Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_11616
- Subject:
- XR_001741287.2
- Aligned Length:
- 5058
- Identities:
- 173
- Gaps:
- 4860
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GACATTACGGCGGAAGGCTCTGGAGGAAGCAGAAGTGAAGGACCTCGCAGTCCTGGGACGGTGGGGCACAGAGA 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GAGAAAGGGAGCCCCGGGCGCGGCGCGGTGAGGATGCGAGCAGAGGAAGGACACGCGGCGCCGGGTACCTGCCG 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 GGAGCGCCGGATCCAATGGGAGGAGGGCCCGCGCCGCACCTCAACCTGGCAGAGGACGTCACGACGCCAAGGCG 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 GTCGCCGGGCCAATGGGAGGCCGTCGCGGGCAGGGACGGGGCCGGGAGGAGTCGGGGCTGGGCCGCGCCGAGGC 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 AGCTGGCTGACTCCAGTTTAGCCGCCGCCGGAGAGGACGGGCGCCGAGCCGGGGCTGCGGACTTCGGCCTGCCC 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 CTCACCTCACTCCCGCTGCTTGCACCTCCCGGATGGTGCTGACTGCTCCCTAAGCGGCGGCGGCGGCGAGTCGT 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 GAGGACGCGCCGCGGAGGCTGTTCGGGGTCGAGGCTTCCCGTCGCCGGCACTTCCTCTTGCGGCGCCCGTGCGC 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 GGCCGGCCCGGCAGGCGGGATGGCGGCCGCGGCTCCAGGGAACGGCCGCGCATCGGCGCCCCGGCTGCTTCTGC 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 TCTTTCTGGTTCCGCTGCTGTGGGCCCCGGCTGCGGTCCGGGCCGGCCCAGATGAAGACCTTAGCCACCGGAAC 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 AAAGAACCGCCGGCGCCGGCCCAGCAGCTGCAGCCGCAGCCTGTGGCTGTGCAGGGCCCCGAGCCGGCCCGGGT 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 CGAGAAAATATTTACACCAGCAGCTCCAGTTCATACCAATAAAGAAGATCCTGCTACCCAAACTAATTTGGGAT 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 TTATCCATGCATTTGTCGCTGCCATATCAGTTATTATTGTATCTGAATTGGGTGATAAGACATTTTTTATAGCA 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 GCCATCATGGCAATGCGCTATAACCGCCTGACCGTGCTGGCTGGTGCAATGCTTGCCTTGGGACTAATGACATG 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 CTTGTCAGTTTTGTTTGGCTATGCCACCACAGTCATCCCCAGGGTCTATACATACTATGTTTCAACTGTATTAT 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 TTGCCATTTTTGGCATTAGAATGCTTCGGGAAGGCTTAAAGATGAGCCCTGATGAGGGTCAAGAGGAACTGGAA 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 GAAGTTCAAGCTGAATTAAAGAAGAAAGATGAAGAATTTCAACGAACCAAACTTTTAAATGGACCGGGAGATGT 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 TGAAACGGGTACAAGCATAACAGTACCTCAGAAAAAGTGGTTGCATTTTATTTCACCCATTTTTGTTCAAGCTC 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 TTACATTAACATTCTTAGCAGAATGGGGTGATCGCTCTCAACTAACTACAATTGTATTGGCAGCTAGAGAGGTG 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 AGTGATATTTGAGAGGAGACTGTTTAAAATGAAACGTAATTATTATTACTTTGTTCCAGAAAACACTGGACACA 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 CTGAAGTGGGCCACAGCATTCCTTCATATGCAAGACTGTTTTACATCTGATAATTCAGCTGCTCTCTAAAATTG 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 GCCTTCTCCCAGTTCCTGCTACCTGCAGGACCCCTATGGTGTAGCCGTGGGTGGAACTGTGGGGCACTGCCTGT 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 GCACGGGATTGGCAGTAATTGGAGGAAGAATGATAGCACAGAAAATCTCTGTCAGAACTGTGACAATCATAGGA 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 GGCATCGTTTTTTTGGCGTTTGCATTTTCTGCACTATTTATAAGCCCTGATTCTGGTTTTTAACAAGCTGTTTG 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 TTCATCTATATTTAGTTTAAAATAGGTAGTATTATCTTTCTGTACATAGTGTACATTACAACTAAAAGTGATGG 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 AAAAATACTGTATTTTGTAGCACTGATTTTGTGAGTTTGACCCATTATTATGTCTGAGATATAATCATTGATTC 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 TATTTGTAACAAGGAGTTTTAAAAGAAACCTGACTTCTAAGTGTGGGTTTTTCTTCTCTCCAACATAATTATGT 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 TAATATGGTCCTCATTTTTCTTTTGGTGCAGAACCGTTGTGCAGTGGGGTCTACCATGCAATTTTCTTTCAGCA 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 CTGACCCCTTTTTAAGGAATACAAATTTTCTCCTTCATCACTTAGGTGTTTTAAGATGTTTACCTTAAAGTTTT 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 TCTTGGGGAAAGAATGAATTAATTTCTATTTCTTAAAACATTTCCCTGAGCCAGTAAACAGTAGTTTAATCATT 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 GGTCTTTTCAAAACTAGGTGTTTAAAAAAAGAGACATATATGATATTGCTGTTATATCAATAACATGGCACAAC 2220
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2221 AAGAACTGTCTGCCAGGTCATTCTTCCTCTTTTTTTTTTAATTGGGTAGGACACCCAATATAAAAACAGTCAAT 2294
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2295 ATTTGACAATGTGGAATTACCAAATTAAAAGAGAATACTATGAATGTATTCATATTTTTTCTATATTGAATAAA 2368
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2369 CAATGTAACATAGATAACAATATAAATAAAAGTGGTATGACCAGTGCTTGTTTTTCCTTGTGTGTCATATAAAA 2442
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2443 TTATCAGTATTGATAGGCCAATTTCTAAAGCTGATGTAAAAACACTAACATATTAAATATTTGAGATATGCCTA 2516
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2517 AAGTAGCTAAACAGGAGCCAGGCATTGTTCGAAAGCATTGTCACCCTTACAGTTCTGTGAGGTAGTAGGTACTA 2590
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2591 ATATAAGGTTAAAAAAGAAAAAAACTAACTCACCCAAGGTTACATGGTAGAGTCACACCAGGCGGTTTAATTCC 2664
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2665 AGAGCCTAATGTCATTCATTATGCTAAGACTACCTCATTTTTTCATGGCAACTTCAGTCGTCACCCTCGTTTGA 2738
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2739 GTATATTTTGATTTGACTACTACTTCACCCAAGTAGCATAACAGCTGCTTTCTCTCAGCCTTTTATATTCTAGA 2812
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2813 ATCATATGCAGTAACATTCCCATTAATAGCCTCACTAAATTGAAGGACAATTCTACAGAAACATCCATGTTATT 2886
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2887 TGTGTGAGGTATAATAGGAGACCCAGAGCAATTCAGGTTTATGAGCTACTACAAAGGTCCACAATGTAGTCTGC 2960
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2961 AATTTGAAGAGATTGTGAAAGAACCCAGTTAATCATCCAGCACTGTAGGATGCAGCAATTGTCCTACATGGTAA 3034
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3035 CTCTGTGAGGAAGATGATAGCTACTACTGTGGAGATCTTAAGAGGAGTTTTCAGCTTAAATGCCAAGTTAGAAG 3108
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3109 TAGCACATGTTGGTAAAAAAGGTCATATTTGTAGTTTTCTGCTATAGGAAGTATCAAAGGGTAGAAAACAATGT 3182
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3183 CTGTGGATTAAGATAAACTCTGTGGTTAGACAGTCTATATTGCCTTAGATTGTTTGTTTGTTATAAAGAAAGAG 3256
Query 1 -------------------------------------ATGGAGTCTCACTCTGTCACCCAGGCTGGAGTGCAGT 37
|..|||||||||||||||.||||||||||||||||||
Sbjct 3257 TGAGGAATTCTCACTAGTATTTTTTTTTTTTTTTTTGAGAGAGTCTCACTCTGTCGCCCAGGCTGGAGTGCAGT 3330
Query 38 GGCGTGATCTTGGCTCACTGCAACCTCTGCCTCCTGGGTTCAAGCAATTCTCCCACCTCAGCCTCCCAAGTAGC 111
||.||||||||||||||||||||||||..||.||.|||||||||||.||||||..||||||||||||.||||||
Sbjct 3331 GGTGTGATCTTGGCTCACTGCAACCTCCACCGCCCGGGTTCAAGCAGTTCTCCTGCCTCAGCCTCCCGAGTAGC 3404
Query 112 TGGGATTACAGACGTGTGCCACCATACCTGGGTAA-TTTTTGCATTTTTAGTGGA---GAGGGAGTTTCACCAT 181
|||||||||||.||||..|.||||..|||||.||| ||||||.|||||||||.|| ||.||||||||.||||
Sbjct 3405 TGGGATTACAGGCGTGCACTACCACGCCTGGCTAATTTTTTGTATTTTTAGTAGAGATGATGGAGTTTCGCCAT 3478
Query 182 GTTGGCCAGGTTGGTCT--------------------------------------------------------- 198
|.||||||||.||||||
Sbjct 3479 GCTGGCCAGGCTGGTCTCGAACTCCTGACCTTATGATCCGCCCACCTCAGCCTCCCAAAGCGCTGGGATTACAG 3552
Query 199 -------------------------------------------------------------------------- 198
Sbjct 3553 GCGTGAGCCACCATGCTTGGCCTACTAATACGTTTTGTTTGTTTGGAGACAATCTATCTCACTCTGTCACCTGG 3626
Query 199 -------------------------------------------------------------------------- 198
Sbjct 3627 GCTGGAATGCAGTGGCGCAATCTCGGCTCACTGCAACCTCTGCCTCCTGAGTTCAAGCAGTTCTCCTGCCTCAG 3700
Query 199 -------------------------------------------------------------------------- 198
Sbjct 3701 CCTCCCAAGTTGCAGGGATTATAGGTGCCCGCCACCACGCCTGGCTAATTTTTTTGTATTTTCAGTAGAGACAG 3774
Query 199 -------------------------------------------------------------------------- 198
Sbjct 3775 GGTTTTACCATGTTGGCCAGGCTGGTCTTGAACTCATGACCTTAGGTGATCCACCCACCTCAGCCTCCCAAAGT 3848
Query 199 -------------------------------------------------------------------------- 198
Sbjct 3849 GCTAGGATTACAGGCGTGAGCCACCGCACCCAACCGTTTTTTCTAATAACAACAGAAAAGACAATTCCTCGTAG 3922
Query 199 -------------------------------------------------------------------------- 198
Sbjct 3923 GGAGTAGCTGGCACCATCATCGTGTAACCTCAGTTCAGGTAGCTTGGTCCCATTACTAGCTTCATATGCGAATA 3996
Query 199 -------------------------------------------------------------------------- 198
Sbjct 3997 AGAACAGCATCGCATTCTGAGGCACCACAATCTTGTAGCAGGACATAATTCCTCTGAGAATTTTTGGTAAGTCA 4070
Query 199 -------------------------------------------------------------------------- 198
Sbjct 4071 GACCTAAGCTATAAGGTAAAAATCGCTACTGCAATAGGCTCCATTGTTGAATAAAAGAAAGGGAAATGTCATTG 4144
Query 199 -------------------------------------------------------------------------- 198
Sbjct 4145 ATAGTGATCTTAAAATATTTAATAGTCTTTCTTTAAAATCCAAAATGTGATTCTTACAAGTTATGTGCCACATG 4218
Query 199 -------------------------------------------------------------------------- 198
Sbjct 4219 AAGCAGGTGTTATTTTTTGAGAAATGCAGGTGATAACTGAAAAACATAGCACTGAGGTATTTTTTATTTTTAAA 4292
Query 199 -------------------------------------------------------------------------- 198
Sbjct 4293 ATTGAAGGAAACAAAGTCTGGATCTAATTATTTTTACATTTACAAAAACTGCTACTGCTTGGCTCTTTTGCTAT 4366
Query 199 -------------------------------------------------------------------------- 198
Sbjct 4367 AAGTTTAGGTTCTGAATACATGACAAGAGTATGGGAAAGAGCAGAATAATAGTACACGCAGTTTTAAAAGCTAT 4440
Query 199 -------------------------------------------------------------------------- 198
Sbjct 4441 GCACATCATAACCTGGAATAATGATTACACAGCAAGAGGCCTGAGTGGAGGTAGGCTAACAACACATTTTGACT 4514
Query 199 -------------------------------------------------------------------------- 198
Sbjct 4515 TTCTCCTCAAAGGATAGCTTTGAAAAACAAGTGTAACCAATTGTTACACCAAATTAAAATGGCAATATTAAATC 4588
Query 199 -------------------------------------------------------------------------- 198
Sbjct 4589 GGTAACAAAACGATCCACATTTTATACAATATTGTATTTCCAAACATACATAGGTCATGAAAATCAGAGAACCT 4662
Query 199 -------------------------------------------------------------------------- 198
Sbjct 4663 AATATAGCACCGTTGAAACCATTCATTATCCTTCATGTGTGTATGCAATTCAGAATTTCGGCAGAAGACAACAA 4736
Query 199 -------------------------------------------------------------------------- 198
Sbjct 4737 ATGGAAAATGCCTTTCGTTTCTATAAATCATTTTGGATTTCAATTAAATCTTTGCCTTAGTAAAGGGTATTCTT 4810
Query 199 -------------------------------------------------------------------------- 198
Sbjct 4811 ATCTCAAGATCAATTAGCCGTTTTTAGCTCCACCGTTTTGGAAGTAAAAATGATGAGCTACATCTACTTTTTAA 4884
Query 199 -------------------------------------------------------------------------- 198
Sbjct 4885 TTTAAAACCAAGAACCAAGCAGTAAGGACAGCAATGTCAAGAATATCACATTGAGAACCACACAGAACATTATA 4958
Query 199 -------------------------------------------------------------------------- 198
Sbjct 4959 AAGAATTTGGTGCATGTTTTAACAACTACCAACTGATGTTAACAATGAAAAATTTACAAAGGTAAAACTTTTTT 5032
Query 199 -------------------------- 198
Sbjct 5033 TTTTTTTTTGCACTGACTGGTTTCAA 5058
