Nucleotide Global Alignment

Description

Query:
ccsbBroad304_11616
Subject:
XR_001741931.1
Aligned Length:
5802
Identities:
160
Gaps:
5623

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  CGGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCGTGATCTGCCTGCCTTGGGCTCCTGAGT  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  GTTTTCAGATAAGTAGATATTAAGTGACTGACTGAGTAAAGGGATACACTGGATCTATGGAAGTCTTGATCCAA  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  AAAGCTCTCCATTGTCCAGTCAGACTCCCTTTTCCATCTCCAGGGCAGACCAGGGCATGGTATAAACTGACTCC  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  ACTCCTTGTGTGTAATACAGTGTCTTCCTAGAGAGGGCGTCTGTCATTCCACCCCCAGGGACTGCTTGGCATCT  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  GTGTGGCAGGGGCCATGCTGTTCCCCGCTGGGAGCACCATCCTACAGTAATCTCTGTGCAGGATGCTATTATAA  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  GAAAGACTTGGGACTTTGTCCCCACTCTGCAACCTCACACCCCAAACTGGGAAGGTGCTGAGAAACCGAAGATT  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  GGCTCGGACAAGTCCAGCTTGGCCAGTAGATGACTCTATTGAGGGCCCTCCTGGGTGGCGGCAGGACAGCTCTA  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  GAGGTTCGCACTGCTGCCATCACTAAGCAAAGTCTCTGGTTCCTGGCCTGCTGTGTGTGATGGGACTGCCTTCC  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  TGGGTAGGTTCCCAGATACTCCCAGGGACACACGCTCCTCGCTGGGCCCCCCTGGCCTTGGCTCCTTGCCTGGC  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  CTTCAGGGTTCAGGCAGTGGACATCCACCCCACGTGACATGGTGGGACACCTGTCACACCACCGATGCCCCTGC  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  AGATGGGCCACGCAACAGCCCTCGGGCCTTCCTGTCTCAGAGCAGGGCTGATCACAGTCAGGCCCACTGCAGTG  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  GAGAAAGACTGTGCAGAGCTAGACGCTGGACTCGGATCCTCTCTAGCGTGGGACAGGCACTGGGCACCCAGGTC  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  AGCTGCAGTTCCTGAGAGAGGGCAGCCCCAGAGTCAGAATCAAGGTGTCAATAATAGGAGAAACGATGGTGGGG  962

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  963  AGGAGACCAAGGCATTAATATAGGAACTCTGTATACTTTCCAGTCAATTTTTCCATAAAACTAAAACTGCTCTA  1036

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1037  AAAAAGGAGTCTGTTAATTTTTTAAAATCTCAAAAAGAATGTGGCTGGTGCCACAATGAACAATTTGAGTGAGA  1110

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1111  AGCTACTCAACGAGGTCAGAGGCATCAGAGAGGAAGAACACAGCAGCCTGTTTTCTTTGCTGCTCTTTACCGTT  1184

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1185  AGAAAGAACACTTTTACAACAGACTCTGTTTGAGGACAAACGCTCCACATTTTTGCCCGCTGGCAGCAGTCATA  1258

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1259  AATTATGAGATTTCTGAGGGGCACAAAACTGCAGCGGTCTAAACCAGGCAACAAAAATCAGCCAAGTCCTTATC  1332

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1333  AGGATCCCCTACAAATTCTATTGACTTTTTTGGATCTGTTTGTCCCTAGGTGTGAACTAGGGAAAAGTCAGGCG  1406

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1407  AGTCTGCCTTGCTAGTATATTTAAAAGAGGATCTTGGAGAATTTGAAAGAAAATGTGGAAGAAGAAATGACAGT  1480

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1481  GCTTGGTGAAAGTCAGCAGAAGGGCTTGATAATGGAACAGACTAAGGGTGGTGGATAGTTTTAAGGTTGAGAGA  1554

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1555  GAAATGGAATTAAAAAAAAGGGAGATATTCCTGGGGGCTTGAAGCAAGAAGCAGCAGCCGAGAGCAGCGCTGAT  1628

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1629  CAGGATGTGAAGGGAGCTTGGTGCGGAGGGCAGTGCTTCCTATGAGAAAAAGTCCAGTGGTCAATCTTTTGGGA  1702

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1703  AGGAGCTGGTGGGATGAGGGGGCAGCTGGACTGACCTGAGTGCTGTTGTACTGTCTGACCATCTCCTTTGTAAA  1776

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1777  CAGACGCTCCACACTCATGCTCAGAGCAGCATTATTCACAGCAGCCAGGAGGGGGACGTCGCCCAGGTGTTCCT  1850

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1851  CGGTGGATGAATGGATAAAGAAAATGTAAACACACAGTGGAATCTTACTCAGCCTTGAAAAGGAAGGAAAGTCC  1924

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1925  ATCCAACACATGCTACTGCATGGACGAACTTTGGACAGTGAGCTAAGTGAAAGGAGACAGTCACAAAAGGACAA  1998

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1999  ATACCAGATGATCCCACCTGCGCGAGATGATCAGGTTTGTCATATCTCCTGCATGGAGGAAAATTGCTTTCTGT  2072

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2073  AAATCTTGGTCCAACAGAACAAAACACCTATTTCTTTCCAGTTGGGAGGACAGCCATTCTCATCGGTATAATGA  2146

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2147  ACGTATTGTAAGCTGTGACTTTTACAAAGTCTGAGGGAAACCAATCTGCAATCTTGACAGATACGATCTTTCCA  2220

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2221  GATGCACTGTTCGTTTACGGCGGCAAGAGAGCTCAATTAATTTCTGAGGGAGGACGGCAGGATGCGACCCCTTG  2294

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2295  TGCGTGGCCTAGGAGGAACTGTCCCTGTGTGAATTTATGTTCTGGTAATTTAAAAAGATTTATATTAAGCTTTT  2368

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2369  CTTTCATTTTGAGAGTAGATTAAAATTCTAATGGAAACCATTTGTATGCATTTGTTGAATTGAAGAGTATTTAT  2442

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2443  GGCTGTGTAAAAAAAATGCTGCAAAATTCTGCCGATAATAAAGTCAGTGAAGCAAGAATAAGTGTAAAAACAGG  2516

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2517  AAGGAAATACGCGATAGAAACCATACTGTATTATACAAGTATAATGAGGGAGGCAAGCCGAGCAGAACGGGGCA  2590

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2591  GGGATTAGGCCCCCGGATGGGATAGTTTTTCTTATTTAGTGTAAGGCTTTTGTAGCCCTTTTATGACTTAAAAC  2664

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2665  AAAATTTAAATTTTGAAACAGGCCAGGTCAGTCTGCACAGACCCCATGGCCACATCACTGTGTCACATCATTCT  2738

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2739  TGAACTCCTGCCGGTGTCTAGGACAAACAGGCAGGAAAGAAAATCCAAGCGGCGTCTCAGAGAAAAGATGCTGA  2812

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2813  TGGCAGGAAAAGAAGACCCATGAAACAGGAGGCGGGGGTCAGCGAGCAAGGTGAAAATCAGAGCCCCGGAGTGC  2886

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2887  AGTGCAGGTGGAAGAGAGGTAGCAAAACCAGGGAAGTCGCCGTGCTCGGGACAGTCCAGTGTGTCCCTGGCATC  2960

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2961  CCCAGTCATTGCCGTGGCCACCTGATCAGAACCTGTACAGAAGCTGCCCCATCTCCTCCACGGTGAGGGCCAAG  3034

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3035  TTGCATGTGCCACAGCCCTGTCGGTGACCTTTCTGCGGGCTGGGGAAGCAGAGACAACGGCCTGACAATCTGCA  3108

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3109  GGCACAGCCATCCAAGGGGACAGGGTCCATGCAACAGCCACCAGAGAAAGCTCCTCACTGCCACCTTTGCAGAG  3182

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3183  GGAGAAAAGCAGAAAGCATCGTGGAGGCCCTTTATCATGTTGGAAGGCCAGAGACATTTGGCATTCCGTCAAGG  3256

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3257  TCCATCTTAGAGTTGAGAGAGAGTTTCACCAGGAAACTCACATTCTCTCAGAACTAGCAGCCGTGATCGCATGT  3330

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3331  CGAAGTCAGGCAACGCCAAGCGTGATGGTTAACAGCGCTAAGACAGGAGAAAATGGAAATTCCCTGAGAGTCCA  3404

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3405  CTGCTCTGCTCCTGCGGCGGTGCTTTTCCCCCTCGTTGTAAGCATGCTCTTTACCAGAGCTGCACGGATGTCAT  3478

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3479  AAACTGCCTCACGATGCACTAGAGCAGAATCGTGCGTTAGCAAATTTCACAGATGCAAAGTGGGATTTCTGTCA  3552

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3553  ATGGAAGCCTGCATGGAAAATACGGAACAGCTTAAGAAAGTACTGTCTTCTCTCAAAATTCCACAGGAGCCTGA  3626

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3627  AATGCAGGGGTTCCGGCCTAGGCGTTTTTTGAGGCAAATAACGTCGCCACACGGCCGAGATACAGGCCCCTTTT  3700

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3701  TGCCCCATGAGACTTACTGGCCTCAGAGTCCGGCCGCTTCTGTTTTGTTTCTTCATGTATCCTTGGCTTCTAGC  3774

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3775  GCAGTTCCTGGTACACAGCAGGCGCTCAATACATATTTGCTGAGCTAAGCAAATATGTCCTAGGCCCTGTGGAA  3848

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3849  GATACGACATGAGGAAGACCAGGTCCCTGCCAAAAAGGCACCGAGGGCCCAGGCTGGGGAGGGTAGTGCTGACA  3922

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3923  TCGAGTAGGCCTTCAGCTCTGACCCCAGCTTCATTTTAAGTGACTAGGAACAAATTCTCAAAACTTCTTTTCTA  3996

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3997  TCAACTCTTCTTCACCCCCAATATCACAGCACAACTGTCTGTCATTGATGGAGTTCCTGCAATAAGACAAGCGC  4070

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 4071  TAGAAGTTTACCATATTTGTATCCTTACTGGATTCCCAAATTAATCCTAGTAAGCAAGTGACATGATTGTTTTT  4144

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 4145  AGTAGAGACAGGGTTTCACTTTGTTGGCCAGGCTAGTCTTGAACTCCTGACCTCAAGTGATCCACCCACCTCAG  4218

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 4219  CCTCCCAAAGTGCTGGGATTAGGAAAATGAATACTTTTGCAAGCACAATGACAGGAGTGTCAAAGGAGGTAGGC  4292

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 4293  TCCACACTCTGATGTCTCTTTATCAGTGAGGCCTTTTCTGACTCCCTCACATGAAGAGCAAACTCACTTCCCTT  4366

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 4367  GTGCCAAAGCACTCAACATATATGACATCCCACACGGGGTAGGCTGAATCGTGGCCCTTAAAGTATGTCCATGT  4440

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 4441  TCCAATCCTTAGAACATGTGAATGTATTACCTTATGTGGCAAAATGGACTTTGCAGACATGATTAAGTTAAGGA  4514

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 4515  TCTTGAGATTTCAGGAAAATTATCTTGGATCATTCAGGTAGGCCTGACATAATCACAAGAGCCCTTACAAGAGA  4588

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 4589  GAGGCAGGAGGCCAGAGGCAGAGAGCTACACTGCGGAGCTGCTTTGCAGATGGAGGAAGGGGCCACCGAGACCT  4662

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 4663  GAGAAAGTCAAGGAGACAGATTCTCCCCTGGAGCCTCCAGAGGGAACCAGCCCTGCTCACACCGTCATTTCAGC  4736

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 4737  CCTGCAAGACTTGTTTGGGCTTCTGACGTCAAGAACTGGGACAGAATGAATTTGTGATGTTTTAGGCCACTAGA  4810

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 4811  TCTGTGGTAATGTGTTATAGCAGAAATAGGAAACTAACACAACTCATCTCTACTTGTGTATATGTTTGTTATCC  4884

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 4885  GTCTTCCTCTGCTGGGACATGAAATCCGCAACAAGTGGAGGCAAAGCCAGGGACTTTGTCTATTATGTTGACTG  4958

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 4959  GCATCCTTAGTGCTCAGAACAGAGCTCAGAATAATAAATATTTGTTGAATGAGCAAAGACGGAGGGGGCAGTCG  5032

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 5033  CAGGAAGGGGGCCTACCGCGTGGCTAAGGGCCCTGAGGTATGAAAGATCTGAGATGCTGGTGGACGTGGCTGCT  5106

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 5107  TCCCGAGCTGAACTGGGGAAGTGGTGGGGAGGTGGGAGATGTCGGGGAGCTGATGCTGGGGCAGTTTATACTTT  5180

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 5181  ATTCTGCAAATGAAGAATTATTGATGGGTTTCATGTAGAGTCATGATCATATTTCTTGATTGCGTTTTTTTTTT  5254

Query    1  --------------------------ATGGAGTCTCACTCTGTCACCCAGGCTGGAGTGCAGTGGCGTGATCTT  48
                                      |..|||||||||||||||.||.|||||||||||||||||.|.||||||
Sbjct 5255  GTTTTGTTTTGTTTTGTTTTTTTGAGACAGAGTCTCACTCTGTCGCCGAGGCTGGAGTGCAGTGGTGCGATCTT  5328

Query   49  GGCTCACTGCAACCTCTGCCTCCTGGGTTCAAGCAATTCTCCCACCTCAGCCTCCCAAGTAGCTGGGATTACAG  122
            ||||||||||||||||.|||||||||.||||                 |||.||||.|||||||||||||||||
Sbjct 5329  GGCTCACTGCAACCTCCGCCTCCTGGATTCA-----------------AGCTTCCCGAGTAGCTGGGATTACAG  5385

Query  123  ACGTG--TGCCACCATACCTGGGTAATTTTTGCATTTTTAGTGGAGAGGGAGTTTCACCATGTTGGCCAGGTTG  194
              |||  |||||||||.||.||.|||||||||.|||||||||.||||.||||||||||||||||.|.||||.||
Sbjct 5386  --GTGCATGCCACCATGCCCGGCTAATTTTTGTATTTTTAGTAGAGACGGAGTTTCACCATGTTAGTCAGGCTG  5457

Query  195  GTCT----------------------------------------------------------------------  198
            ||||                                                                      
Sbjct 5458  GTCTCAAACTCCTGACCTCGTGATCCACCCACCTCAACCTCCCAAAGTGCTGGGATTACAAGCGTGAGCCACTG  5531

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 5532  CGCCTGGCCTCCTGATTGCTTTTTAAGTAATTTTTTAAAAATAATTTTTCTCTTTATTATTAAATGTTAGAAAT  5605

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 5606  ATATGGAAACGTGGGCAAAAAGTAAAAATCACTCAAATCTCATTCCTAGAGTTAGTCACTATTAATATTTTGGT  5679

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 5680  GTATGTGTATTTCTTCCTTCAACATTCAGATTATATACTTTTTTGAAACTGGCTTTTTTCTCTTAATGTGAATT  5753

Query  199  ------------------------------  198
                                          
Sbjct 5754  TCTCCATGTCATTAAATATTCTCCTAAAAA  5783

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