTCTCCCATTCAT  2442

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2443  ACACTGTGTTACATGAGAGAGCCAATCTTGGACCTACCACTTGAAACCATTAGTGAGCTGACTCTGATGCCAGT  2516

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2517  ATGGACTGGAGATGATGGGAGCCAGTTGGATAGCCCCATGGAAATCCCCAAAGAGCTCTGGATGATGGTTGATT  2590

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2591  ACCTGTACCGAAATGCTGTCCAGCAGGAAGATCTGTTTCAGCAACCAGGCCTGAGGTCAGAATTTGAACATATC  2664

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2665  AGGGACTGCTTGGATACTGGAATGATTGATAACCTCTCTGCCAGCAATCATTCTGTAGCCGAAGCCCTGCTGCT  2738

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2739  TTTCCTGGAGAGCCTTCCAGAGCCTGTCATCTGTTACAGCACCTACCATAACTGCTTGGAGTGTTCTGGCAACT  2812

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2813  ACACAGCAAGCAAACAGGTCATTTCTACTCTCCCCATATTCCACAAAAATGTCTTCCACTACTTGATGGCGTTT  2886

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2887  TTGCGAGAACTGCTGAAAAATTCAGCAAAAAATCATTTGGATGAGAATATTCTAGCTAGCATATTTGGCAGCTT  2960

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2961  ATTGCTTCGAAACCCAGCTGGTCACCAAAAGCTTGATATGACAGAGAAGAAGAAGGCTCAAGAATTTATTCACC  3034

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3035  AGTTCCTCTGCAACCCACTCTGAGCCTCTCTCTCCTCCTATTTTACTTGAGGCTGCCAATTACCAGCCCCACCT  3108

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3109  GTTTCAGCTCAAGAGATGCCTTAAGATAATTATGTGAGGCCACTTGGTAGCAAGAATGGCAGCTATTTCCTGAG  3182

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3183  CCTAGTACCCCAATTAAGCCCACCATTGGTTAGCACACTCAGCGCTGTGAGTCGTGAAGACACGGGAGAAAATC  3256

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3257  CACCATAATAAAACTGACATTCAATTTTCAACTTTAGTTATTTAACACAGATTTTTTTATTTTTTATTTTTTTT  3330

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3331  TATTTTGAGACGGAGTTTTGCTCTGTCGCGCAGGGTGGAGTGCGGTGGCACGATCTCGGCTCACTGCAACCTCT  3404

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3405  GCCTCCTGGGTGCAAGCAATTATCCTGCCTCAGCCTCCCGAGTAGCTGGGACTGCAGGCACACACTGCCACGCC  3478

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3479  CAGCTAATTTTTTGCATTTTAGTAGAGACGGGGTTTCACCGTGTTGCCCAGGCTGTTCTAAAACTCCTGAACTC  3552

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3553  AGGTAATCTGCCTGCCTCGGCCTCCCCAAGTGCTAGGATTACAGATGTGAGCCACCACGCCCGGCCTTTTTTTT  3626

Query    1  ------------------ATGGAGTCTCACTC-TGTCACCCAGGCTGGAGTGCAGTGGCGTGATCTTGGCTCAC  55
                              |||||||.|||||| |||..|||||||||||||||..|||||||.|||||||||||
Sbjct 3627  TTTTTTTTCTTTTTTGAGATGGAGTTTCACTCTTGTTGCCCAGGCTGGAGTGCGTTGGCGTGGTCTTGGCTCAC  3700

Query   56  TGCAACCTCTGCCTCCTGGGTTCAAGCAATTCTCCCACCTCAGCCTCCCAAGTAGCTGGGATTACAGACGTGTG  129
            |||||||||||||||||.|||||||||||||||||..||||||||||.|.||||||||||||||.||.|||..|
Sbjct 3701  TGCAACCTCTGCCTCCTTGGTTCAAGCAATTCTCCTGCCTCAGCCTCTCGAGTAGCTGGGATTATAGGCGTCCG  3774

Query  130  CCACCATACCTGGGTAATTTT----TGCATTTTTAGTGGAGAGGGAGTTTCACCATGTTGGCCAGGTTGGTCT-  198
            |||||||.|||||.|||||||    ||..||||||||..|||....||||||||||||||||||||.|||||| 
Sbjct 3775  CCACCATGCCTGGCTAATTTTTTTGTGTGTTTTTAGTATAGACACGGTTTCACCATGTTGGCCAGGCTGGTCTC  3848

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 3849  GAATGCCTGGCCTCAGGTGATCCACCTGCCTTGGCCTCCCAAAGTGCTGGGATTACAGGCATGAACCACCACGC  3922

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 3923  CTGGCCTAAAATGTTTTTAAATAACTGTACTTGTACTCACTCACCCTACCTCCAGGGCATAGTCAGTCTGGGCT  3996

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 3997  GAGATCCCCATGATCAGATATTTGATGGAAAGTCCTGAAAGGCCAATGAGTTGGATGGCAAGAATGCAGGCAGA  4070

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 4071  AGCTGCTGGATAAAATAGGCTACAGCCACCTCAGATGCTTTCAGTGCTCTGTCTGAGGATGTGTATATGCATAT  4144

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 4145  GCAAACTCGACCCCCGTTCCTGCCCAGATAATGGCTCAATAACTCTGAGGCTGGTTGCTCAGCCTCTGAGGGCA  4218

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 4219  ATACAGGCATTTAAAAAATTAAAATGACCAGGCACAGTGGCTCACGCCTGTAATCTCGGCACTTTGGGAGACTG  4292

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 4293  AGGTGGGAGCATCACTTGAGACCAGGAGTTTGGGACCAGGCTGGGCAACACAGGGAGACCCCCTCTCTACAAAA  4366

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 4367  ACATTTTTAAAAAATTAGCTGGGTGTGGTGATGCATGCCTGTGGTCCCAGTTACTTGGGAGGCTGACGTGGGTG  4440

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 4441  GCTCACTTGAGCACAGGAGTTTGAGGCTGCAGTGACCTATGACCACATCACTGTACGCCAGCCCGGGTGAGAGA  4514

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 4515  GGGAGACCCCGTCTCTAAAAATAAAATGTAAAATCACTGAAAAAATGAGTGTTCGGTGAAACAAGTGGGATTTT  4588

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 4589  CTGGGCCAGCAAGTCTTCCAAACTGTATATGATGCATCCTGTCTCCATGTGTAATATATTTTAATGATAAATGT  4662

Query  199  -------------  198
                         
Sbjct 4663  ATTTTTAACAGTG  4675

GPP Web Portal Terms of Service

Effective Date: December 8, 2025
By using this site, you agree to our terms and conditions below.

Overview of Terms

The data made available on this website were generated for research purposes and are not intended for clinical or commercial uses. Commercial use (or other use for profit-making purposes) of the GPP Web Portal and its tools, is not permitted under these terms and may require a separate license agreement from Broad or its contributors. For more information, please contact partnering@broadinstitute.org.

The original data may be subject to rights claimed by third parties, including but not limited to, patent, copyright, other intellectual property rights, biodiversity-related access and benefit-sharing rights. It is the responsibility of users of Broad Institute services to ensure that their use of the data does not infringe any of the rights of such third parties.

Any questions or comments concerning these Terms of Use can be addressed to: legal@broadinstitute.org.

By accessing and viewing this GPP Web Portal, you agree to the following terms and conditions:

Attribution

You agree to acknowledge the Broad Institute (e.g., in publications, services or products) for any of your use of its online services, databases or software in accordance with good scientific practice. You agree to use the acknowledgment wording provided for the relevant tools as indicated on the FAQ for each tool.

Updating the Terms of Use

We reserve the right to update these Terms of Use at any time. When alterations are inevitable, we will attempt to give reasonable notice of any changes by placing a notice on our website, but you may wish to check each time you use the website. The date of the most recent revision will appear on this, the "GPP Web Portal Terms of Use" page. If you do not agree to these changes, please do not continue to use our online services. We will also make available an archived copy of the previous Terms of Use for comparison.

Indemnification and Disclaimer of Warranties

You are using this GPP Web Portal at your own risk, and you hereby agree to hold Broad and its contributors and their trustees, directors, officers, employees, and affiliated investigators harmless for any third party claims which may arise from your use of the GPP Web Portal, the tools available therein, or any portion thereof. Further, you agree to indemnify Broad, its contributors, and its and their trustees, directors, officers, employees, affiliated investigators, students, and affiliates for any loss, costs, claims, damages, or other liabilities arising from any unpermitted commercial or profit-making use you make of the GPP Web Portal. The GPP Web Portal is a research tool and is provided "as is". Broad does not represent that the GPP Web Portal is free of errors or bugs or suitable for any particular tasks.

ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS ARE DISCLAIMED. IN NO EVENT SHALL BROAD OR ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE GPP WEB PORTAL, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Governing Law

The terms and conditions herein shall be construed, governed, interpreted, and applied in accordance with the internal laws of the Commonwealth of Massachusetts, U.S.A. Furthermore, by accessing, downloading, or using the Database, You consent to the personal jurisdiction of, and venue in, the state and federal courts within Massachusetts with respect to Your download or use of the Database.