Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_11616
- Subject:
- XR_001741934.1
- Aligned Length:
- 5718
- Identities:
- 160
- Gaps:
- 5539
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 CGGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCGTGATCTGCCTGCCTTGGGCTCCTGAGT 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GTTTTCAGATAAGTAGATATTAAGTGACTGACTGAGTAAAGGGATACACTGGATCTATGGAAGTCTTGATCCAA 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 AAAGCTCTCCATTGTCCAGTCAGACTCCCTTTTCCATCTCCAGGGCAGACCAGGGCATGGTATAAACTGACTCC 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 ACTCCTTGTGTGTAATACAGTGTCTTCCTAGAGAGGGCGTCTGTCATTCCACCCCCAGGGACTGCTTGGCATCT 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 GTGTGGCAGGGGCCATGCTGTTCCCCGCTGGGAGCACCATCCTACAGTAATCTCTGTGCAGGATGCTATTATAA 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 GAAAGACTTGGGACTTTGTCCCCACTCTGCAACCTCACACCCCAAACTGGGAAGGTGCTGAGAAACCGAAGATT 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 GGCTCGGACAAGTCCAGCTTGGCCAGTAGATGACTCTATTGAGGGCCCTCCTGGGTGGCGGCAGGACAGCTCTA 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 GAGGTTCGCACTGCTGCCATCACTAAGCAAAGTCTCTGGTTCCTGGCCTGCTGTGTGTGATGGGACTGCCTTCC 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 TGGGTAGGTTCCCAGATACTCCCAGGGACACACGCTCCTCGCTGGGCCCCCCTGGCCTTGGCTCCTTGCCTGGC 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 CTTCAGGGTTCAGGCAGTGGACATCCACCCCACGTGACATGGTGGGACACCTGTCACACCACCGATGCCCCTGC 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 AGATGGGCCACGCAACAGCCCTCGGGCCTTCCTGTCTCAGAGCAGGGCTGATCACAGTCAGGCCCACTGCAGTG 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 GAGAAAGACTGTGCAGAGCTAGACGCTGGACTCGGATCCTCTCTAGCGTGGGACAGGCACTGGGCACCCAGGTC 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 AGCTGCAGTTCCTGAGAGAGGGCAGCCCCAGAGTCAGAATCAAGGTGTCAATAATAGGAGAAACGATGGTGGGG 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 AGGAGACCAAGGCATTAATATAGGAACTCTGTATACTTTCCAGTCAATTTTTCCATAAAACTAAAACTGCTCTA 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 AAAAAGGAGTCTGTTAATTTTTTAAAATCTCAAAAAGAATGTGGCTGGTGCCACAATGAACAATTTGAGTGAGA 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 AGCTACTCAACGAGGTCAGAGGCATCAGAGAGGAAGAACACAGCAGCCTGTTTTCTTTGCTGCTCTTTACCGTT 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 AGAAAGAACACTTTTACAACAGACTCTGTTTGAGGACAAACGCTCCACATTTTTGCCCGCTGGCAGCAGTCATA 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 AATTATGAGATTTCTGAGGGGCACAAAACTGCAGCGGTCTAAACCAGGCAACAAAAATCAGCCAAGTCCTTATC 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 AGGATCCCCTACAAATTCTATTGACTTTTTTGGATCTGTTTGTCCCTAGGTGTGAACTAGGGAAAAGTCAGGCG 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 AGTCTGCCTTGCTAGTATATTTAAAAGAGGATCTTGGAGAATTTGAAAGAAAATGTGGAAGAAGAAATGACAGT 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 GCTTGGTGAAAGTCAGCAGAAGGGCTTGATAATGGAACAGACTAAGGGTGGTGGATAGTTTTAAGGTTGAGAGA 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 GAAATGGAATTAAAAAAAAGGGAGATATTCCTGGGGGCTTGAAGCAAGAAGCAGCAGCCGAGAGCAGCGCTGAT 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 CAGGATGTGAAGGGAGCTTGGTGCGGAGGGCAGTGCTTCCTATGAGAAAAAGTCCAGTGGTCAATCTTTTGGGA 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 AGGAGCTGGTGGGATGAGGGGGCAGCTGGACTGACCTGAGTGCTGTTGTACTGTCTGACCATCTCCTTTGTAAA 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 CAGACGCTCCACACTCATGCTCAGAGCAGCATTATTCACAGCAGCCAGGAGGGGGACGTCGCCCAGGTGTTCCT 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 CGGTGGATGAATGGATAAAGAAAATGTAAACACACAGTGGAATCTTACTCAGCCTTGAAAAGGAAGGAAAGTCC 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 ATCCAACACATGCTACTGCATGGACGAACTTTGGACAGTGAGCTAAGTGAAAGGAGACAGTCACAAAAGGACAA 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 ATACCAGATGATCCCACCTGCGCGAGATGATTTGGGAGGACAGCCATTCTCATCGGTATAATGAACGTATTGTA 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 AGCTGTGACTTTTACAAAGTCTGAGGGAAACCAATCTGCAATCTTGACAGATACGATCTTTCCAGATGCACTGT 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 TCGTTTACGGCGGCAAGAGAGCTCAATTAATTTCTGAGGGAGGACGGCAGGATGCGACCCCTTGTGCGTGGCCT 2220
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2221 AGGAGGAACTGTCCCTGTGTGAATTTATGTTCTGGTAATTTAAAAAGATTTATATTAAGCTTTTCTTTCATTTT 2294
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2295 GAGAGTAGATTAAAATTCTAATGGAAACCATTTGTATGCATTTGTTGAATTGAAGAGTATTTATGGCTGTGTAA 2368
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2369 AAAAAATGCTGCAAAATTCTGCCGATAATAAAGTCAGTGAAGCAAGAATAAGTGTAAAAACAGGAAGGAAATAC 2442
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2443 GCGATAGAAACCATACTGTATTATACAAGTATAATGAGGGAGGCAAGCCGAGCAGAACGGGGCAGGGATTAGGC 2516
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2517 CCCCGGATGGGATAGTTTTTCTTATTTAGTGTAAGGCTTTTGTAGCCCTTTTATGACTTAAAACAAAATTTAAA 2590
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2591 TTTTGAAACAGGCCAGGTCAGTCTGCACAGACCCCATGGCCACATCACTGTGTCACATCATTCTTGAACTCCTG 2664
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2665 CCGGTGTCTAGGACAAACAGGCAGGAAAGAAAATCCAAGCGGCGTCTCAGAGAAAAGATGCTGATGGCAGGAAA 2738
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2739 AGAAGACCCATGAAACAGGAGGCGGGGGTCAGCGAGCAAGGTGAAAATCAGAGCCCCGGAGTGCAGTGCAGGTG 2812
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2813 GAAGAGAGGTAGCAAAACCAGGGAAGTCGCCGTGCTCGGGACAGTCCAGTGTGTCCCTGGCATCCCCAGTCATT 2886
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2887 GCCGTGGCCACCTGATCAGAACCTGTACAGAAGCTGCCCCATCTCCTCCACGGTGAGGGCCAAGTTGCATGTGC 2960
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2961 CACAGCCCTGTCGGTGACCTTTCTGCGGGCTGGGGAAGCAGAGACAACGGCCTGACAATCTGCAGGCACAGCCA 3034
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3035 TCCAAGGGGACAGGGTCCATGCAACAGCCACCAGAGAAAGCTCCTCACTGCCACCTTTGCAGAGGGAGAAAAGC 3108
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3109 AGAAAGCATCGTGGAGGCCCTTTATCATGTTGGAAGGCCAGAGACATTTGGCATTCCGTCAAGGTCCATCTTAG 3182
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3183 AGTTGAGAGAGAGTTTCACCAGGAAACTCACATTCTCTCAGAACTAGCAGCCGTGATCGCATGTCGAAGTCAGG 3256
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3257 CAACGCCAAGCGTGATGGTTAACAGCGCTAAGACAGGAGAAAATGGAAATTCCCTGAGAGTCCACTGCTCTGCT 3330
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3331 CCTGCGGCGGTGCTTTTCCCCCTCGTTGTAAGCATGCTCTTTACCAGAGCTGCACGGATGTCATAAACTGCCTC 3404
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3405 ACGATGCACTAGAGCAGAATCGTGCGTTAGCAAATTTCACAGATGCAAAGTGGGATTTCTGTCAATGGAAGCCT 3478
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3479 GCATGGAAAATACGGAACAGCTTAAGAAAGTACTGTCTTCTCTCAAAATTCCACAGGAGCCTGAAATGCAGGGG 3552
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3553 TTCCGGCCTAGGCGTTTTTTGAGGCAAATAACGTCGCCACACGGCCGAGATACAGGCCCCTTTTTGCCCCATGA 3626
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3627 GACTTACTGGCCTCAGAGTCCGGCCGCTTCTGTTTTGTTTCTTCATGTATCCTTGGCTTCTAGCGCAGTTCCTG 3700
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3701 GTACACAGCAGGCGCTCAATACATATTTGCTGAGCTAAGCAAATATGTCCTAGGCCCTGTGGAAGATACGACAT 3774
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3775 GAGGAAGACCAGGTCCCTGCCAAAAAGGCACCGAGGGCCCAGGCTGGGGAGGGTAGTGCTGACATCGAGTAGGC 3848
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3849 CTTCAGCTCTGACCCCAGCTTCATTTTAAGTGACTAGGAACAAATTCTCAAAACTTCTTTTCTATCAACTCTTC 3922
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3923 TTCACCCCCAATATCACAGCACAACTGTCTGTCATTGATGGAGTTCCTGCAATAAGACAAGCGCTAGAAGTTTA 3996
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3997 CCATATTTGTATCCTTACTGGATTCCCAAATTAATCCTAGTAAGCAAGTGACATGATTGTTTTTAGTAGAGACA 4070
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4071 GGGTTTCACTTTGTTGGCCAGGCTAGTCTTGAACTCCTGACCTCAAGTGATCCACCCACCTCAGCCTCCCAAAG 4144
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4145 TGCTGGGATTAGGAAAATGAATACTTTTGCAAGCACAATGACAGGAGTGTCAAAGGAGGTAGGCTCCACACTCT 4218
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4219 GATGTCTCTTTATCAGTGAGGCCTTTTCTGACTCCCTCACATGAAGAGCAAACTCACTTCCCTTGTGCCAAAGC 4292
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4293 ACTCAACATATATGACATCCCACACGGGGTAGGCTGAATCGTGGCCCTTAAAGTATGTCCATGTTCCAATCCTT 4366
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4367 AGAACATGTGAATGTATTACCTTATGTGGCAAAATGGACTTTGCAGACATGATTAAGTTAAGGATCTTGAGATT 4440
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4441 TCAGGAAAATTATCTTGGATCATTCAGGTAGGCCTGACATAATCACAAGAGCCCTTACAAGAGAGAGGCAGGAG 4514
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4515 GCCAGAGGCAGAGAGCTACACTGCGGAGCTGCTTTGCAGATGGAGGAAGGGGCCACCGAGACCTGAGAAAGTCA 4588
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4589 AGGAGACAGATTCTCCCCTGGAGCCTCCAGAGGGAACCAGCCCTGCTCACACCGTCATTTCAGCCCTGCAAGAC 4662
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4663 TTGTTTGGGCTTCTGACGTCAAGAACTGGGACAGAATGAATTTGTGATGTTTTAGGCCACTAGATCTGTGGTAA 4736
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4737 TGTGTTATAGCAGAAATAGGAAACTAACACAACTCATCTCTACTTGTGTATATGTTTGTTATCCGTCTTCCTCT 4810
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4811 GCTGGGACATGAAATCCGCAACAAGTGGAGGCAAAGCCAGGGACTTTGTCTATTATGTTGACTGGCATCCTTAG 4884
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4885 TGCTCAGAACAGAGCTCAGAATAATAAATATTTGTTGAATGAGCAAAGACGGAGGGGGCAGTCGCAGGAAGGGG 4958
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4959 GCCTACCGCGTGGCTAAGGGCCCTGAGGTATGAAAGATCTGAGATGCTGGTGGACGTGGCTGCTTCCCGAGCTG 5032
Query 1 -------------------------------------------------------------------------- 0
Sbjct 5033 AACTGGGGAAGTGGTGGGGAGGTGGGAGATGTCGGGGAGCTGATGCTGGGGCAGTTTATACTTTATTCTGCAAA 5106
Query 1 -------------------------------------------------------------------------- 0
Sbjct 5107 TGAAGAATTATTGATGGGTTTCATGTAGAGTCATGATCATATTTCTTGATTGCGTTTTTTTTTTGTTTTGTTTT 5180
Query 1 ----------------ATGGAGTCTCACTCTGTCACCCAGGCTGGAGTGCAGTGGCGTGATCTTGGCTCACTGC 58
|..|||||||||||||||.||.|||||||||||||||||.|.||||||||||||||||
Sbjct 5181 GTTTTGTTTTTTTGAGACAGAGTCTCACTCTGTCGCCGAGGCTGGAGTGCAGTGGTGCGATCTTGGCTCACTGC 5254
Query 59 AACCTCTGCCTCCTGGGTTCAAGCAATTCTCCCACCTCAGCCTCCCAAGTAGCTGGGATTACAGACGTG--TGC 130
||||||.|||||||||.|||| |||.||||.||||||||||||||||| ||| |||
Sbjct 5255 AACCTCCGCCTCCTGGATTCA-----------------AGCTTCCCGAGTAGCTGGGATTACAG--GTGCATGC 5309
Query 131 CACCATACCTGGGTAATTTTTGCATTTTTAGTGGAGAGGGAGTTTCACCATGTTGGCCAGGTTGGTCT------ 198
||||||.||.||.|||||||||.|||||||||.||||.||||||||||||||||.|.||||.||||||
Sbjct 5310 CACCATGCCCGGCTAATTTTTGTATTTTTAGTAGAGACGGAGTTTCACCATGTTAGTCAGGCTGGTCTCAAACT 5383
Query 199 -------------------------------------------------------------------------- 198
Sbjct 5384 CCTGACCTCGTGATCCACCCACCTCAACCTCCCAAAGTGCTGGGATTACAAGCGTGAGCCACTGCGCCTGGCCT 5457
Query 199 -------------------------------------------------------------------------- 198
Sbjct 5458 CCTGATTGCTTTTTAAGTAATTTTTTAAAAATAATTTTTCTCTTTATTATTAAATGTTAGAAATATATGGAAAC 5531
Query 199 -------------------------------------------------------------------------- 198
Sbjct 5532 GTGGGCAAAAAGTAAAAATCACTCAAATCTCATTCCTAGAGTTAGTCACTATTAATATTTTGGTGTATGTGTAT 5605
Query 199 -------------------------------------------------------------------------- 198
Sbjct 5606 TTCTTCCTTCAACATTCAGATTATATACTTTTTTGAAACTGGCTTTTTTCTCTTAATGTGAATTTCTCCATGTC 5679
Query 199 -------------------- 198
Sbjct 5680 ATTAAATATTCTCCTAAAAA 5699
