Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_11616
- Subject:
- XR_001737532.1
- Aligned Length:
- 4811
- Identities:
- 173
- Gaps:
- 4613
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GTGCATCCGGGACGAGCCTCCAGAGACCAAGCGGGATAGGTAAACCCGCCGCGCAGCTGGCGGGACGCTGGGCC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 AACGAGGTCTGGGGTCTTGGCGCGGAGTTCATGGGCCGCCGGCCAGGCTTGTGCCAGTGGCTTTGGATCCCTGG 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 CCTGCTTCCCCCAACCCAGCCTCCAGACCAGCGCTGGCCTGCTCCACACACTCCGCAGCACCGTCCCGGGAACC 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 GAGCGTCGGCGGGGAGGCCGCCTCTCCGCAATACCCCATGTTTCCCCATCACTCGAGGAGTCTGGGCAGAGACT 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 GGACTACACCGTGGGAGAATCTGCAAAGGTGTTGCTGGAACAGACATATTTCTAGTTGTATGAGGTGGCCTGGA 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 CATTACTCTCGAGCTCCTTACCCATACTTCAGTAGTAGGCATTTTTCACTAAATTGGAGACCACCCTGTTTGTT 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 TGAGTCTAGAACTCAGTTCCAGTACTGTAACTGGAGACCTGACAACCTGAGCCAGACATCTTTGATTCATCTCT 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 CTAGTTACGTCATGAACGCTGAGGGAGATGAGCCTTCATCAAAACGAAGAAAACACCAAGGTGTTGTGAATAAG 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 GAAAATGCTCTTCGTTAAGCCATATTTGTGACTTCCGATATTTCACTAATACTTTTCAATCAAGAAAACAGCAT 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 TGCTAACTTGCCTATCACTTTAAAGTGGTATTTGAAGGATTTGTGTGATACAATTATGACTTTGTAATTAGGCA 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 CCCTAAAAACCTGATCAGGCCTATTGCTTACTTTCTTTGATTCATCTGTCTTCTCTGCTGTGATCACCTTGTTC 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 CTCCTGATATGGAAGGTGTGATAAAGCGGAATTGGGAATATATATGTAGCCATGATAAAGAAAAAACGAAGATC 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 CTAGGAGACAAAAATGTTGATCCCAAATGTGAAGACAGTGAGAACAAGTTTGACTTTTCAGTGATGTCCTATAA 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 TATACTTTCACAAGATTTACTGGAAGATAACTCTCACCTTTATAGACATTGCCGGCGGCCAGTATTACACTGGA 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 GTTTTAGGTTTCCCAATATTCTGAAAGAAATTAAACATTTTGATGCAGACGTACTTTGTTTGCAAGAAGTTCAA 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 GAAGATCATTATGGAGCAGAGATCAGGCCAAGTTTGGAATCACTGGGTTATCACTGTGAATATAAGATGCGGAC 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 AGGAAGGAAACCTGATGGCTGTGCTATTTGCTTCAAACATTCCAAATTTTCACTCTTGTCAGTGAACCCAGTGG 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 AATTCTTCCGCCCTGATATTTCTCTGTTGGACAGAGACAATGTTGGATTAGTTTTACTCTTACAGCCCAAAATT 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 CCATATGCTGCCTGCCCTGCAATCTGCGTAGCAAATACGCATCTGTTGTATAATCCAAGGCGAGGTGATATTAA 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 GCTGACGCAATTGGCAATGCTACTGGCAGAGATTTCCAGTGTTGCCCACCAGAAAGATGGCAGCTTCTGCCCTA 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 TTGTTATGTGTGGTGACTTTAATTCTGTTCCTGGTTCTCCACTATATAGTTTCATAAAGGAAGGAAAATTGAAT 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 TATGAAGGACTTCCCATAGGAAAGACAGTGATCTGACACAAACACAGCTGAAGCAAACAGAGGTCCTAGTGACA 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 GCTGAAAAATTGTCTTCAAATTTACAGCACCATTTCAGTTTGTCATCTGTTTATTCACATTACTTTCCTGACAC 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 TGGAATTCCAGAAGTGACCACCTGTCATTCCCGAAGTGCCATAACTGTGGATTATATTTTCTACTCTGCAGAAA 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 AGGAAGATGTTGCTGGGCACCCAGGAGCTGAAGTTGCTTTGGTTGGTGGCTTGAAACTTCTAGCTAGACTGTCA 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 CTTCTTACAGAACAAGACTTATGGACTGTTAATGGACTTCCAAACGAAAATAACTCTTCAGATCATCTGCCTTT 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 ATTGGCAAAGTTCAGACTTGAGCTCTGACTCTCTTTGATCACATACTAATTTTCTTTCCAATTTGTATTGTTTT 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 TCAAAGAATGTAAAGTTCTTAAGTGTATGCATGTTGTTTATTTTTGCACTGTGGAGATTCTGAAGCGGTTATGT 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 TAGATGCTTTGAAACTCCATATCAGAAGAAATAACTTTATAACAATTTTTTTTAATAATGAAAAATATTTTCGT 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 GACAAGTGAGCTCTAAATTCTCTTTATTGTAAAAGAGATGTAAAGGTTTTATATTCTAAATCCTAGTAAAATTG 2220
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2221 ACAGTGATTTTTAAATATAATGCATCTTCCTTTGTCTGCTTAGTAAAAAATTTCATTTCATAATTTTGGCAAGC 2294
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2295 TCTGTAGTGGATCCAAAGTATCTTTGAGTTCTTGCAAACTACAAGTTGTTTCCTTTCCAGAAGGCTTGATTTCA 2368
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2369 TTAGGAGACCCCTCTATTGAGTTCTAAATAGTTTATCTTAGAAAGCCTTGGGTCATTCACAGGTATCCAACCAG 2442
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2443 CCATTGTTTAGTTTGTTTTTGAAGGGGTTTGATAATGCTTTTTAAGTTGTACAGAATGCTTAATCCATCTTATT 2516
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2517 ACTGTCCTGAGCCATGTAATATGCCTGCATCGTGTTGGGGAAATGTTTGGGAAATATAAGCCAGCATAACGTGT 2590
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2591 AAAGCTCACTCTTTCACCCTGGAACAGACAAGAGGTGGGCTTAATAGAGGCAGAGACTGGGGATATACCTTTGT 2664
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2665 TTCCCTAGCATTTTTATTTATTTATTTTTATTTTATTTTATTTTTTGAGATGGAGTTTCACTCTTGTTGCCCAG 2738
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2739 GCTGGGGGTGCAATGGCGCAATCTTTGCTCACTGCAACCCCTGCCTCCCGGGCTCAAGCGATTCTCCTGCCTCA 2812
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2813 GCCTCTCGAGTAGCTGGGATTACAGGCATGCGTCACCACTCCCAGCTAATTTTGTATTTTCAGTAGAGACAGGG 2886
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2887 TTTCCCCATGTTGGTTAGGCTGGTCTCGAACTCCCAACCTCAGGTGATCCGCCCACCTCAGCTCTCAAAGTGCT 2960
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2961 GGGATTACAGGCGGGAGCCACTGCACATGGCAGCATTTTTTAAAAATTCAGTTTTAAGATCTCTGGTTTAGGGG 3034
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3035 AGAGATTTTATTTTACTGAACCAGTTCTATAGAAATTTATTTTATTAGGAAATTTGTCTTTGGAACAAAGTGGC 3108
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3109 AGCTATAAAATTATTTTTGTTAAGCCTCAGAAATATGAGGAAGCCTGTAAAACTCTAGTGGGGAGATATTAACT 3182
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3183 TGGAGACCTAATGCTCTGTAAATAGTCATTTAAACTGTTGGTTTTAGTGGTTTTGTTTCTAAAATGTTTTCTTT 3256
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3257 TACCGTGATGCACCAGTATGAGATGGTGCTGACACTTTCTATGAAGTGGTTATGAGCAGGTTTAATAAATCCTC 3330
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3331 TATACAAGTGTTTGAATCAATTTTAAAACATAAAAAGTGGAAATTTCCTTTTTTGTAGACAGTAGGAACAAGGA 3404
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3405 ATTATATGCATTTTTACTAAGTAGTAATTTTACACTGAATTGTAAATGTTTTTACAGTGAGTTTTATTAATAGA 3478
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3479 ATGCTTCACCTTAAATTGGAAAACAATAATAGTCTTGGACTAAGTCTTTGTACTAAAGCATTTGCTATAATTAT 3552
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3553 TTTTAAAAAAACAAACAGATGAAAACCTCAGAGAAGGCATGTGGATTATAAGATTTGTCTAGTAAAAATTGTAA 3626
Query 1 -------------------------------------------------------------ATGGAGTCTCACT 13
||||.|||||||.
Sbjct 3627 TTGAATATGTTTAAATATTTAATTTCTCATTTTGGGGGGTTTTTATTTTTTTATTTTTTAGATGGTGTCTCACG 3700
Query 14 CTGTCACCCAGGCTGGAGTGCAGTGGCGTGATCTTGGCTCACTGCAACCTCTGCCTCCTGGGTTCAAGCAATTC 87
||.||.||||||||||||||||||||||.||.||.||||||||||||||||.||||||||||||||||||||||
Sbjct 3701 CTATCGCCCAGGCTGGAGTGCAGTGGCGCGAACTCGGCTCACTGCAACCTCCGCCTCCTGGGTTCAAGCAATTC 3774
Query 88 TCCCACCTCAGCCTCCCAAGTAGCTGGGATTACAGACGTGTGCCACCATACCTGGGTAATTTTTGCATTTTTAG 161
|||..||||||||||||||||||||||||||||||.|.||..|||||||.||..|.|||||||||.||||||||
Sbjct 3775 TCCTTCCTCAGCCTCCCAAGTAGCTGGGATTACAGGCATGCACCACCATGCCCAGCTAATTTTTGTATTTTTAG 3848
Query 162 TGGAGAGGGAGTTTCACCATGTTGGCCAGGTTGGTCT------------------------------------- 198
|.||||.|||.|||..||||||||||||||.||||||
Sbjct 3849 TAGAGATGGAATTTTGCCATGTTGGCCAGGCTGGTCTTGAACTCCTGACCTCAGGGGTGATCCACCCGCCTCGG 3922
Query 199 -------------------------------------------------------------------------- 198
Sbjct 3923 GCTCCCAAAGTGCTGTGATTACAGGCATGAGCCACCATGCCTGGCCTTTGGGGGGATTTTAATTACAGTATTAA 3996
Query 199 -------------------------------------------------------------------------- 198
Sbjct 3997 TTATAGTTCTAGGATTTCCCACATTTTATAGTAGTAGTTTGCAGGATATTATGTGCCCTAATTAGCAGATATAG 4070
Query 199 -------------------------------------------------------------------------- 198
Sbjct 4071 ACATTATCAAATTATAATGATAGTATAATTATCCCTTTTTAATATTGGGGAAAGAAAAATGAAAATTCATTAGT 4144
Query 199 -------------------------------------------------------------------------- 198
Sbjct 4145 TAATTACTGCTTTGTGTTGTGTGAATTTATTAACAAATAACATTATTACATATAGGTCATTGTTAACAAACAAA 4218
Query 199 -------------------------------------------------------------------------- 198
Sbjct 4219 CATCCCTGAAAACCTCTGTGAAAATTTAATTTTTTATATCCTGATTAATATATTGTGACTTTAGGCCCATTTTT 4292
Query 199 -------------------------------------------------------------------------- 198
Sbjct 4293 CATGTGCTTCACTTTGATAGAGTTAATCCATAAAATTGCTCTTTACTTTAGCTTATCAAATGAAGTATTATTTT 4366
Query 199 -------------------------------------------------------------------------- 198
Sbjct 4367 GTGGACTGGAGGCCAAAAAGTCAATGTGAGCTTCTCACAGGTTTTTAAAGCTCCACTAAAAATAATTATCCACT 4440
Query 199 -------------------------------------------------------------------------- 198
Sbjct 4441 TGTCTTTACTTTTGTTGACCAGAATAGTTGGTAACTCTGCCAGAGCCTGTACTTACCTGCCAAAAACAATTAAA 4514
Query 199 -------------------------------------------------------------------------- 198
Sbjct 4515 TCTGGTTAATGCCTGAAACCAAATCTCTCAGTCTCAAGTGTTATACTATCCAAGTTTTAAATGGAAAGGTAAAC 4588
Query 199 -------------------------------------------------------------------------- 198
Sbjct 4589 TGTGGAGTAATGAAATTTTGGTTTTACTGTACCTTTTGCTATCAAGATAATATTCATGTTTGAAATCTTGTCTT 4662
Query 199 -------------------------------------------------------------------------- 198
Sbjct 4663 TATTTGGAATTTAGTTACTGTCTGCTTTTAACCTTTGCTTTCCTAAAGAAAGTTTGAGATCCAGAGAGTTCAAG 4736
Query 199 -------------------------------------------------------------------------- 198
Sbjct 4737 GGATTGGGGAAAGAGAGGCGTCAAGTCATTTGCACTTTGTACCTGTAAGTTAGGTAATAAACTATTATACTCGT 4810
Query 199 - 198
Sbjct 4811 A 4811
