Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_11616
- Subject:
- XR_001737528.1
- Aligned Length:
- 4259
- Identities:
- 173
- Gaps:
- 4061
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GAAGAGGAAGAGGGTCTGGGCGATGGTGCATCCGGGACGAGCCTCCAGAGACCAAGCGGGATAGGTAAACCCGC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 CGCGCAGCTGGCGGGACGCTGGGCCAACGAGGTCTGGGGTCTTGGCGCGGAGTTCATGGGCCGCCGGCCAGGCT 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 TGTGCCAGTGGCTTTGGATCCCTGGCCTGCTTCCCCCAACCCAGCCTCCAGACCAGCGCTGGCCTGCTCCACAC 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 ACTCCGCAGCACCGTCCCGGGAACCGAGCGTCGGCGGGGAGGCCGCCTCTCCGCAGTGTGATAAAGCGGAATTG 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 GGAATATATATGTAGCCATGATAAAGAAAAAACGAAGATCCTAGGAGACAAAAATGTTGATCCCAAATGTGAAG 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 ACAGTGAGAACAAGTTTGACTTTTCAGTGATGTCCTATAATATACTTTCACAAGATTTACTGGAAGATAACTCT 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 CACCTTTATAGACATTGCCGGCGGCCAGTATTACACTGGAGTTTTAGGTTTCCCAATATTCTGAAAGAAATTAA 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 ACATTTTGATGCAGACGTACTTTGTTTGCAAGAAGTTCAAGAAGATCATTATGGAGCAGAGATCAGGCCAAGTT 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 TGGAATCACTGGGTTATCACTGTGAATATAAGATGCGGACAGGAAGGAAACCTGATGGCTGTGCTATTTGCTTC 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 AAACATTCCAAATTTTCACTCTTGTCAGTGAACCCAGTGGAATTCTTCCGCCCTGATATTTCTCTGTTGGACAG 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 AGACAATGTTGGATTAGTTTTACTCTTACAGCCCAAAATTCCATATGCTGCCTGCCCTGCAATCTGCGTAGCAA 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 ATACGCATCTGTTGTATAATCCAAGGCGAGGTGATATTAAGCTGACGCAATTGGCAATGCTACTGGCAGAGATT 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 TCCAGTGTTGCCCACCAGAAAGATGGCAGCTTCTGCCCTATTGTTATGTGTGGTGACTTTAATTCTGTTCCTGG 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 TTCTCCACTATATAGTTTCATAAAGGAAGGAAAATTGAATTATGAAGGACTTCCCATAGGAAAGACAGTGATCT 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 GACACAAACACAGCTGAAGCAAACAGAGGTCCTAGTGACAGCTGAAAAATTGTCTTCAAATTTACAGCACCATT 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 TCAGTTTGTCATCTGTTTATTCACATTACTTTCCTGACACTGGAATTCCAGAAGTGACCACCTGTCATTCCCGA 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 AGTGCCATAACTGTGGATTATATTTTCTACTCTGCAGAAAAGGAAGATGTTGCTGGGCACCCAGGAGCTGAAGT 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 TGCTTTGGTTGGTGGCTTGAAACTTCTAGCTAGACTGTCACTTCTTACAGAACAAGACTTATGGACTGTTAATG 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 GACTTCCAAACGAAAATAACTCTTCAGATCATCTGCCTTTATTGGCAAAGTTCAGACTTGAGCTCTGACTCTCT 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 TTGATCACATACTAATTTTCTTTCCAATTTGTATTGTTTTTCAAAGAATGTAAAGTTCTTAAGTGTATGCATGT 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 TGTTTATTTTTGCACTGTGGAGATTCTGAAGCGGTTATGTTAGATGCTTTGAAACTCCATATCAGAAGAAATAA 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 CTTTATAACAATTTTTTTTAATAATGAAAAATATTTTCGTGACAAGTGAGCTCTAAATTCTCTTTATTGTAAAA 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 GAGATGTAAAGGTTTTATATTCTAAATCCTAGTAAAATTGACAGTGATTTTTAAATATAATGCATCTTCCTTTG 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 TCTGCTTAGTAAAAAATTTCATTTCATAATTTTGGCAAGCTCTGTAGTGGATCCAAAGTATCTTTGAGTTCTTG 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 CAAACTACAAGTTGTTTCCTTTCCAGAAGGCTTGATTTCATTAGGAGACCCCTCTATTGAGTTCTAAATAGTTT 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 ATCTTAGAAAGCCTTGGGTCATTCACAGGTATCCAACCAGCCATTGTTTAGTTTGTTTTTGAAGGGGTTTGATA 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 ATGCTTTTTAAGTTGTACAGAATGCTTAATCCATCTTATTACTGTCCTGAGCCATGTAATATGCCTGCATCGTG 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 TTGGGGAAATGTTTGGGAAATATAAGCCAGCATAACGTGTAAAGCTCACTCTTTCACCCTGGAACAGACAAGAG 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 GTGGGCTTAATAGAGGCAGAGACTGGGGATATACCTTTGTTTCCCTAGCATTTTTATTTATTTATTTTTATTTT 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 ATTTTATTTTTTGAGATGGAGTTTCACTCTTGTTGCCCAGGCTGGGGGTGCAATGGCGCAATCTTTGCTCACTG 2220
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2221 CAACCCCTGCCTCCCGGGCTCAAGCGATTCTCCTGCCTCAGCCTCTCGAGTAGCTGGGATTACAGGCATGCGTC 2294
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2295 ACCACTCCCAGCTAATTTTGTATTTTCAGTAGAGACAGGGTTTCCCCATGTTGGTTAGGCTGGTCTCGAACTCC 2368
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2369 CAACCTCAGGTGATCCGCCCACCTCAGCTCTCAAAGTGCTGGGATTACAGGCGGGAGCCACTGCACATGGCAGC 2442
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2443 ATTTTTTAAAAATTCAGTTTTAAGATCTCTGGTTTAGGGGAGAGATTTTATTTTACTGAACCAGTTCTATAGAA 2516
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2517 ATTTATTTTATTAGGAAATTTGTCTTTGGAACAAAGTGGCAGCTATAAAATTATTTTTGTTAAGCCTCAGAAAT 2590
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2591 ATGAGGAAGCCTGTAAAACTCTAGTGGGGAGATATTAACTTGGAGACCTAATGCTCTGTAAATAGTCATTTAAA 2664
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2665 CTGTTGGTTTTAGTGGTTTTGTTTCTAAAATGTTTTCTTTTACCGTGATGCACCAGTATGAGATGGTGCTGACA 2738
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2739 CTTTCTATGAAGTGGTTATGAGCAGGTTTAATAAATCCTCTATACAAGTGTTTGAATCAATTTTAAAACATAAA 2812
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2813 AAGTGGAAATTTCCTTTTTTGTAGACAGTAGGAACAAGGAATTATATGCATTTTTACTAAGTAGTAATTTTACA 2886
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2887 CTGAATTGTAAATGTTTTTACAGTGAGTTTTATTAATAGAATGCTTCACCTTAAATTGGAAAACAATAATAGTC 2960
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2961 TTGGACTAAGTCTTTGTACTAAAGCATTTGCTATAATTATTTTTAAAAAAACAAACAGATGAAAACCTCAGAGA 3034
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3035 AGGCATGTGGATTATAAGATTTGTCTAGTAAAAATTGTAATTGAATATGTTTAAATATTTAATTTCTCATTTTG 3108
Query 1 ---------------------------ATGGAGTCTCACTCTGTCACCCAGGCTGGAGTGCAGTGGCGTGATCT 47
||||.|||||||.||.||.||||||||||||||||||||||.||.||
Sbjct 3109 GGGGGTTTTTATTTTTTTATTTTTTAGATGGTGTCTCACGCTATCGCCCAGGCTGGAGTGCAGTGGCGCGAACT 3182
Query 48 TGGCTCACTGCAACCTCTGCCTCCTGGGTTCAAGCAATTCTCCCACCTCAGCCTCCCAAGTAGCTGGGATTACA 121
.||||||||||||||||.|||||||||||||||||||||||||..|||||||||||||||||||||||||||||
Sbjct 3183 CGGCTCACTGCAACCTCCGCCTCCTGGGTTCAAGCAATTCTCCTTCCTCAGCCTCCCAAGTAGCTGGGATTACA 3256
Query 122 GACGTGTGCCACCATACCTGGGTAATTTTTGCATTTTTAGTGGAGAGGGAGTTTCACCATGTTGGCCAGGTTGG 195
|.|.||..|||||||.||..|.|||||||||.|||||||||.||||.|||.|||..||||||||||||||.|||
Sbjct 3257 GGCATGCACCACCATGCCCAGCTAATTTTTGTATTTTTAGTAGAGATGGAATTTTGCCATGTTGGCCAGGCTGG 3330
Query 196 TCT----------------------------------------------------------------------- 198
|||
Sbjct 3331 TCTTGAACTCCTGACCTCAGGGGTGATCCACCCGCCTCGGGCTCCCAAAGTGCTGTGATTACAGGCATGAGCCA 3404
Query 199 -------------------------------------------------------------------------- 198
Sbjct 3405 CCATGCCTGGCCTTTGGGGGGATTTTAATTACAGTATTAATTATAGTTCTAGGATTTCCCACATTTTATAGTAG 3478
Query 199 -------------------------------------------------------------------------- 198
Sbjct 3479 TAGTTTGCAGGATATTATGTGCCCTAATTAGCAGATATAGACATTATCAAATTATAATGATAGTATAATTATCC 3552
Query 199 -------------------------------------------------------------------------- 198
Sbjct 3553 CTTTTTAATATTGGGGAAAGAAAAATGAAAATTCATTAGTTAATTACTGCTTTGTGTTGTGTGAATTTATTAAC 3626
Query 199 -------------------------------------------------------------------------- 198
Sbjct 3627 AAATAACATTATTACATATAGGTCATTGTTAACAAACAAACATCCCTGAAAACCTCTGTGAAAATTTAATTTTT 3700
Query 199 -------------------------------------------------------------------------- 198
Sbjct 3701 TATATCCTGATTAATATATTGTGACTTTAGGCCCATTTTTCATGTGCTTCACTTTGATAGAGTTAATCCATAAA 3774
Query 199 -------------------------------------------------------------------------- 198
Sbjct 3775 ATTGCTCTTTACTTTAGCTTATCAAATGAAGTATTATTTTGTGGACTGGAGGCCAAAAAGTCAATGTGAGCTTC 3848
Query 199 -------------------------------------------------------------------------- 198
Sbjct 3849 TCACAGGTTTTTAAAGCTCCACTAAAAATAATTATCCACTTGTCTTTACTTTTGTTGACCAGAATAGTTGGTAA 3922
Query 199 -------------------------------------------------------------------------- 198
Sbjct 3923 CTCTGCCAGAGCCTGTACTTACCTGCCAAAAACAATTAAATCTGGTTAATGCCTGAAACCAAATCTCTCAGTCT 3996
Query 199 -------------------------------------------------------------------------- 198
Sbjct 3997 CAAGTGTTATACTATCCAAGTTTTAAATGGAAAGGTAAACTGTGGAGTAATGAAATTTTGGTTTTACTGTACCT 4070
Query 199 -------------------------------------------------------------------------- 198
Sbjct 4071 TTTGCTATCAAGATAATATTCATGTTTGAAATCTTGTCTTTATTTGGAATTTAGTTACTGTCTGCTTTTAACCT 4144
Query 199 -------------------------------------------------------------------------- 198
Sbjct 4145 TTGCTTTCCTAAAGAAAGTTTGAGATCCAGAGAGTTCAAGGGATTGGGGAAAGAGAGGCGTCAAGTCATTTGCA 4218
Query 199 ----------------------------------------- 198
Sbjct 4219 CTTTGTACCTGTAAGTTAGGTAATAAACTATTATACTCGTA 4259
