Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_11616
- Subject:
- XR_001737527.1
- Aligned Length:
- 4102
- Identities:
- 173
- Gaps:
- 3904
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GGGTGGAAGGAAGAGGAAGAGGGTCTGGGCGATGGTGCATCCGGGACGAGCCTCCAGAGACCAAGCGGGATAGA 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 TACCCCATGTTTCCCCATCACTCGAGGAGTCTGGGCAGAGACTGGACTACACCGTGGGAGAATCTGCAAAGGTG 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 TTGCTGGAACAGACATATTTCTAGTTGTATGAGGTGGCCTGGACATTACTCTCGAGCTCCTTACCCATACTTCA 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 GTAGTAGGCATTTTTCACTAAATTGGAGACCACCCTGTTTGTTTGAGTCTAGAACTCAGTTCCAGTACTGTAAC 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 TGGAGACCTGACAACCTGAGCCAGACATCTTTGATTCATCTCTCTAGTTACGTCATGAACGCTGAGGGAGATGA 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 GCCTTCATCAAAACGAAGAAAACACCAAGGTGTGATAAAGCGGAATTGGGAATATATATGTAGCCATGATAAAG 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 AAAAAACGAAGATCCTAGGAGACAAAAATGTTGATCCCAAATGTGAAGACAGTGAGAACAAGTTTGACTTTTCA 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 GTGATGTCCTATAATATACTTTCACAAGATTTACTGGAAGATAACTCTCACCTTTATAGACATTGCCGGCGGCC 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 AGTATTACACTGGAGTTTTAGGTTTCCCAATATTCTGAAAGAAATTAAACATTTTGATGCAGACGTACTTTGTT 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 TGCAAGAAGTTCAAGAAGATCATTATGGAGCAGAGATCAGGCCAAGTTTGGAATCACTGGGTTATCACTGTGAA 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 TATAAGATGCGGACAGGAAGGAAACCTGATGGCTGTGCTATTTGCTTCAAACATTCCAAATTTTCACTCTTGTC 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 AGTGAACCCAGTGGAATTCTTCCGCCCTGATATTTCTCTGTTGGACAGAGACAATGTTGGATTAGTTTTACTCT 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 TACAGCCCAAAATTCCATATGCTGCCTGCCCTGCAATCTGCGTAGCAAATACGCATCTGTTGTATAATCCAAGG 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 CGAGGTGATATTAAGCTGACGCAATTGGCAATGCTACTGGCAGAGATTTCCAGTGTTGCCCACCAGAAAGATGG 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 CAGCTTCTGCCCTATTGTTATGTGTGGTGACTTTAATTCTGTTCCTGGTTCTCCACTATATAGTTTCATAAAGG 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 AAGGAAAATTGAATTATGAAGGACTTCCCATAGGAAAGACAGTGATCTGACACAAACACAGCTGAAGCAAACAG 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 AGGTCCTAGTGACAGCTGAAAAATTGTCTTCAAATTTACAGCACCATTTCAGTTTGTCATCTGTTTATTCACAT 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 TACTTTCCTGACACTGGAATTCCAGAAGTGACCACCTGTCATTCCCGAAGTGCCATAACTGTGGATTATATTTT 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 CTACTCTGCAGAAAAGGAAGATGTTGCTGGGCACCCAGGAGCTGAAGTTGCTTTGGTTGGTGGCTTGAAACTTC 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 TAGCTAGACTGTCACTTCTTACAGAACAAGACTTATGGACTGTTAATGGACTTCCAAACGAAAATAACTCTTCA 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 GATCATCTGCCTTTATTGGCAAAGTTCAGACTTGAGCTCTGACTCTCTTTGATCACATACTAATTTTCTTTCCA 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 ATTTGTATTGTTTTTCAAAGAATGTAAAGTTCTTAAGTGTATGCATGTTGTTTATTTTTGCACTGTGGAGATTC 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 TGAAGCGGTTATGTTAGATGCTTTGAAACTCCATATCAGAAGAAATAACTTTATAACAATTTTTTTTAATAATG 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 AAAAATATTTTCGTGACAAGTGAGCTCTAAATTCTCTTTATTGTAAAAGAGATGTAAAGGTTTTATATTCTAAA 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 TCCTAGTAAAATTGACAGTGATTTTTAAATATAATGCATCTTCCTTTGTCTGCTTAGTAAAAAATTTCATTTCA 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 TAATTTTGGCAAGCTCTGTAGTGGATCCAAAGTATCTTTGAGTTCTTGCAAACTACAAGTTGTTTCCTTTCCAG 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 AAGGCTTGATTTCATTAGGAGACCCCTCTATTGAGTTCTAAATAGTTTATCTTAGAAAGCCTTGGGTCATTCAC 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 AGGTATCCAACCAGCCATTGTTTAGTTTGTTTTTGAAGGGGTTTGATAATGCTTTTTAAGTTGTACAGAATGCT 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 TAATCCATCTTATTACTGTCCTGAGCCATGTAATATGCCTGCATCGTGTTGGGGAAATGTTTGGGAAATATAAG 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 CCAGCATAACGTGTAAAGCTCACTCTTTCACCCTGGAACAGACAAGAGGTGGGCTTAATAGAGGCAGAGACTGG 2220
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2221 GGATATACCTTTGTTTCCCTAGCATTTTTATTTATTTATTTTTATTTTATTTTATTTTTTGAGATGGAGTTTCA 2294
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2295 CTCTTGTTGCCCAGGCTGGGGGTGCAATGGCGCAATCTTTGCTCACTGCAACCCCTGCCTCCCGGGCTCAAGCG 2368
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2369 ATTCTCCTGCCTCAGCCTCTCGAGTAGCTGGGATTACAGGCATGCGTCACCACTCCCAGCTAATTTTGTATTTT 2442
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2443 CAGTAGAGACAGGGTTTCCCCATGTTGGTTAGGCTGGTCTCGAACTCCCAACCTCAGGTGATCCGCCCACCTCA 2516
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2517 GCTCTCAAAGTGCTGGGATTACAGGCGGGAGCCACTGCACATGGCAGCATTTTTTAAAAATTCAGTTTTAAGAT 2590
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2591 CTCTGGTTTAGGGGAGAGATTTTATTTTACTGAACCAGTTCTATAGAAATTTATTTTATTAGGAAATTTGTCTT 2664
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2665 TGGAACAAAGTGGCAGCTATAAAATTATTTTTGTTAAGCCTCAGAAATATGAGGAAGCCTGTAAAACTCTAGTG 2738
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2739 GGGAGATATTAACTTGGAGACCTAATGCTCTGTAAATAGTCATTTAAACTGTTGGTTTTAGTGGTTTTGTTTCT 2812
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2813 AAAATGTTTTCTTTTACCGTGATGCACCAGTATGAGATGGTGCTGACACTTTCTATGAAGTGGTTATGAGCAGG 2886
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2887 TTTAATAAATCCTCTATACAAGTGTTTGAATCAATTTTAAAACATAAAAAGTGGAAATTTCCTTTTTTGTAGAC 2960
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2961 AGTAGGAACAAGGAATTATATGCATTTTTACTAAGTAGTAATTTTACACTGAATTGTAAATGTTTTTACAGTGA 3034
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3035 GTTTTATTAATAGAATGCTTCACCTTAAATTGGAAAACAATAATAGTCTTGGACTAAGTCTTTGTACTAAAGCA 3108
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3109 TTTGCTATAATTATTTTTAAAAAAACAAACAGATGAAAACCTCAGAGAAGGCATGTGGATTATAAGATTTGTCT 3182
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3183 AGTAAAAATTGTAATTGAATATGTTTAAATATTTAATTTCTCATTTTGGGGGGTTTTTATTTTTTTATTTTTTA 3256
Query 1 -ATGGAGTCTCACTCTGTCACCCAGGCTGGAGTGCAGTGGCGTGATCTTGGCTCACTGCAACCTCTGCCTCCTG 73
||||.|||||||.||.||.||||||||||||||||||||||.||.||.||||||||||||||||.||||||||
Sbjct 3257 GATGGTGTCTCACGCTATCGCCCAGGCTGGAGTGCAGTGGCGCGAACTCGGCTCACTGCAACCTCCGCCTCCTG 3330
Query 74 GGTTCAAGCAATTCTCCCACCTCAGCCTCCCAAGTAGCTGGGATTACAGACGTGTGCCACCATACCTGGGTAAT 147
|||||||||||||||||..||||||||||||||||||||||||||||||.|.||..|||||||.||..|.||||
Sbjct 3331 GGTTCAAGCAATTCTCCTTCCTCAGCCTCCCAAGTAGCTGGGATTACAGGCATGCACCACCATGCCCAGCTAAT 3404
Query 148 TTTTGCATTTTTAGTGGAGAGGGAGTTTCACCATGTTGGCCAGGTTGGTCT----------------------- 198
|||||.|||||||||.||||.|||.|||..||||||||||||||.||||||
Sbjct 3405 TTTTGTATTTTTAGTAGAGATGGAATTTTGCCATGTTGGCCAGGCTGGTCTTGAACTCCTGACCTCAGGGGTGA 3478
Query 199 -------------------------------------------------------------------------- 198
Sbjct 3479 TCCACCCGCCTCGGGCTCCCAAAGTGCTGTGATTACAGGCATGAGCCACCATGCCTGGCCTTTGGGGGGATTTT 3552
Query 199 -------------------------------------------------------------------------- 198
Sbjct 3553 AATTACAGTATTAATTATAGTTCTAGGATTTCCCACATTTTATAGTAGTAGTTTGCAGGATATTATGTGCCCTA 3626
Query 199 -------------------------------------------------------------------------- 198
Sbjct 3627 ATTAGCAGATATAGACATTATCAAATTATAATGATAGTATAATTATCCCTTTTTAATATTGGGGAAAGAAAAAT 3700
Query 199 -------------------------------------------------------------------------- 198
Sbjct 3701 GAAAATTCATTAGTTAATTACTGCTTTGTGTTGTGTGAATTTATTAACAAATAACATTATTACATATAGGTCAT 3774
Query 199 -------------------------------------------------------------------------- 198
Sbjct 3775 TGTTAACAAACAAACATCCCTGAAAACCTCTGTGAAAATTTAATTTTTTATATCCTGATTAATATATTGTGACT 3848
Query 199 -------------------------------------------------------------------------- 198
Sbjct 3849 TTAGGCCCATTTTTCATGTGCTTCACTTTGATAGAGTTAATCCATAAAATTGCTCTTTACTTTAGCTTATCAAA 3922
Query 199 -------------------------------------------------------------------------- 198
Sbjct 3923 TGAAGTATTATTTTGTGGACTGGAGGCCAAAAAGTCAATGTGAGCTTCTCACAGGTTTTTAAAGCTCCACTAAA 3996
Query 199 -------------------------------------------------------------------------- 198
Sbjct 3997 AATAATTATCCACTTGTCTTTACTTTTGTTGACCAGAATAGTTGGTAACTCTGCCAGAGCCTGTACTTACCTGC 4070
Query 199 -------------------------------- 198
Sbjct 4071 CAAAAACAATTAAATCTGGTTAATGCCTGAAA 4102
