Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_11616
- Subject:
- XR_001737531.1
- Aligned Length:
- 4812
- Identities:
- 173
- Gaps:
- 4614
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 TCAGGGACTCTGACTGCGCAAGATGGAGTGTAGGCCGGCCGGCGAGACTGCACCTCCCAGCATGCCTTGCAGCC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 AGGACTGGAGTCGGTACTTAAGAGTGATGGGGTTCCCTAGATACTTTAGGCCGTCGCATCGATTATAGAGATTG 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 AGGTGGAACCCGGGGCCTGGGAACTGGACGCACGCGGAGGGCGAAGATGGAAGCCTGGCGCTGTGTGAGGAAGG 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 GCTACGGCCACTGTGTGGTGGGAAGAGGCCGATACCCCATGTTTCCCCATCACTCGAGGAGTCTGGGCAGAGAC 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 TGGACTACACCGTGGGAGAATCTGCAAAGGTGTTGCTGGAACAGACATATTTCTAGTTGTATGAGGTGGCCTGG 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 ACATTACTCTCGAGCTCCTTACCCATACTTCAGTAGTAGGCATTTTTCACTAAATTGGAGACCACCCTGTTTGT 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 TTGAGTCTAGAACTCAGTTCCAGTACTGTAACTGGAGACCTGACAACCTGAGCCAGACATCTTTGATTCATCTC 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 TCTAGTTACGTCATGAACGCTGAGGGAGATGAGCCTTCATCAAAACGAAGAAAACACCAAGGTGTTGTGAATAA 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 GGAAAATGCTCTTCGTTAAGCCATATTTGTGACTTCCGATATTTCACTAATACTTTTCAATCAAGAAAACAGCA 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 TTGCTAACTTGCCTATCACTTTAAAGTGGTATTTGAAGGATTTGTGTGATACAATTATGACTTTGTAATTAGGC 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 ACCCTAAAAACCTGATCAGGCCTATTGCTTACTTTCTTTGATTCATCTGTCTTCTCTGCTGTGATCACCTTGTT 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 CCTCCTGATATGGAAGGTGTGATAAAGCGGAATTGGGAATATATATGTAGCCATGATAAAGAAAAAACGAAGAT 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 CCTAGGAGACAAAAATGTTGATCCCAAATGTGAAGACAGTGAGAACAAGTTTGACTTTTCAGTGATGTCCTATA 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 ATATACTTTCACAAGATTTACTGGAAGATAACTCTCACCTTTATAGACATTGCCGGCGGCCAGTATTACACTGG 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 AGTTTTAGGTTTCCCAATATTCTGAAAGAAATTAAACATTTTGATGCAGACGTACTTTGTTTGCAAGAAGTTCA 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 AGAAGATCATTATGGAGCAGAGATCAGGCCAAGTTTGGAATCACTGGGTTATCACTGTGAATATAAGATGCGGA 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 CAGGAAGGAAACCTGATGGCTGTGCTATTTGCTTCAAACATTCCAAATTTTCACTCTTGTCAGTGAACCCAGTG 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 GAATTCTTCCGCCCTGATATTTCTCTGTTGGACAGAGACAATGTTGGATTAGTTTTACTCTTACAGCCCAAAAT 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 TCCATATGCTGCCTGCCCTGCAATCTGCGTAGCAAATACGCATCTGTTGTATAATCCAAGGCGAGGTGATATTA 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 AGCTGACGCAATTGGCAATGCTACTGGCAGAGATTTCCAGTGTTGCCCACCAGAAAGATGGCAGCTTCTGCCCT 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 ATTGTTATGTGTGGTGACTTTAATTCTGTTCCTGGTTCTCCACTATATAGTTTCATAAAGGAAGGAAAATTGAA 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 TTATGAAGGACTTCCCATAGGAAAGACAGTGATCTGACACAAACACAGCTGAAGCAAACAGAGGTCCTAGTGAC 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 AGCTGAAAAATTGTCTTCAAATTTACAGCACCATTTCAGTTTGTCATCTGTTTATTCACATTACTTTCCTGACA 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 CTGGAATTCCAGAAGTGACCACCTGTCATTCCCGAAGTGCCATAACTGTGGATTATATTTTCTACTCTGCAGAA 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 AAGGAAGATGTTGCTGGGCACCCAGGAGCTGAAGTTGCTTTGGTTGGTGGCTTGAAACTTCTAGCTAGACTGTC 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 ACTTCTTACAGAACAAGACTTATGGACTGTTAATGGACTTCCAAACGAAAATAACTCTTCAGATCATCTGCCTT 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 TATTGGCAAAGTTCAGACTTGAGCTCTGACTCTCTTTGATCACATACTAATTTTCTTTCCAATTTGTATTGTTT 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 TTCAAAGAATGTAAAGTTCTTAAGTGTATGCATGTTGTTTATTTTTGCACTGTGGAGATTCTGAAGCGGTTATG 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 TTAGATGCTTTGAAACTCCATATCAGAAGAAATAACTTTATAACAATTTTTTTTAATAATGAAAAATATTTTCG 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 TGACAAGTGAGCTCTAAATTCTCTTTATTGTAAAAGAGATGTAAAGGTTTTATATTCTAAATCCTAGTAAAATT 2220
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2221 GACAGTGATTTTTAAATATAATGCATCTTCCTTTGTCTGCTTAGTAAAAAATTTCATTTCATAATTTTGGCAAG 2294
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2295 CTCTGTAGTGGATCCAAAGTATCTTTGAGTTCTTGCAAACTACAAGTTGTTTCCTTTCCAGAAGGCTTGATTTC 2368
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2369 ATTAGGAGACCCCTCTATTGAGTTCTAAATAGTTTATCTTAGAAAGCCTTGGGTCATTCACAGGTATCCAACCA 2442
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2443 GCCATTGTTTAGTTTGTTTTTGAAGGGGTTTGATAATGCTTTTTAAGTTGTACAGAATGCTTAATCCATCTTAT 2516
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2517 TACTGTCCTGAGCCATGTAATATGCCTGCATCGTGTTGGGGAAATGTTTGGGAAATATAAGCCAGCATAACGTG 2590
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2591 TAAAGCTCACTCTTTCACCCTGGAACAGACAAGAGGTGGGCTTAATAGAGGCAGAGACTGGGGATATACCTTTG 2664
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2665 TTTCCCTAGCATTTTTATTTATTTATTTTTATTTTATTTTATTTTTTGAGATGGAGTTTCACTCTTGTTGCCCA 2738
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2739 GGCTGGGGGTGCAATGGCGCAATCTTTGCTCACTGCAACCCCTGCCTCCCGGGCTCAAGCGATTCTCCTGCCTC 2812
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2813 AGCCTCTCGAGTAGCTGGGATTACAGGCATGCGTCACCACTCCCAGCTAATTTTGTATTTTCAGTAGAGACAGG 2886
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2887 GTTTCCCCATGTTGGTTAGGCTGGTCTCGAACTCCCAACCTCAGGTGATCCGCCCACCTCAGCTCTCAAAGTGC 2960
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2961 TGGGATTACAGGCGGGAGCCACTGCACATGGCAGCATTTTTTAAAAATTCAGTTTTAAGATCTCTGGTTTAGGG 3034
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3035 GAGAGATTTTATTTTACTGAACCAGTTCTATAGAAATTTATTTTATTAGGAAATTTGTCTTTGGAACAAAGTGG 3108
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3109 CAGCTATAAAATTATTTTTGTTAAGCCTCAGAAATATGAGGAAGCCTGTAAAACTCTAGTGGGGAGATATTAAC 3182
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3183 TTGGAGACCTAATGCTCTGTAAATAGTCATTTAAACTGTTGGTTTTAGTGGTTTTGTTTCTAAAATGTTTTCTT 3256
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3257 TTACCGTGATGCACCAGTATGAGATGGTGCTGACACTTTCTATGAAGTGGTTATGAGCAGGTTTAATAAATCCT 3330
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3331 CTATACAAGTGTTTGAATCAATTTTAAAACATAAAAAGTGGAAATTTCCTTTTTTGTAGACAGTAGGAACAAGG 3404
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3405 AATTATATGCATTTTTACTAAGTAGTAATTTTACACTGAATTGTAAATGTTTTTACAGTGAGTTTTATTAATAG 3478
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3479 AATGCTTCACCTTAAATTGGAAAACAATAATAGTCTTGGACTAAGTCTTTGTACTAAAGCATTTGCTATAATTA 3552
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3553 TTTTTAAAAAAACAAACAGATGAAAACCTCAGAGAAGGCATGTGGATTATAAGATTTGTCTAGTAAAAATTGTA 3626
Query 1 --------------------------------------------------------------ATGGAGTCTCAC 12
||||.|||||||
Sbjct 3627 ATTGAATATGTTTAAATATTTAATTTCTCATTTTGGGGGGTTTTTATTTTTTTATTTTTTAGATGGTGTCTCAC 3700
Query 13 TCTGTCACCCAGGCTGGAGTGCAGTGGCGTGATCTTGGCTCACTGCAACCTCTGCCTCCTGGGTTCAAGCAATT 86
.||.||.||||||||||||||||||||||.||.||.||||||||||||||||.|||||||||||||||||||||
Sbjct 3701 GCTATCGCCCAGGCTGGAGTGCAGTGGCGCGAACTCGGCTCACTGCAACCTCCGCCTCCTGGGTTCAAGCAATT 3774
Query 87 CTCCCACCTCAGCCTCCCAAGTAGCTGGGATTACAGACGTGTGCCACCATACCTGGGTAATTTTTGCATTTTTA 160
||||..||||||||||||||||||||||||||||||.|.||..|||||||.||..|.|||||||||.|||||||
Sbjct 3775 CTCCTTCCTCAGCCTCCCAAGTAGCTGGGATTACAGGCATGCACCACCATGCCCAGCTAATTTTTGTATTTTTA 3848
Query 161 GTGGAGAGGGAGTTTCACCATGTTGGCCAGGTTGGTCT------------------------------------ 198
||.||||.|||.|||..||||||||||||||.||||||
Sbjct 3849 GTAGAGATGGAATTTTGCCATGTTGGCCAGGCTGGTCTTGAACTCCTGACCTCAGGGGTGATCCACCCGCCTCG 3922
Query 199 -------------------------------------------------------------------------- 198
Sbjct 3923 GGCTCCCAAAGTGCTGTGATTACAGGCATGAGCCACCATGCCTGGCCTTTGGGGGGATTTTAATTACAGTATTA 3996
Query 199 -------------------------------------------------------------------------- 198
Sbjct 3997 ATTATAGTTCTAGGATTTCCCACATTTTATAGTAGTAGTTTGCAGGATATTATGTGCCCTAATTAGCAGATATA 4070
Query 199 -------------------------------------------------------------------------- 198
Sbjct 4071 GACATTATCAAATTATAATGATAGTATAATTATCCCTTTTTAATATTGGGGAAAGAAAAATGAAAATTCATTAG 4144
Query 199 -------------------------------------------------------------------------- 198
Sbjct 4145 TTAATTACTGCTTTGTGTTGTGTGAATTTATTAACAAATAACATTATTACATATAGGTCATTGTTAACAAACAA 4218
Query 199 -------------------------------------------------------------------------- 198
Sbjct 4219 ACATCCCTGAAAACCTCTGTGAAAATTTAATTTTTTATATCCTGATTAATATATTGTGACTTTAGGCCCATTTT 4292
Query 199 -------------------------------------------------------------------------- 198
Sbjct 4293 TCATGTGCTTCACTTTGATAGAGTTAATCCATAAAATTGCTCTTTACTTTAGCTTATCAAATGAAGTATTATTT 4366
Query 199 -------------------------------------------------------------------------- 198
Sbjct 4367 TGTGGACTGGAGGCCAAAAAGTCAATGTGAGCTTCTCACAGGTTTTTAAAGCTCCACTAAAAATAATTATCCAC 4440
Query 199 -------------------------------------------------------------------------- 198
Sbjct 4441 TTGTCTTTACTTTTGTTGACCAGAATAGTTGGTAACTCTGCCAGAGCCTGTACTTACCTGCCAAAAACAATTAA 4514
Query 199 -------------------------------------------------------------------------- 198
Sbjct 4515 ATCTGGTTAATGCCTGAAACCAAATCTCTCAGTCTCAAGTGTTATACTATCCAAGTTTTAAATGGAAAGGTAAA 4588
Query 199 -------------------------------------------------------------------------- 198
Sbjct 4589 CTGTGGAGTAATGAAATTTTGGTTTTACTGTACCTTTTGCTATCAAGATAATATTCATGTTTGAAATCTTGTCT 4662
Query 199 -------------------------------------------------------------------------- 198
Sbjct 4663 TTATTTGGAATTTAGTTACTGTCTGCTTTTAACCTTTGCTTTCCTAAAGAAAGTTTGAGATCCAGAGAGTTCAA 4736
Query 199 -------------------------------------------------------------------------- 198
Sbjct 4737 GGGATTGGGGAAAGAGAGGCGTCAAGTCATTTGCACTTTGTACCTGTAAGTTAGGTAATAAACTATTATACTCG 4810
Query 199 -- 198
Sbjct 4811 TA 4812
