Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_11616
- Subject:
- XR_001741931.1
- Aligned Length:
- 5802
- Identities:
- 160
- Gaps:
- 5623
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 CGGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCGTGATCTGCCTGCCTTGGGCTCCTGAGT 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GTTTTCAGATAAGTAGATATTAAGTGACTGACTGAGTAAAGGGATACACTGGATCTATGGAAGTCTTGATCCAA 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 AAAGCTCTCCATTGTCCAGTCAGACTCCCTTTTCCATCTCCAGGGCAGACCAGGGCATGGTATAAACTGACTCC 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 ACTCCTTGTGTGTAATACAGTGTCTTCCTAGAGAGGGCGTCTGTCATTCCACCCCCAGGGACTGCTTGGCATCT 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 GTGTGGCAGGGGCCATGCTGTTCCCCGCTGGGAGCACCATCCTACAGTAATCTCTGTGCAGGATGCTATTATAA 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 GAAAGACTTGGGACTTTGTCCCCACTCTGCAACCTCACACCCCAAACTGGGAAGGTGCTGAGAAACCGAAGATT 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 GGCTCGGACAAGTCCAGCTTGGCCAGTAGATGACTCTATTGAGGGCCCTCCTGGGTGGCGGCAGGACAGCTCTA 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 GAGGTTCGCACTGCTGCCATCACTAAGCAAAGTCTCTGGTTCCTGGCCTGCTGTGTGTGATGGGACTGCCTTCC 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 TGGGTAGGTTCCCAGATACTCCCAGGGACACACGCTCCTCGCTGGGCCCCCCTGGCCTTGGCTCCTTGCCTGGC 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 CTTCAGGGTTCAGGCAGTGGACATCCACCCCACGTGACATGGTGGGACACCTGTCACACCACCGATGCCCCTGC 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 AGATGGGCCACGCAACAGCCCTCGGGCCTTCCTGTCTCAGAGCAGGGCTGATCACAGTCAGGCCCACTGCAGTG 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 GAGAAAGACTGTGCAGAGCTAGACGCTGGACTCGGATCCTCTCTAGCGTGGGACAGGCACTGGGCACCCAGGTC 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 AGCTGCAGTTCCTGAGAGAGGGCAGCCCCAGAGTCAGAATCAAGGTGTCAATAATAGGAGAAACGATGGTGGGG 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 AGGAGACCAAGGCATTAATATAGGAACTCTGTATACTTTCCAGTCAATTTTTCCATAAAACTAAAACTGCTCTA 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 AAAAAGGAGTCTGTTAATTTTTTAAAATCTCAAAAAGAATGTGGCTGGTGCCACAATGAACAATTTGAGTGAGA 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 AGCTACTCAACGAGGTCAGAGGCATCAGAGAGGAAGAACACAGCAGCCTGTTTTCTTTGCTGCTCTTTACCGTT 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 AGAAAGAACACTTTTACAACAGACTCTGTTTGAGGACAAACGCTCCACATTTTTGCCCGCTGGCAGCAGTCATA 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 AATTATGAGATTTCTGAGGGGCACAAAACTGCAGCGGTCTAAACCAGGCAACAAAAATCAGCCAAGTCCTTATC 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 AGGATCCCCTACAAATTCTATTGACTTTTTTGGATCTGTTTGTCCCTAGGTGTGAACTAGGGAAAAGTCAGGCG 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 AGTCTGCCTTGCTAGTATATTTAAAAGAGGATCTTGGAGAATTTGAAAGAAAATGTGGAAGAAGAAATGACAGT 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 GCTTGGTGAAAGTCAGCAGAAGGGCTTGATAATGGAACAGACTAAGGGTGGTGGATAGTTTTAAGGTTGAGAGA 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 GAAATGGAATTAAAAAAAAGGGAGATATTCCTGGGGGCTTGAAGCAAGAAGCAGCAGCCGAGAGCAGCGCTGAT 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 CAGGATGTGAAGGGAGCTTGGTGCGGAGGGCAGTGCTTCCTATGAGAAAAAGTCCAGTGGTCAATCTTTTGGGA 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 AGGAGCTGGTGGGATGAGGGGGCAGCTGGACTGACCTGAGTGCTGTTGTACTGTCTGACCATCTCCTTTGTAAA 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 CAGACGCTCCACACTCATGCTCAGAGCAGCATTATTCACAGCAGCCAGGAGGGGGACGTCGCCCAGGTGTTCCT 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 CGGTGGATGAATGGATAAAGAAAATGTAAACACACAGTGGAATCTTACTCAGCCTTGAAAAGGAAGGAAAGTCC 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 ATCCAACACATGCTACTGCATGGACGAACTTTGGACAGTGAGCTAAGTGAAAGGAGACAGTCACAAAAGGACAA 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 ATACCAGATGATCCCACCTGCGCGAGATGATCAGGTTTGTCATATCTCCTGCATGGAGGAAAATTGCTTTCTGT 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 AAATCTTGGTCCAACAGAACAAAACACCTATTTCTTTCCAGTTGGGAGGACAGCCATTCTCATCGGTATAATGA 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 ACGTATTGTAAGCTGTGACTTTTACAAAGTCTGAGGGAAACCAATCTGCAATCTTGACAGATACGATCTTTCCA 2220
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2221 GATGCACTGTTCGTTTACGGCGGCAAGAGAGCTCAATTAATTTCTGAGGGAGGACGGCAGGATGCGACCCCTTG 2294
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2295 TGCGTGGCCTAGGAGGAACTGTCCCTGTGTGAATTTATGTTCTGGTAATTTAAAAAGATTTATATTAAGCTTTT 2368
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2369 CTTTCATTTTGAGAGTAGATTAAAATTCTAATGGAAACCATTTGTATGCATTTGTTGAATTGAAGAGTATTTAT 2442
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2443 GGCTGTGTAAAAAAAATGCTGCAAAATTCTGCCGATAATAAAGTCAGTGAAGCAAGAATAAGTGTAAAAACAGG 2516
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2517 AAGGAAATACGCGATAGAAACCATACTGTATTATACAAGTATAATGAGGGAGGCAAGCCGAGCAGAACGGGGCA 2590
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2591 GGGATTAGGCCCCCGGATGGGATAGTTTTTCTTATTTAGTGTAAGGCTTTTGTAGCCCTTTTATGACTTAAAAC 2664
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2665 AAAATTTAAATTTTGAAACAGGCCAGGTCAGTCTGCACAGACCCCATGGCCACATCACTGTGTCACATCATTCT 2738
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2739 TGAACTCCTGCCGGTGTCTAGGACAAACAGGCAGGAAAGAAAATCCAAGCGGCGTCTCAGAGAAAAGATGCTGA 2812
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2813 TGGCAGGAAAAGAAGACCCATGAAACAGGAGGCGGGGGTCAGCGAGCAAGGTGAAAATCAGAGCCCCGGAGTGC 2886
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2887 AGTGCAGGTGGAAGAGAGGTAGCAAAACCAGGGAAGTCGCCGTGCTCGGGACAGTCCAGTGTGTCCCTGGCATC 2960
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2961 CCCAGTCATTGCCGTGGCCACCTGATCAGAACCTGTACAGAAGCTGCCCCATCTCCTCCACGGTGAGGGCCAAG 3034
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3035 TTGCATGTGCCACAGCCCTGTCGGTGACCTTTCTGCGGGCTGGGGAAGCAGAGACAACGGCCTGACAATCTGCA 3108
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3109 GGCACAGCCATCCAAGGGGACAGGGTCCATGCAACAGCCACCAGAGAAAGCTCCTCACTGCCACCTTTGCAGAG 3182
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3183 GGAGAAAAGCAGAAAGCATCGTGGAGGCCCTTTATCATGTTGGAAGGCCAGAGACATTTGGCATTCCGTCAAGG 3256
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3257 TCCATCTTAGAGTTGAGAGAGAGTTTCACCAGGAAACTCACATTCTCTCAGAACTAGCAGCCGTGATCGCATGT 3330
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3331 CGAAGTCAGGCAACGCCAAGCGTGATGGTTAACAGCGCTAAGACAGGAGAAAATGGAAATTCCCTGAGAGTCCA 3404
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3405 CTGCTCTGCTCCTGCGGCGGTGCTTTTCCCCCTCGTTGTAAGCATGCTCTTTACCAGAGCTGCACGGATGTCAT 3478
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3479 AAACTGCCTCACGATGCACTAGAGCAGAATCGTGCGTTAGCAAATTTCACAGATGCAAAGTGGGATTTCTGTCA 3552
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3553 ATGGAAGCCTGCATGGAAAATACGGAACAGCTTAAGAAAGTACTGTCTTCTCTCAAAATTCCACAGGAGCCTGA 3626
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3627 AATGCAGGGGTTCCGGCCTAGGCGTTTTTTGAGGCAAATAACGTCGCCACACGGCCGAGATACAGGCCCCTTTT 3700
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3701 TGCCCCATGAGACTTACTGGCCTCAGAGTCCGGCCGCTTCTGTTTTGTTTCTTCATGTATCCTTGGCTTCTAGC 3774
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3775 GCAGTTCCTGGTACACAGCAGGCGCTCAATACATATTTGCTGAGCTAAGCAAATATGTCCTAGGCCCTGTGGAA 3848
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3849 GATACGACATGAGGAAGACCAGGTCCCTGCCAAAAAGGCACCGAGGGCCCAGGCTGGGGAGGGTAGTGCTGACA 3922
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3923 TCGAGTAGGCCTTCAGCTCTGACCCCAGCTTCATTTTAAGTGACTAGGAACAAATTCTCAAAACTTCTTTTCTA 3996
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3997 TCAACTCTTCTTCACCCCCAATATCACAGCACAACTGTCTGTCATTGATGGAGTTCCTGCAATAAGACAAGCGC 4070
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4071 TAGAAGTTTACCATATTTGTATCCTTACTGGATTCCCAAATTAATCCTAGTAAGCAAGTGACATGATTGTTTTT 4144
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4145 AGTAGAGACAGGGTTTCACTTTGTTGGCCAGGCTAGTCTTGAACTCCTGACCTCAAGTGATCCACCCACCTCAG 4218
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4219 CCTCCCAAAGTGCTGGGATTAGGAAAATGAATACTTTTGCAAGCACAATGACAGGAGTGTCAAAGGAGGTAGGC 4292
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4293 TCCACACTCTGATGTCTCTTTATCAGTGAGGCCTTTTCTGACTCCCTCACATGAAGAGCAAACTCACTTCCCTT 4366
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4367 GTGCCAAAGCACTCAACATATATGACATCCCACACGGGGTAGGCTGAATCGTGGCCCTTAAAGTATGTCCATGT 4440
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4441 TCCAATCCTTAGAACATGTGAATGTATTACCTTATGTGGCAAAATGGACTTTGCAGACATGATTAAGTTAAGGA 4514
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4515 TCTTGAGATTTCAGGAAAATTATCTTGGATCATTCAGGTAGGCCTGACATAATCACAAGAGCCCTTACAAGAGA 4588
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4589 GAGGCAGGAGGCCAGAGGCAGAGAGCTACACTGCGGAGCTGCTTTGCAGATGGAGGAAGGGGCCACCGAGACCT 4662
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4663 GAGAAAGTCAAGGAGACAGATTCTCCCCTGGAGCCTCCAGAGGGAACCAGCCCTGCTCACACCGTCATTTCAGC 4736
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4737 CCTGCAAGACTTGTTTGGGCTTCTGACGTCAAGAACTGGGACAGAATGAATTTGTGATGTTTTAGGCCACTAGA 4810
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4811 TCTGTGGTAATGTGTTATAGCAGAAATAGGAAACTAACACAACTCATCTCTACTTGTGTATATGTTTGTTATCC 4884
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4885 GTCTTCCTCTGCTGGGACATGAAATCCGCAACAAGTGGAGGCAAAGCCAGGGACTTTGTCTATTATGTTGACTG 4958
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4959 GCATCCTTAGTGCTCAGAACAGAGCTCAGAATAATAAATATTTGTTGAATGAGCAAAGACGGAGGGGGCAGTCG 5032
Query 1 -------------------------------------------------------------------------- 0
Sbjct 5033 CAGGAAGGGGGCCTACCGCGTGGCTAAGGGCCCTGAGGTATGAAAGATCTGAGATGCTGGTGGACGTGGCTGCT 5106
Query 1 -------------------------------------------------------------------------- 0
Sbjct 5107 TCCCGAGCTGAACTGGGGAAGTGGTGGGGAGGTGGGAGATGTCGGGGAGCTGATGCTGGGGCAGTTTATACTTT 5180
Query 1 -------------------------------------------------------------------------- 0
Sbjct 5181 ATTCTGCAAATGAAGAATTATTGATGGGTTTCATGTAGAGTCATGATCATATTTCTTGATTGCGTTTTTTTTTT 5254
Query 1 --------------------------ATGGAGTCTCACTCTGTCACCCAGGCTGGAGTGCAGTGGCGTGATCTT 48
|..|||||||||||||||.||.|||||||||||||||||.|.||||||
Sbjct 5255 GTTTTGTTTTGTTTTGTTTTTTTGAGACAGAGTCTCACTCTGTCGCCGAGGCTGGAGTGCAGTGGTGCGATCTT 5328
Query 49 GGCTCACTGCAACCTCTGCCTCCTGGGTTCAAGCAATTCTCCCACCTCAGCCTCCCAAGTAGCTGGGATTACAG 122
||||||||||||||||.|||||||||.|||| |||.||||.|||||||||||||||||
Sbjct 5329 GGCTCACTGCAACCTCCGCCTCCTGGATTCA-----------------AGCTTCCCGAGTAGCTGGGATTACAG 5385
Query 123 ACGTG--TGCCACCATACCTGGGTAATTTTTGCATTTTTAGTGGAGAGGGAGTTTCACCATGTTGGCCAGGTTG 194
||| |||||||||.||.||.|||||||||.|||||||||.||||.||||||||||||||||.|.||||.||
Sbjct 5386 --GTGCATGCCACCATGCCCGGCTAATTTTTGTATTTTTAGTAGAGACGGAGTTTCACCATGTTAGTCAGGCTG 5457
Query 195 GTCT---------------------------------------------------------------------- 198
||||
Sbjct 5458 GTCTCAAACTCCTGACCTCGTGATCCACCCACCTCAACCTCCCAAAGTGCTGGGATTACAAGCGTGAGCCACTG 5531
Query 199 -------------------------------------------------------------------------- 198
Sbjct 5532 CGCCTGGCCTCCTGATTGCTTTTTAAGTAATTTTTTAAAAATAATTTTTCTCTTTATTATTAAATGTTAGAAAT 5605
Query 199 -------------------------------------------------------------------------- 198
Sbjct 5606 ATATGGAAACGTGGGCAAAAAGTAAAAATCACTCAAATCTCATTCCTAGAGTTAGTCACTATTAATATTTTGGT 5679
Query 199 -------------------------------------------------------------------------- 198
Sbjct 5680 GTATGTGTATTTCTTCCTTCAACATTCAGATTATATACTTTTTTGAAACTGGCTTTTTTCTCTTAATGTGAATT 5753
Query 199 ------------------------------ 198
Sbjct 5754 TCTCCATGTCATTAAATATTCTCCTAAAAA 5783
