Nucleotide Global Alignment

Description

Query:
ccsbBroad304_11616
Subject:
XR_001741933.1
Aligned Length:
5742
Identities:
160
Gaps:
5563

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  CGGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCGTGATCTGCCTGCCTTGGGCTCCTGAGT  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  GTTTTCAGATAAGTAGATATTAAGTGACTGACTGAGTAAAGGGATACACTGGATCTATGGAAGTCTTGATCCAA  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  AAAGCTCTCCATTGTCCAGTCAGACTCCCTTTTCCATCTCCAGGGCAGACCAGGGCATGGTATAAACTGACTCC  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  ACTCCTTGTGTGTAATACAGTGTCTTCCTAGAGAGGGCGTCTGTCATTCCACCCCCAGGGACTGCTTGGCATCT  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  GTGTGGCAGGGGCCATGCTGTTCCCCGCTGGGAGCACCATCCTACAGTAATCTCTGTGCAGGATGCTATTATAA  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  GAAAGACTTGGGACTTTGTCCCCACTCTGCAACCTCACACCCCAAACTGGGAAGGTGCTGAGAAACCGAAGATT  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  GGCTCGGACAAGTCCAGCTTGGCCAGTAGATGACTCTATTGAGGGCCCTCCTGGGTGGCGGCAGGACAGCTCTA  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  GAGGTTCGCACTGCTGCCATCACTAAGCAAAGTCTCTGGTTCCTGGCCTGCTGTGTGTGATGGGACTGCCTTCC  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  TGGGTAGGTTCCCAGATACTCCCAGGGACACACGCTCCTCGCTGGGCCCCCCTGGCCTTGGCTCCTTGCCTGGC  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  CTTCAGGGTTCAGGCAGTGGACATCCACCCCACGTGACATGGTGGGACACCTGTCACACCACCGATGCCCCTGC  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  AGATGGGCCACGCAACAGCCCTCGGGCCTTCCTGTCTCAGAGCAGGGCTGATCACAGTCAGGCCCACTGCAGTG  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  GAGAAAGACTGTGCAGAGCTAGACGCTGGACTCGGATCCTCTCTAGCGTGGGACAGGCACTGGGCACCCAGGTC  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  AGCTGCAGTTCCTGAGAGAGGGCAGCCCCAGAGTCAGAATCAAGGTGTCAATAATAGGAGAAACGATGGTGGGG  962

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  963  AGGAGACCAAGGCATTAATATAGGAACTCTGTATACTTTCCAGTCAATTTTTCCATAAAACTAAAACTGCTCTA  1036

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1037  AAAAAGGAGTCTGTTAATTTTTTAAAATCTCAAAAAGAATGTGGCTGGTGCCACAATGAACAATTTGAGTGAGA  1110

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1111  AGCTACTCAACGAGGTCAGAGGCATCAGAGAGGAAGAACACAGCAGCCTGTTTTCTTTGCTGCTCTTTACCGTT  1184

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1185  AGAAAGAACACTTTTACAACAGACTCTGTTTGAGGACAAACGCTCCACATTTTTGCCCGCTGGCAGCAGTCATA  1258

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1259  AATTATGAGATTTCTGAGGGGCACAAAACTGCAGCGGTCTAAACCAGGCAACAAAAATCAGCCAAGTCCTTATC  1332

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1333  AGGATCCCCTACAAATTCTATTGACTTTTTTGGATCTGTTTGTCCCTAGGTGTGAACTAGGGAAAAGTCAGGCG  1406

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1407  AGTCTGCCTTGCTAGTATATTTAAAAGAGGATCTTGGAGAATTTGAAAGAAAATGTGGAAGAAGAAATGACAGT  1480

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1481  GCTTGGTGAAAGTCAGCAGAAGGGCTTGATAATGGAACAGACTAAGGGTGGTGGATAGTTTTAAGGTTGAGAGA  1554

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1555  GAAATGGAATTAAAAAAAAGGGAGATATTCCTGGGGGCTTGAAGCAAGAAGCAGCAGCCGAGAGCAGCGCTGAT  1628

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1629  CAGGATGTGAAGGGAGCTTGGTGCGGAGGGCAGTGCTTCCTATGAGAAAAAGTCCAGTGGTCAATCTTTTGGGA  1702

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1703  AGGAGCTGGTGGGATGAGGGGGCAGCTGGACTGACCTGAGTGCTGTTGTACTGTCTGACCATCTCCTTTGTAAA  1776

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1777  CAGACGCTCCACACTCATGCTCAGAGCAGCATTATTCACAGCAGCCAGGAGGGGGACGTCGCCCAGGTGTTCCT  1850

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1851  CGGTGGATGAATGGATAAAGAAAATGTAAACACACAGTGGAATCTTACTCAGCCTTGAAAAGGAAGGAAAGTCC  1924

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1925  ATCCAACACATGCTACTGCATGGACGAACTTTGGACAGTGAGCTAAGTGAAAGGAGACAGTCACAAAAGGACAA  1998

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1999  ATACCAGATGATCCCACCTGCGCGAGATGATAACAAAACACCTATTTCTTTCCAGTTGGGAGGACAGCCATTCT  2072

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2073  CATCGGTATAATGAACGTATTGTAAGCTGTGACTTTTACAAAGTCTGAGGGAAACCAATCTGCAATCTTGACAG  2146

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2147  ATACGATCTTTCCAGATGCACTGTTCGTTTACGGCGGCAAGAGAGCTCAATTAATTTCTGAGGGAGGACGGCAG  2220

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2221  GATGCGACCCCTTGTGCGTGGCCTAGGAGGAACTGTCCCTGTGTGAATTTATGTTCTGGTAATTTAAAAAGATT  2294

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2295  TATATTAAGCTTTTCTTTCATTTTGAGAGTAGATTAAAATTCTAATGGAAACCATTTGTATGCATTTGTTGAAT  2368

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2369  TGAAGAGTATTTATGGCTGTGTAAAAAAAATGCTGCAAAATTCTGCCGATAATAAAGTCAGTGAAGCAAGAATA  2442

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2443  AGTGTAAAAACAGGAAGGAAATACGCGATAGAAACCATACTGTATTATACAAGTATAATGAGGGAGGCAAGCCG  2516

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2517  AGCAGAACGGGGCAGGGATTAGGCCCCCGGATGGGATAGTTTTTCTTATTTAGTGTAAGGCTTTTGTAGCCCTT  2590

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2591  TTATGACTTAAAACAAAATTTAAATTTTGAAACAGGCCAGGTCAGTCTGCACAGACCCCATGGCCACATCACTG  2664

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2665  TGTCACATCATTCTTGAACTCCTGCCGGTGTCTAGGACAAACAGGCAGGAAAGAAAATCCAAGCGGCGTCTCAG  2738

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2739  AGAAAAGATGCTGATGGCAGGAAAAGAAGACCCATGAAACAGGAGGCGGGGGTCAGCGAGCAAGGTGAAAATCA  2812

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2813  GAGCCCCGGAGTGCAGTGCAGGTGGAAGAGAGGTAGCAAAACCAGGGAAGTCGCCGTGCTCGGGACAGTCCAGT  2886

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2887  GTGTCCCTGGCATCCCCAGTCATTGCCGTGGCCACCTGATCAGAACCTGTACAGAAGCTGCCCCATCTCCTCCA  2960

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2961  CGGTGAGGGCCAAGTTGCATGTGCCACAGCCCTGTCGGTGACCTTTCTGCGGGCTGGGGAAGCAGAGACAACGG  3034

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3035  CCTGACAATCTGCAGGCACAGCCATCCAAGGGGACAGGGTCCATGCAACAGCCACCAGAGAAAGCTCCTCACTG  3108

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3109  CCACCTTTGCAGAGGGAGAAAAGCAGAAAGCATCGTGGAGGCCCTTTATCATGTTGGAAGGCCAGAGACATTTG  3182

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3183  GCATTCCGTCAAGGTCCATCTTAGAGTTGAGAGAGAGTTTCACCAGGAAACTCACATTCTCTCAGAACTAGCAG  3256

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3257  CCGTGATCGCATGTCGAAGTCAGGCAACGCCAAGCGTGATGGTTAACAGCGCTAAGACAGGAGAAAATGGAAAT  3330

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3331  TCCCTGAGAGTCCACTGCTCTGCTCCTGCGGCGGTGCTTTTCCCCCTCGTTGTAAGCATGCTCTTTACCAGAGC  3404

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3405  TGCACGGATGTCATAAACTGCCTCACGATGCACTAGAGCAGAATCGTGCGTTAGCAAATTTCACAGATGCAAAG  3478

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3479  TGGGATTTCTGTCAATGGAAGCCTGCATGGAAAATACGGAACAGCTTAAGAAAGTACTGTCTTCTCTCAAAATT  3552

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3553  CCACAGGAGCCTGAAATGCAGGGGTTCCGGCCTAGGCGTTTTTTGAGGCAAATAACGTCGCCACACGGCCGAGA  3626

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3627  TACAGGCCCCTTTTTGCCCCATGAGACTTACTGGCCTCAGAGTCCGGCCGCTTCTGTTTTGTTTCTTCATGTAT  3700

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3701  CCTTGGCTTCTAGCGCAGTTCCTGGTACACAGCAGGCGCTCAATACATATTTGCTGAGCTAAGCAAATATGTCC  3774

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3775  TAGGCCCTGTGGAAGATACGACATGAGGAAGACCAGGTCCCTGCCAAAAAGGCACCGAGGGCCCAGGCTGGGGA  3848

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3849  GGGTAGTGCTGACATCGAGTAGGCCTTCAGCTCTGACCCCAGCTTCATTTTAAGTGACTAGGAACAAATTCTCA  3922

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3923  AAACTTCTTTTCTATCAACTCTTCTTCACCCCCAATATCACAGCACAACTGTCTGTCATTGATGGAGTTCCTGC  3996

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3997  AATAAGACAAGCGCTAGAAGTTTACCATATTTGTATCCTTACTGGATTCCCAAATTAATCCTAGTAAGCAAGTG  4070

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 4071  ACATGATTGTTTTTAGTAGAGACAGGGTTTCACTTTGTTGGCCAGGCTAGTCTTGAACTCCTGACCTCAAGTGA  4144

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 4145  TCCACCCACCTCAGCCTCCCAAAGTGCTGGGATTAGGAAAATGAATACTTTTGCAAGCACAATGACAGGAGTGT  4218

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 4219  CAAAGGAGGTAGGCTCCACACTCTGATGTCTCTTTATCAGTGAGGCCTTTTCTGACTCCCTCACATGAAGAGCA  4292

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 4293  AACTCACTTCCCTTGTGCCAAAGCACTCAACATATATGACATCCCACACGGGGTAGGCTGAATCGTGGCCCTTA  4366

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 4367  AAGTATGTCCATGTTCCAATCCTTAGAACATGTGAATGTATTACCTTATGTGGCAAAATGGACTTTGCAGACAT  4440

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 4441  GATTAAGTTAAGGATCTTGAGATTTCAGGAAAATTATCTTGGATCATTCAGGTAGGCCTGACATAATCACAAGA  4514

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 4515  GCCCTTACAAGAGAGAGGCAGGAGGCCAGAGGCAGAGAGCTACACTGCGGAGCTGCTTTGCAGATGGAGGAAGG  4588

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 4589  GGCCACCGAGACCTGAGAAAGTCAAGGAGACAGATTCTCCCCTGGAGCCTCCAGAGGGAACCAGCCCTGCTCAC  4662

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 4663  ACCGTCATTTCAGCCCTGCAAGACTTGTTTGGGCTTCTGACGTCAAGAACTGGGACAGAATGAATTTGTGATGT  4736

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 4737  TTTAGGCCACTAGATCTGTGGTAATGTGTTATAGCAGAAATAGGAAACTAACACAACTCATCTCTACTTGTGTA  4810

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 4811  TATGTTTGTTATCCGTCTTCCTCTGCTGGGACATGAAATCCGCAACAAGTGGAGGCAAAGCCAGGGACTTTGTC  4884

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 4885  TATTATGTTGACTGGCATCCTTAGTGCTCAGAACAGAGCTCAGAATAATAAATATTTGTTGAATGAGCAAAGAC  4958

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 4959  GGAGGGGGCAGTCGCAGGAAGGGGGCCTACCGCGTGGCTAAGGGCCCTGAGGTATGAAAGATCTGAGATGCTGG  5032

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 5033  TGGACGTGGCTGCTTCCCGAGCTGAACTGGGGAAGTGGTGGGGAGGTGGGAGATGTCGGGGAGCTGATGCTGGG  5106

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 5107  GCAGTTTATACTTTATTCTGCAAATGAAGAATTATTGATGGGTTTCATGTAGAGTCATGATCATATTTCTTGAT  5180

Query    1  ----------------------------------------ATGGAGTCTCACTCTGTCACCCAGGCTGGAGTGC  34
                                                    |..|||||||||||||||.||.||||||||||||
Sbjct 5181  TGCGTTTTTTTTTTGTTTTGTTTTGTTTTGTTTTTTTGAGACAGAGTCTCACTCTGTCGCCGAGGCTGGAGTGC  5254

Query   35  AGTGGCGTGATCTTGGCTCACTGCAACCTCTGCCTCCTGGGTTCAAGCAATTCTCCCACCTCAGCCTCCCAAGT  108
            |||||.|.||||||||||||||||||||||.|||||||||.||||                 |||.||||.|||
Sbjct 5255  AGTGGTGCGATCTTGGCTCACTGCAACCTCCGCCTCCTGGATTCA-----------------AGCTTCCCGAGT  5311

Query  109  AGCTGGGATTACAGACGTG--TGCCACCATACCTGGGTAATTTTTGCATTTTTAGTGGAGAGGGAGTTTCACCA  180
            ||||||||||||||  |||  |||||||||.||.||.|||||||||.|||||||||.||||.||||||||||||
Sbjct 5312  AGCTGGGATTACAG--GTGCATGCCACCATGCCCGGCTAATTTTTGTATTTTTAGTAGAGACGGAGTTTCACCA  5383

Query  181  TGTTGGCCAGGTTGGTCT--------------------------------------------------------  198
            ||||.|.||||.||||||                                                        
Sbjct 5384  TGTTAGTCAGGCTGGTCTCAAACTCCTGACCTCGTGATCCACCCACCTCAACCTCCCAAAGTGCTGGGATTACA  5457

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 5458  AGCGTGAGCCACTGCGCCTGGCCTCCTGATTGCTTTTTAAGTAATTTTTTAAAAATAATTTTTCTCTTTATTAT  5531

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 5532  TAAATGTTAGAAATATATGGAAACGTGGGCAAAAAGTAAAAATCACTCAAATCTCATTCCTAGAGTTAGTCACT  5605

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 5606  ATTAATATTTTGGTGTATGTGTATTTCTTCCTTCAACATTCAGATTATATACTTTTTTGAAACTGGCTTTTTTC  5679

Query  199  --------------------------------------------  198
                                                        
Sbjct 5680  TCTTAATGTGAATTTCTCCATGTCATTAAATATTCTCCTAAAAA  5723

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