Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_11616
- Subject:
- XR_001740369.1
- Aligned Length:
- 4770
- Identities:
- 176
- Gaps:
- 4573
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ACGGGTCGGGGGGCTGTCGGGCGGGGAAACGGGCGCCAATCCCCTGCTGCTCCCTCTCGGAAACCTAGAGGAGG 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GGGCGGAAAGGGGGATGAAGGAGATGGCTCAGTAATAGGATCCAATGGAACATTGCTCTGTAGACTGAAGTGGG 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 ATCTTCTTTCCGGATCCCACGCACAGGGAAGCTGGGCTGTGAGCCAAAGGGAGGAGGCTGGGTGGTGCAGCGGA 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 TGGGGCCCCGAGGACACCGCGAGCCCTGGGTGCTATTGTCAGCCCTTCGCCATTGACTCGCAGTGTGACCTGGG 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 CAAGCTCCAGAACCTCTCTGGGCCTCCTATGACCGGAGATAATACCTCATAGGATGATGGGAGGATTCGATGAA 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 TCAGTACCGTTAAAGCACTTAGTAAATGCTCATTAAACATCATTTGTATTGCTCCAGCTAGGCCACCAACTCTT 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 AGGACCTTGGCAAGTCCCTTGATGTTTCTGGCCTCAGTTTACCCAAAGTCCTCTTAGGTGGGAAGGGAGGTAGT 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 GATATGATCCAGCTGGCCTGTCTTTGCCCTGGTCTGTCCAGCACCTGGACTGGTTTGTCCAGATGCCCACGGTA 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 GCCTAAGTTCTAAGAGTGAATCTCCAGGTCCTCAGCCGCTCTGTCCTAGGCATGGAAATCCACTAGCAGTGCTC 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 AGGATGGTGCCGCCCAAGCATTCCCTGGCAGGGGAGAAAGGACCAGCACCCCTGGGAGAGGTTAGAACTGTCTC 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 CCTGTAGGCACTCAGTGGATATTCTCCTAAGGCGTTTGGTCGTATTGCAGAGATTCTGCAGCCCCACTACCCAG 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 TACTGCAATACAAATAAAAAGACGCCTAGAACATTTACTGTAGGCCCAGTGTTGCATTCATTAACTCATTCAAT 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 GCCTGCCACTCACAATATCAGCACCAGGAGGTAGGTGCTGTTACCCCCACTTTCTGTAGGGAACCCTGAGGTTC 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 TGAGAGGTTAAATAACTTGTCTGAGTGAAAGGAAAGAACCAAAACCCCAGATCCTATTGGAAAGGGGCAGGCTG 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 GTAAGAGAGATTAAACTGTTCAGATCAGAGGCTGGAAACTAACAAGGCGCTGGACACGCATTATCCTTTTGTTC 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 CTCACAGTTGTCCTCAGACCAGCACTGTTAGGCACTTTGCCAACCTTGGAGGGGTTAAGAGTGAGCCTCTGCTT 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 CTCACCCTGCCTGGGATCTGGACATACCCATTTGTTTTCAGGGCCTTGCCATCCCTGAACCTCCCCTGCTCCCC 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 TTTCTCTTAGAAGAATGTGTCTTCGGAGTGGTGTGTGGGCTGGGTTAAGGTCAGCTGGCACCCTGGCCCCAAGA 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 GCTGGGGAAGTGGCTGAGAACAACAGGGTACGGAGCAAAGCCCCCGCGTGTGAAGCCAGAAGACCACCATTAAC 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 TCACCTTCTCACCAGAGGCCTCAGTTTTGTCCTCTCAAATGGGAGGGTTGATATAAATTATTTCTAATTGGGGT 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 CCGCCTCTGGGAGTCTCCAATTTAAGAATCTCCACTCCTTGGTCTTCAATTGGTTTTAGGAGCCCAGGGCCCAG 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 ACTGAAGTTGATGTTGCCACTGTGAGCTTCAGGCTTGGGCCAGCAGGTCAGGAAATGTTTAGAAAGCCAAGAGC 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 CCTCTGTACTCATCCACCATTCCCAAGGACAGGCGCTCAGAATCAGCTAAATCGTCCTAAGGATGTGGAATGAG 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 CACCACCCTCTGCTGAGTGGAAATGAAGCCAGCGCTGCCACCCTGTCTCGGTGTCTCCAGAGAAATGTAGCAAG 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 GAGGCAGGTACGACAATGTATTTCAGAGGCCCTATCAGTGACGCCGATAGAAACAGCCAGCCCCTTCGGAAGGC 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 AGGTACGACAACATATTTCAGAGGCCCTATCAGTGACGCTGAGGGAAACAGCCAGCCCCTTCGGGAGGCAGGTA 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 TGACAACGTATTTCAGAGGCCCTATCGGTGACGCCAATAGAAACAGCCAGCCCCTTCGGGAGGCACGTGCGACA 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 ACGTATTATTTCAGAGGCCCTATCAGTGATGCCGACGGAAACAGCCAGCCCCTTCGGGAGGCAGGTACAACAGC 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 GTATTATTTCAGAGGCCCTATCAGTGATGCCGACGGAAACAGCCAGCCCCTCCAGGAGGCATGTGCGACAACGT 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 ATTTCAGAGGCCCCATCAGTGACGCTGACGGAAACAGCCAGCCCCTTCGGGAGGCAGGTACGACAGCGTATTAT 2220
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2221 TTCAGAGGCCCTATCAGTGATGCCGACGGAAACAGCCAGCCCCTCCAGGAGGCACGTGCGACAACGTATTTCAG 2294
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2295 AGGCCCCATCAGTGACGCCGACGGAAACAGCCAGCCCCTTCGGGAGGCAGGTACGACAGCGTATCATTTCAGGG 2368
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2369 GCCCTATCAGTGACGCCGATGGAAACAGCCAGCCCCTTCTGGAGGCAGGTACGACAGCATACTATTTCAGGGGC 2442
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2443 CCTATCAGTGACGCCGATGGAAACAGCCAGCCCCTTCGGGAGGCAGGTACGACAGCGTATCATTTCAGGGGCCC 2516
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2517 TATCAGTGACGCCGATGGAAACAGCCAGCCCCTTCTGGAGGCAGGTACGACAGCATACTATTTCAGGGGCCCTA 2590
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2591 TCAGTGACGCCGATGGAAACAGCCAGCCCCTTCGGGAGGCAGTACGACAGCGTATTATTTCAGGGGCCCTATCA 2664
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2665 GTGATGCCGACGGAAACAGCCAGCCCCTTCGGGAGGCAGGTACGACAGCGTATCATTTCAGGGGCCCTATCAGT 2738
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2739 GACGCCGATGGAAACAGCCAGCCCCTTCTGGAGGCAGGTACGACAGCATACTATTTCAGGGGCCCTATCAGTGA 2812
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2813 CGCCGATGGAAACAGCCAGCCCCTTCGGGAGGCAGTACGACAGCGTATTATTTCAGGGGCCCTATCAGTGACGC 2886
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2887 CGATGGAAACAGCCAGCCCCTTCGGGAAGCAGGTACGACAGCGTATTATTTCAGGGGCCCTATCAGTGACGCCG 2960
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2961 ATGGAAACAGCCAGCCCCTTCGGGAGGCAGGTACGACAGCGTATTATTTCAGGGACCCTATCAGTGACGCCGAT 3034
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3035 GGAAACAGCCAGCCCCTTCTGGAGGCAGGTACGACAGCATACTATTTCAGGGGCCCTATCAGTGACGCCGATGG 3108
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3109 AAACAGCCAGCCCCTTCGGGAGGCAGTACGACAGCGTATTATTTCAGGGGCCCTATCAGTGACGCCGATGGAAA 3182
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3183 CAGCCAGCCCCTTCGGGAGGCAGGTACGACAGCGTATTATTTCAGGGGCCCTATCAGTGACGCCGATGGAAACA 3256
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3257 GCCAGCCCCTCCGGGAGGCAGGTACGACAGCGTATTATTTCAGGGGCCCTATCAGTGACGCCGATGGAAACAGC 3330
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3331 CAGCCCCTCCGGGAGGCAGGTACGACAGCGTATTATTTCAGGGGCCCTGTCAGTGACGCCGATGGAAACAGCCA 3404
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3405 GCCCCTTCGGGAGGCAGGTACGACAACGTGTTTCAGAGGCCCTATCAGGGACGCCGATAGAAACAGCCAGCCCC 3478
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3479 TTCAGGAGGCATGTACGACAATGTATTTCAGAGGCCCTATCAGTGACGCCGATAGATACAGCCAGCCCCTTCGG 3552
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3553 GAGGCATGTACAACAACGTATTTCAGAGGCCCTATCAGTGACGCTGATAGAAACAGCCAGCCCCTTCCTGCCCT 3626
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3627 TCCGTGCATCTTCTCCAGTGGATATGGACTGGGGAGGGGCTGTAAGGGGAGAAGTGGCTGTGGGGGCGCTGAGG 3700
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3701 GAGGGACAGCTCCAAGTGCCAAAAGGGCTCTGTGTTTAAAGAACATGGACACAGGCCAGCAGAAGCCAGGCTGC 3774
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3775 CCCACTTCACAGATGGTTTAGAAGAATTTCGTTTGAATTTATTTCAGAGAAACAAGTTGTCTTTTTAATTCAGG 3848
Query 1 -----------------------------------------------------------ATGGAGTCTCACTCT 15
|.||||||||.||.|
Sbjct 3849 CAATTAACTGTGCTCTGCAGTTATCTGCAGTGGTTGGGTTGCTTTTTTTTTTTTTTGAGACGGAGTCTCGCTTT 3922
Query 16 GTCACCCAGGCTGGAGTGCAGTGGCGTGATCTTGGCTCACTGCAACCTCTGCCTCCTGGGTTCAAGCAATTCTC 89
||||||||||||||||||||.|||.|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3923 GTCACCCAGGCTGGAGTGCAATGGTGTGATCTTGGCTCACTGCAACCTCTGCCTCCTGGGTTCAAGCAATTCTC 3996
Query 90 CCACCTCAGCCTCCCAAGTAGCTGGGATTACAGACGTGTGCCACCATACCTGGGTAATTTTTGCATTTTTAGT- 162
...|||||||||||..|||||||||||||||||.||...|||||||.|||.||.|||||||||.|||||||||
Sbjct 3997 TTGCCTCAGCCTCCGGAGTAGCTGGGATTACAGGCGCACGCCACCACACCCGGCTAATTTTTGTATTTTTAGTA 4070
Query 163 GGAGAGGGAGTTTCACCATGTTGGCCAGGTTGGTCT-------------------------------------- 198
||.|.||| ||||||||||||||||||||.||||||
Sbjct 4071 GGGGCGGG-GTTTCACCATGTTGGCCAGGATGGTCTCGAACTCCTGACCTCAGAGGATCCTCCTGCCTCGGCCT 4143
Query 199 -------------------------------------------------------------------------- 198
Sbjct 4144 CCCAAACTGCTGGGATTACAGGTGTGAGCCACCATACCCAGCCTGAGTTACTTTTATAACCCTCCTGTTTCCTT 4217
Query 199 -------------------------------------------------------------------------- 198
Sbjct 4218 TTCAAAAAATAAAACCCGATGGCTGCTTTTTCAGTGCTAGGTGGGGGGTCATCAAATGGAGCCGTCCTGATTTG 4291
Query 199 -------------------------------------------------------------------------- 198
Sbjct 4292 GAGTCGGAAAGTAAAATTCCTCTTCCTCCAAAGAGGCGGTGTCTTCACATCTCACGAGGTCTAGCTCCTGCCAT 4365
Query 199 -------------------------------------------------------------------------- 198
Sbjct 4366 GGGCATCTGGACAGGCGGCTCTGGAGTCTTCTGATTGGTTCCCATCTGTAAACTCAGTTCAAAAACACGTCCTA 4439
Query 199 -------------------------------------------------------------------------- 198
Sbjct 4440 AATACCTCGGGCAGAAAGAGCTCCCTGACGATGCGGGGTCACAGTTGCCCTTTTTAGATACATGCGTTTGGGTC 4513
Query 199 -------------------------------------------------------------------------- 198
Sbjct 4514 CAAACTCACAGTTGCTGTGTTCTGTCCACACCCCTGTCACCCCAGGCTTCTCTATCTGAGATGTGCACAGAAAC 4587
Query 199 -------------------------------------------------------------------------- 198
Sbjct 4588 CCAGACAGGACCAGTCGGCACTGTGTGCTGCGTGCTGCCTCCTGACCAGTCTGTGTGACACCGTCGGGGCTCTT 4661
Query 199 -------------------------------------------------------------------------- 198
Sbjct 4662 CTGGCCAGACAGCTCACAATCCAGATCGGGAAGCCCGAGAGAGGAAGAGGAGGCGGCAGCTCAGGGCCAGTGTG 4735
Query 199 ---------------------------------- 198
Sbjct 4736 TTTGCCCTGGCCCTGCCGCTGAGCCTGGGCCCGT 4769
