Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_11616
- Subject:
- XR_001743693.2
- Aligned Length:
- 3546
- Identities:
- 170
- Gaps:
- 3352
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GTTACAATGATTACTTCAACACCGATTAAAGTGAATTTGAGGGTGCTTATGTGACATTTAGAAGAACTGCCCAG 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 AAAGCATTCACAAATACAGTCTAGAATTCAAACACGACGTCCAGGACATGGAGACACGGGTTAGGAAATCACTG 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 GTATCTTAGTGGTAGGTAAATCCTAGAGAACGAATTCTTTGAAAAAAGCCAAAAATTACTCATTTGAATTTTGC 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 AAACTACAGTTTCGCCGGGCTTCTTAGCGACAACTGCAGCTAAGTGTCGGGGACAGAAGAGAGACTGAAGTGGC 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 CCCGCAAGCCCCCTTTGGCAAAGCCCACTCCGAGACCATCCGGATCCCGACCTACACCAGAGCAAATGTCTAAT 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 GGTGAGAAGCCGCTTCACCACCCTACAGATCCGCGGTGCAGAGATTTCCCTGCTAAGGTCCTAACTCCTGAATG 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 GGTACGGCGAGTACACCCGAAGAATCGAAAGGTACTTATCCCCCACTCAGTTCTAGAGGAAGCAGCGAGGTGGG 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 CCAAGATGCGTGGTAAGGCCCAGGGACTCTTTGTCAACGAAGTCCGTTAAACTTTCCGCCCTCCCGGGGGCCTC 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 AGCGGGCCAATTCCACTCACTTCTCGGAGGCTCCGGCCCAGCATGGTCCTCGTGCCCAGCCTGCCACCACAGGA 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 GCCAGGCAAGGGGGAAAAAGAGGTCACCGGTCGCTAGTGATGTTACATGGGCGCAGCCATCTTTAATTGTCACT 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 GAGCCCTTCAACACCGAGTACTTGGATTGGTTGAATTGCAGCCCGAGGAAATGATCTTTGTAGGCGATTGGTTG 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 GCGCCGCAAAGCCATCCCGGCGGCTAAGGAGAGCGGGCAGGCAAGGAGATTCCGGGCCAGGGTCGCGGCGGCAG 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 TCGGCAAGCGTTCGATTCTCTGGCGTTGGATCGCGAGCGGTGTCTGCTTGTCCCGCCGAGGGCTCCCAGGACAG 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 GGCAGGGATCTAGGGGGTTTGCGCACCTGCTTTTTAATGCCCCGCCCCCCCTTTTTTTTTTAAAGTGGAGGGGG 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 TGAAAGTGAGGGAGGAGAATGGACAGAATACTGACTGGAACGTTAATTCGAGCATTTCATATGCGAAGAGCGGA 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 ATAACAGTTCCGTATTCTTCTTTCAGTTTCTCCATTAGATTAGCTTCATTTTCGAATGCTCCGTTTTGCATGCT 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 TAATTTTGAAACTAGCCCGTGGTTTGGCAGAATTTGACTGAATTCAGGGGTGAGAGTTTGATCCAGTCCAAGTG 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 TATTTGAATTTGAGCACGCAGTTCAACCAGTGTTTACAATGGAATTTCTGAAGACTTGTGTACTTAGAAGAAAT 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 GCATGCACTGCGGTTTGCTTCTGGAGAAGCAAAGTTGTCCAAAAGCCTTCAGTTAGAAGGATTAGTACTACCTC 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 TCCTAGGAGCACTGTCATGCCTGCTTGGGTGATAGATAAATATGGGAAGAATGAAGTGCTTCGATTCACTCAGA 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 ACATGATGATGCCTATCATACACTATCCAAATGAAGTCATTGTCAAAGTTCACGCTGCCAGTGTAAATCCTATA 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 GACGTTAATATGAGAAGTGGTTATGGAGCTACAGCTTTAAATATGAAGCGTGATCCTTTACACGTGAAAATCAA 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 AGGAGAAGAATTTCCTCTGACTCTGGGTCGGGATGTCTCTGGCGTGGTGATGGAATGTGGGCTTGATGTGAAAT 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 ACTTCAAGCCTGGAGATGAGGTCTGGGCTGCAGTTCCTCCTTGGAAACAAGGCACTCTTTCAGAGTTTGTTGTA 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 GTCAGTGGGAATGAGGTCTCTCACAAACCCAAATCACTCACTCATACTCAAGCTGCCTCTTTGCCATATGTGGC 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 TCTCACAGCCTGGTCTGCTATAAACAAAGTTGGTGGCCTGAATGACAAGAATTGCACAGGAAAACGTGTTCTAA 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 TCTTAGGCGCTTCAGGCGGAGTTGGTACTTTTGCTATACAGGTAATGAAAGCATGGGATGCTCATGTGACAGCA 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 GTTTGCTCCCAAGATGCCAGTGAACTTGTAAGGAAGCTTGGTGCAGACGATGTAATTGATTACAAATCTGGAAG 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 TGTGGAAGAGCAGTTGAAATCCTTAAAACCATTTGATTTTATCCTTGATAATGTTGGCGGATCCACTGAAACAT 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 GGGCTCCAGATTTTCTCAAGAAATGGTCAGGAGCCACCTATGTGACTTTGGTGACTCCTTTCCTCCTGAACATG 2220
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2221 GACCGATTGGGCATAGCAGATGGCATGTTGCAGACAGGAGTCACTGTAGGTTCAAAGGCATTAAAGCATTTCTG 2294
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2295 GAAAGGAGTCCATTATCGCTGGGCATTTTTCATGGCCAGTGGCCCATGTTTAGATGACATTGCAGAACTGGTGG 2368
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2369 ATGCGGGAAAGATCCGGCCAGTTATTGAACAAACCTTTCCTTTTTCTAAAGTTCCAGAAGCCTTCCTGAAGGTG 2442
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2443 GAAAGAGGACACGCACGAGGAAAGACTAGACAGGGTCTCGCTGTGTCACCCAGGCTGGAGTGCAGTGGCACAAT 2516
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2517 CACAGCTCACTGCAGCCTTGACCTTAAGCGATTCTCCTGCTTCAGCCTCTCAAGTAGGTAGGACTACAGCCTTC 2590
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2591 CAATGGAGCCCAAAGCTTGCCACTTTGATGTCAAATGTTTACATTTAGATATCTCTCCAATCAACCCATTGCAG 2664
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2665 TGTGCACTTCGAATATTCATTTACGGTAGGTCTCACTCTGTTGCCCAGGCTGAAGGGCAGTGGCACGATCACAG 2738
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2739 CTCACTGCAGCCTCAACCTCCCAGACTCAAGTGATCTCCCACCTCAGCCTCCTGAGTAGCTGGGACTACAGGCG 2812
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2813 TGCACCACCACACCCGACTAATTTTTGTGTTTTCAATAGAGACAGGGTTTCAACATGTTGCCCAGGCTTGTCTG 2886
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2887 GAACTGCTGGGTTCCAGTGATCTGCCCACTTTGACCTCCCAAAGTGCTAGGGTTACAGACGTGAGTCACTGCGC 2960
Query 1 -----------------------------------ATGGAGTCTCACTC-TGTCACCCAGGCTGGAGTGCAGTG 38
|||||||.|||||| |||||||||||||||||||||.||
Sbjct 2961 CCAGCTTCTGTGATTTTTTTTATTTTCTTTTTTAGATGGAGTTTCACTCTTGTCACCCAGGCTGGAGTGCACTG 3034
Query 39 GCGTGATCTTGGCTCACTGCAACCTCTGCCTCCTGGGTTCAAGCAATTCTCCCACCTCAGCCTCCCAAGTAGCT 112
|.|||||||..|||||||||||||||..|||||||||||||||..|||||||..|||||||||||..|||||||
Sbjct 3035 GTGTGATCTCAGCTCACTGCAACCTCCACCTCCTGGGTTCAAGTGATTCTCCTGCCTCAGCCTCCTGAGTAGCT 3108
Query 113 GGGATTACAGACGTGTG-----CCACCATACCTGGGTAATTTTTGCA-TTTTTAGTGGAGAGGGAGTTTCACCA 180
|||||||||| |.| ||||||.||||||.|||||||||.| ||||||||.||||..|.|||||||||
Sbjct 3109 GGGATTACAG----GGGCCCCACCACCACACCTGGCTAATTTTTGTATTTTTTAGTAGAGACAGGGTTTCACCA 3178
Query 181 TGTTGGCCAGGTTGGTCT-------------------------------------------------------- 198
.||||||||||.|||||.
Sbjct 3179 CGTTGGCCAGGCTGGTCCTGAACTCCTGACCTCAGGTGATCCACCCGCTTTGCCCTCCCAAAGTGCTGGGATTA 3252
Query 199 -------------------------------------------------------------------------- 198
Sbjct 3253 CAGGCAGGAGCCACTGCACCCAGCCCGGCCTGATTATTTTTTAAATAGATGTAGTCCACCCCAACATCTGTTGT 3326
Query 199 -------------------------------------------------------------------------- 198
Sbjct 3327 ACACAGGTAGACCATACCTATTGTTTTTGTGAATAAAAGAAAAATACTTTCTTAAAAACATGTATTACATTGAT 3400
Query 199 -------------------------------------------------------------------------- 198
Sbjct 3401 GGTACTCATTCATTTTTATATCTTATTCAAAAGTATTCGAAGTTGAGGGGAAAAAAATCTTTCCAAGTTGACCT 3474
Query 199 -------------------------------------------------------------------- 198
Sbjct 3475 TTAATCATTTGTATAACATCTGCCAGTCATTCCCAGCTAAAGGAAAATCCCAACCCTGAGCTCCAAAA 3542
