Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_11616
- Subject:
- XR_001741933.1
- Aligned Length:
- 5742
- Identities:
- 160
- Gaps:
- 5563
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 CGGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCGTGATCTGCCTGCCTTGGGCTCCTGAGT 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GTTTTCAGATAAGTAGATATTAAGTGACTGACTGAGTAAAGGGATACACTGGATCTATGGAAGTCTTGATCCAA 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 AAAGCTCTCCATTGTCCAGTCAGACTCCCTTTTCCATCTCCAGGGCAGACCAGGGCATGGTATAAACTGACTCC 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 ACTCCTTGTGTGTAATACAGTGTCTTCCTAGAGAGGGCGTCTGTCATTCCACCCCCAGGGACTGCTTGGCATCT 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 GTGTGGCAGGGGCCATGCTGTTCCCCGCTGGGAGCACCATCCTACAGTAATCTCTGTGCAGGATGCTATTATAA 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 GAAAGACTTGGGACTTTGTCCCCACTCTGCAACCTCACACCCCAAACTGGGAAGGTGCTGAGAAACCGAAGATT 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 GGCTCGGACAAGTCCAGCTTGGCCAGTAGATGACTCTATTGAGGGCCCTCCTGGGTGGCGGCAGGACAGCTCTA 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 GAGGTTCGCACTGCTGCCATCACTAAGCAAAGTCTCTGGTTCCTGGCCTGCTGTGTGTGATGGGACTGCCTTCC 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 TGGGTAGGTTCCCAGATACTCCCAGGGACACACGCTCCTCGCTGGGCCCCCCTGGCCTTGGCTCCTTGCCTGGC 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 CTTCAGGGTTCAGGCAGTGGACATCCACCCCACGTGACATGGTGGGACACCTGTCACACCACCGATGCCCCTGC 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 AGATGGGCCACGCAACAGCCCTCGGGCCTTCCTGTCTCAGAGCAGGGCTGATCACAGTCAGGCCCACTGCAGTG 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 GAGAAAGACTGTGCAGAGCTAGACGCTGGACTCGGATCCTCTCTAGCGTGGGACAGGCACTGGGCACCCAGGTC 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 AGCTGCAGTTCCTGAGAGAGGGCAGCCCCAGAGTCAGAATCAAGGTGTCAATAATAGGAGAAACGATGGTGGGG 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 AGGAGACCAAGGCATTAATATAGGAACTCTGTATACTTTCCAGTCAATTTTTCCATAAAACTAAAACTGCTCTA 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 AAAAAGGAGTCTGTTAATTTTTTAAAATCTCAAAAAGAATGTGGCTGGTGCCACAATGAACAATTTGAGTGAGA 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 AGCTACTCAACGAGGTCAGAGGCATCAGAGAGGAAGAACACAGCAGCCTGTTTTCTTTGCTGCTCTTTACCGTT 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 AGAAAGAACACTTTTACAACAGACTCTGTTTGAGGACAAACGCTCCACATTTTTGCCCGCTGGCAGCAGTCATA 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 AATTATGAGATTTCTGAGGGGCACAAAACTGCAGCGGTCTAAACCAGGCAACAAAAATCAGCCAAGTCCTTATC 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 AGGATCCCCTACAAATTCTATTGACTTTTTTGGATCTGTTTGTCCCTAGGTGTGAACTAGGGAAAAGTCAGGCG 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 AGTCTGCCTTGCTAGTATATTTAAAAGAGGATCTTGGAGAATTTGAAAGAAAATGTGGAAGAAGAAATGACAGT 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 GCTTGGTGAAAGTCAGCAGAAGGGCTTGATAATGGAACAGACTAAGGGTGGTGGATAGTTTTAAGGTTGAGAGA 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 GAAATGGAATTAAAAAAAAGGGAGATATTCCTGGGGGCTTGAAGCAAGAAGCAGCAGCCGAGAGCAGCGCTGAT 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 CAGGATGTGAAGGGAGCTTGGTGCGGAGGGCAGTGCTTCCTATGAGAAAAAGTCCAGTGGTCAATCTTTTGGGA 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 AGGAGCTGGTGGGATGAGGGGGCAGCTGGACTGACCTGAGTGCTGTTGTACTGTCTGACCATCTCCTTTGTAAA 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 CAGACGCTCCACACTCATGCTCAGAGCAGCATTATTCACAGCAGCCAGGAGGGGGACGTCGCCCAGGTGTTCCT 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 CGGTGGATGAATGGATAAAGAAAATGTAAACACACAGTGGAATCTTACTCAGCCTTGAAAAGGAAGGAAAGTCC 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 ATCCAACACATGCTACTGCATGGACGAACTTTGGACAGTGAGCTAAGTGAAAGGAGACAGTCACAAAAGGACAA 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 ATACCAGATGATCCCACCTGCGCGAGATGATAACAAAACACCTATTTCTTTCCAGTTGGGAGGACAGCCATTCT 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 CATCGGTATAATGAACGTATTGTAAGCTGTGACTTTTACAAAGTCTGAGGGAAACCAATCTGCAATCTTGACAG 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 ATACGATCTTTCCAGATGCACTGTTCGTTTACGGCGGCAAGAGAGCTCAATTAATTTCTGAGGGAGGACGGCAG 2220
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2221 GATGCGACCCCTTGTGCGTGGCCTAGGAGGAACTGTCCCTGTGTGAATTTATGTTCTGGTAATTTAAAAAGATT 2294
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2295 TATATTAAGCTTTTCTTTCATTTTGAGAGTAGATTAAAATTCTAATGGAAACCATTTGTATGCATTTGTTGAAT 2368
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2369 TGAAGAGTATTTATGGCTGTGTAAAAAAAATGCTGCAAAATTCTGCCGATAATAAAGTCAGTGAAGCAAGAATA 2442
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2443 AGTGTAAAAACAGGAAGGAAATACGCGATAGAAACCATACTGTATTATACAAGTATAATGAGGGAGGCAAGCCG 2516
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2517 AGCAGAACGGGGCAGGGATTAGGCCCCCGGATGGGATAGTTTTTCTTATTTAGTGTAAGGCTTTTGTAGCCCTT 2590
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2591 TTATGACTTAAAACAAAATTTAAATTTTGAAACAGGCCAGGTCAGTCTGCACAGACCCCATGGCCACATCACTG 2664
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2665 TGTCACATCATTCTTGAACTCCTGCCGGTGTCTAGGACAAACAGGCAGGAAAGAAAATCCAAGCGGCGTCTCAG 2738
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2739 AGAAAAGATGCTGATGGCAGGAAAAGAAGACCCATGAAACAGGAGGCGGGGGTCAGCGAGCAAGGTGAAAATCA 2812
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2813 GAGCCCCGGAGTGCAGTGCAGGTGGAAGAGAGGTAGCAAAACCAGGGAAGTCGCCGTGCTCGGGACAGTCCAGT 2886
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2887 GTGTCCCTGGCATCCCCAGTCATTGCCGTGGCCACCTGATCAGAACCTGTACAGAAGCTGCCCCATCTCCTCCA 2960
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2961 CGGTGAGGGCCAAGTTGCATGTGCCACAGCCCTGTCGGTGACCTTTCTGCGGGCTGGGGAAGCAGAGACAACGG 3034
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3035 CCTGACAATCTGCAGGCACAGCCATCCAAGGGGACAGGGTCCATGCAACAGCCACCAGAGAAAGCTCCTCACTG 3108
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3109 CCACCTTTGCAGAGGGAGAAAAGCAGAAAGCATCGTGGAGGCCCTTTATCATGTTGGAAGGCCAGAGACATTTG 3182
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3183 GCATTCCGTCAAGGTCCATCTTAGAGTTGAGAGAGAGTTTCACCAGGAAACTCACATTCTCTCAGAACTAGCAG 3256
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3257 CCGTGATCGCATGTCGAAGTCAGGCAACGCCAAGCGTGATGGTTAACAGCGCTAAGACAGGAGAAAATGGAAAT 3330
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3331 TCCCTGAGAGTCCACTGCTCTGCTCCTGCGGCGGTGCTTTTCCCCCTCGTTGTAAGCATGCTCTTTACCAGAGC 3404
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3405 TGCACGGATGTCATAAACTGCCTCACGATGCACTAGAGCAGAATCGTGCGTTAGCAAATTTCACAGATGCAAAG 3478
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3479 TGGGATTTCTGTCAATGGAAGCCTGCATGGAAAATACGGAACAGCTTAAGAAAGTACTGTCTTCTCTCAAAATT 3552
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3553 CCACAGGAGCCTGAAATGCAGGGGTTCCGGCCTAGGCGTTTTTTGAGGCAAATAACGTCGCCACACGGCCGAGA 3626
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3627 TACAGGCCCCTTTTTGCCCCATGAGACTTACTGGCCTCAGAGTCCGGCCGCTTCTGTTTTGTTTCTTCATGTAT 3700
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3701 CCTTGGCTTCTAGCGCAGTTCCTGGTACACAGCAGGCGCTCAATACATATTTGCTGAGCTAAGCAAATATGTCC 3774
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3775 TAGGCCCTGTGGAAGATACGACATGAGGAAGACCAGGTCCCTGCCAAAAAGGCACCGAGGGCCCAGGCTGGGGA 3848
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3849 GGGTAGTGCTGACATCGAGTAGGCCTTCAGCTCTGACCCCAGCTTCATTTTAAGTGACTAGGAACAAATTCTCA 3922
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3923 AAACTTCTTTTCTATCAACTCTTCTTCACCCCCAATATCACAGCACAACTGTCTGTCATTGATGGAGTTCCTGC 3996
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3997 AATAAGACAAGCGCTAGAAGTTTACCATATTTGTATCCTTACTGGATTCCCAAATTAATCCTAGTAAGCAAGTG 4070
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4071 ACATGATTGTTTTTAGTAGAGACAGGGTTTCACTTTGTTGGCCAGGCTAGTCTTGAACTCCTGACCTCAAGTGA 4144
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4145 TCCACCCACCTCAGCCTCCCAAAGTGCTGGGATTAGGAAAATGAATACTTTTGCAAGCACAATGACAGGAGTGT 4218
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4219 CAAAGGAGGTAGGCTCCACACTCTGATGTCTCTTTATCAGTGAGGCCTTTTCTGACTCCCTCACATGAAGAGCA 4292
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4293 AACTCACTTCCCTTGTGCCAAAGCACTCAACATATATGACATCCCACACGGGGTAGGCTGAATCGTGGCCCTTA 4366
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4367 AAGTATGTCCATGTTCCAATCCTTAGAACATGTGAATGTATTACCTTATGTGGCAAAATGGACTTTGCAGACAT 4440
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4441 GATTAAGTTAAGGATCTTGAGATTTCAGGAAAATTATCTTGGATCATTCAGGTAGGCCTGACATAATCACAAGA 4514
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4515 GCCCTTACAAGAGAGAGGCAGGAGGCCAGAGGCAGAGAGCTACACTGCGGAGCTGCTTTGCAGATGGAGGAAGG 4588
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4589 GGCCACCGAGACCTGAGAAAGTCAAGGAGACAGATTCTCCCCTGGAGCCTCCAGAGGGAACCAGCCCTGCTCAC 4662
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4663 ACCGTCATTTCAGCCCTGCAAGACTTGTTTGGGCTTCTGACGTCAAGAACTGGGACAGAATGAATTTGTGATGT 4736
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4737 TTTAGGCCACTAGATCTGTGGTAATGTGTTATAGCAGAAATAGGAAACTAACACAACTCATCTCTACTTGTGTA 4810
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4811 TATGTTTGTTATCCGTCTTCCTCTGCTGGGACATGAAATCCGCAACAAGTGGAGGCAAAGCCAGGGACTTTGTC 4884
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4885 TATTATGTTGACTGGCATCCTTAGTGCTCAGAACAGAGCTCAGAATAATAAATATTTGTTGAATGAGCAAAGAC 4958
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4959 GGAGGGGGCAGTCGCAGGAAGGGGGCCTACCGCGTGGCTAAGGGCCCTGAGGTATGAAAGATCTGAGATGCTGG 5032
Query 1 -------------------------------------------------------------------------- 0
Sbjct 5033 TGGACGTGGCTGCTTCCCGAGCTGAACTGGGGAAGTGGTGGGGAGGTGGGAGATGTCGGGGAGCTGATGCTGGG 5106
Query 1 -------------------------------------------------------------------------- 0
Sbjct 5107 GCAGTTTATACTTTATTCTGCAAATGAAGAATTATTGATGGGTTTCATGTAGAGTCATGATCATATTTCTTGAT 5180
Query 1 ----------------------------------------ATGGAGTCTCACTCTGTCACCCAGGCTGGAGTGC 34
|..|||||||||||||||.||.||||||||||||
Sbjct 5181 TGCGTTTTTTTTTTGTTTTGTTTTGTTTTGTTTTTTTGAGACAGAGTCTCACTCTGTCGCCGAGGCTGGAGTGC 5254
Query 35 AGTGGCGTGATCTTGGCTCACTGCAACCTCTGCCTCCTGGGTTCAAGCAATTCTCCCACCTCAGCCTCCCAAGT 108
|||||.|.||||||||||||||||||||||.|||||||||.|||| |||.||||.|||
Sbjct 5255 AGTGGTGCGATCTTGGCTCACTGCAACCTCCGCCTCCTGGATTCA-----------------AGCTTCCCGAGT 5311
Query 109 AGCTGGGATTACAGACGTG--TGCCACCATACCTGGGTAATTTTTGCATTTTTAGTGGAGAGGGAGTTTCACCA 180
|||||||||||||| ||| |||||||||.||.||.|||||||||.|||||||||.||||.||||||||||||
Sbjct 5312 AGCTGGGATTACAG--GTGCATGCCACCATGCCCGGCTAATTTTTGTATTTTTAGTAGAGACGGAGTTTCACCA 5383
Query 181 TGTTGGCCAGGTTGGTCT-------------------------------------------------------- 198
||||.|.||||.||||||
Sbjct 5384 TGTTAGTCAGGCTGGTCTCAAACTCCTGACCTCGTGATCCACCCACCTCAACCTCCCAAAGTGCTGGGATTACA 5457
Query 199 -------------------------------------------------------------------------- 198
Sbjct 5458 AGCGTGAGCCACTGCGCCTGGCCTCCTGATTGCTTTTTAAGTAATTTTTTAAAAATAATTTTTCTCTTTATTAT 5531
Query 199 -------------------------------------------------------------------------- 198
Sbjct 5532 TAAATGTTAGAAATATATGGAAACGTGGGCAAAAAGTAAAAATCACTCAAATCTCATTCCTAGAGTTAGTCACT 5605
Query 199 -------------------------------------------------------------------------- 198
Sbjct 5606 ATTAATATTTTGGTGTATGTGTATTTCTTCCTTCAACATTCAGATTATATACTTTTTTGAAACTGGCTTTTTTC 5679
Query 199 -------------------------------------------- 198
Sbjct 5680 TCTTAATGTGAATTTCTCCATGTCATTAAATATTCTCCTAAAAA 5723
