Nucleotide Global Alignment

Description

Query:
ccsbBroad304_11616
Subject:
XR_001743693.2
Aligned Length:
3546
Identities:
170
Gaps:
3352

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  GTTACAATGATTACTTCAACACCGATTAAAGTGAATTTGAGGGTGCTTATGTGACATTTAGAAGAACTGCCCAG  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  AAAGCATTCACAAATACAGTCTAGAATTCAAACACGACGTCCAGGACATGGAGACACGGGTTAGGAAATCACTG  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  GTATCTTAGTGGTAGGTAAATCCTAGAGAACGAATTCTTTGAAAAAAGCCAAAAATTACTCATTTGAATTTTGC  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  AAACTACAGTTTCGCCGGGCTTCTTAGCGACAACTGCAGCTAAGTGTCGGGGACAGAAGAGAGACTGAAGTGGC  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  CCCGCAAGCCCCCTTTGGCAAAGCCCACTCCGAGACCATCCGGATCCCGACCTACACCAGAGCAAATGTCTAAT  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  GGTGAGAAGCCGCTTCACCACCCTACAGATCCGCGGTGCAGAGATTTCCCTGCTAAGGTCCTAACTCCTGAATG  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  GGTACGGCGAGTACACCCGAAGAATCGAAAGGTACTTATCCCCCACTCAGTTCTAGAGGAAGCAGCGAGGTGGG  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  CCAAGATGCGTGGTAAGGCCCAGGGACTCTTTGTCAACGAAGTCCGTTAAACTTTCCGCCCTCCCGGGGGCCTC  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  AGCGGGCCAATTCCACTCACTTCTCGGAGGCTCCGGCCCAGCATGGTCCTCGTGCCCAGCCTGCCACCACAGGA  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  GCCAGGCAAGGGGGAAAAAGAGGTCACCGGTCGCTAGTGATGTTACATGGGCGCAGCCATCTTTAATTGTCACT  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  GAGCCCTTCAACACCGAGTACTTGGATTGGTTGAATTGCAGCCCGAGGAAATGATCTTTGTAGGCGATTGGTTG  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  GCGCCGCAAAGCCATCCCGGCGGCTAAGGAGAGCGGGCAGGCAAGGAGATTCCGGGCCAGGGTCGCGGCGGCAG  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  TCGGCAAGCGTTCGATTCTCTGGCGTTGGATCGCGAGCGGTGTCTGCTTGTCCCGCCGAGGGCTCCCAGGACAG  962

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  963  GGCAGGGATCTAGGGGGTTTGCGCACCTGCTTTTTAATGCCCCGCCCCCCCTTTTTTTTTTAAAGTGGAGGGGG  1036

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1037  TGAAAGTGAGGGAGGAGAATGGACAGAATACTGACTGGAACGTTAATTCGAGCATTTCATATGCGAAGAGCGGA  1110

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1111  ATAACAGTTCCGTATTCTTCTTTCAGTTTCTCCATTAGATTAGCTTCATTTTCGAATGCTCCGTTTTGCATGCT  1184

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1185  TAATTTTGAAACTAGCCCGTGGTTTGGCAGAATTTGACTGAATTCAGGGGTGAGAGTTTGATCCAGTCCAAGTG  1258

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1259  TATTTGAATTTGAGCACGCAGTTCAACCAGTGTTTACAATGGAATTTCTGAAGACTTGTGTACTTAGAAGAAAT  1332

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1333  GCATGCACTGCGGTTTGCTTCTGGAGAAGCAAAGTTGTCCAAAAGCCTTCAGTTAGAAGGATTAGTACTACCTC  1406

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1407  TCCTAGGAGCACTGTCATGCCTGCTTGGGTGATAGATAAATATGGGAAGAATGAAGTGCTTCGATTCACTCAGA  1480

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1481  ACATGATGATGCCTATCATACACTATCCAAATGAAGTCATTGTCAAAGTTCACGCTGCCAGTGTAAATCCTATA  1554

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1555  GACGTTAATATGAGAAGTGGTTATGGAGCTACAGCTTTAAATATGAAGCGTGATCCTTTACACGTGAAAATCAA  1628

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1629  AGGAGAAGAATTTCCTCTGACTCTGGGTCGGGATGTCTCTGGCGTGGTGATGGAATGTGGGCTTGATGTGAAAT  1702

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1703  ACTTCAAGCCTGGAGATGAGGTCTGGGCTGCAGTTCCTCCTTGGAAACAAGGCACTCTTTCAGAGTTTGTTGTA  1776

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1777  GTCAGTGGGAATGAGGTCTCTCACAAACCCAAATCACTCACTCATACTCAAGCTGCCTCTTTGCCATATGTGGC  1850

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1851  TCTCACAGCCTGGTCTGCTATAAACAAAGTTGGTGGCCTGAATGACAAGAATTGCACAGGAAAACGTGTTCTAA  1924

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1925  TCTTAGGCGCTTCAGGCGGAGTTGGTACTTTTGCTATACAGGTAATGAAAGCATGGGATGCTCATGTGACAGCA  1998

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1999  GTTTGCTCCCAAGATGCCAGTGAACTTGTAAGGAAGCTTGGTGCAGACGATGTAATTGATTACAAATCTGGAAG  2072

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2073  TGTGGAAGAGCAGTTGAAATCCTTAAAACCATTTGATTTTATCCTTGATAATGTTGGCGGATCCACTGAAACAT  2146

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2147  GGGCTCCAGATTTTCTCAAGAAATGGTCAGGAGCCACCTATGTGACTTTGGTGACTCCTTTCCTCCTGAACATG  2220

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2221  GACCGATTGGGCATAGCAGATGGCATGTTGCAGACAGGAGTCACTGTAGGTTCAAAGGCATTAAAGCATTTCTG  2294

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2295  GAAAGGAGTCCATTATCGCTGGGCATTTTTCATGGCCAGTGGCCCATGTTTAGATGACATTGCAGAACTGGTGG  2368

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2369  ATGCGGGAAAGATCCGGCCAGTTATTGAACAAACCTTTCCTTTTTCTAAAGTTCCAGAAGCCTTCCTGAAGGTG  2442

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2443  GAAAGAGGACACGCACGAGGAAAGACTAGACAGGGTCTCGCTGTGTCACCCAGGCTGGAGTGCAGTGGCACAAT  2516

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2517  CACAGCTCACTGCAGCCTTGACCTTAAGCGATTCTCCTGCTTCAGCCTCTCAAGTAGGTAGGACTACAGCCTTC  2590

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2591  CAATGGAGCCCAAAGCTTGCCACTTTGATGTCAAATGTTTACATTTAGATATCTCTCCAATCAACCCATTGCAG  2664

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2665  TGTGCACTTCGAATATTCATTTACGGTAGGTCTCACTCTGTTGCCCAGGCTGAAGGGCAGTGGCACGATCACAG  2738

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2739  CTCACTGCAGCCTCAACCTCCCAGACTCAAGTGATCTCCCACCTCAGCCTCCTGAGTAGCTGGGACTACAGGCG  2812

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2813  TGCACCACCACACCCGACTAATTTTTGTGTTTTCAATAGAGACAGGGTTTCAACATGTTGCCCAGGCTTGTCTG  2886

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2887  GAACTGCTGGGTTCCAGTGATCTGCCCACTTTGACCTCCCAAAGTGCTAGGGTTACAGACGTGAGTCACTGCGC  2960

Query    1  -----------------------------------ATGGAGTCTCACTC-TGTCACCCAGGCTGGAGTGCAGTG  38
                                               |||||||.|||||| |||||||||||||||||||||.||
Sbjct 2961  CCAGCTTCTGTGATTTTTTTTATTTTCTTTTTTAGATGGAGTTTCACTCTTGTCACCCAGGCTGGAGTGCACTG  3034

Query   39  GCGTGATCTTGGCTCACTGCAACCTCTGCCTCCTGGGTTCAAGCAATTCTCCCACCTCAGCCTCCCAAGTAGCT  112
            |.|||||||..|||||||||||||||..|||||||||||||||..|||||||..|||||||||||..|||||||
Sbjct 3035  GTGTGATCTCAGCTCACTGCAACCTCCACCTCCTGGGTTCAAGTGATTCTCCTGCCTCAGCCTCCTGAGTAGCT  3108

Query  113  GGGATTACAGACGTGTG-----CCACCATACCTGGGTAATTTTTGCA-TTTTTAGTGGAGAGGGAGTTTCACCA  180
            ||||||||||    |.|     ||||||.||||||.|||||||||.| ||||||||.||||..|.|||||||||
Sbjct 3109  GGGATTACAG----GGGCCCCACCACCACACCTGGCTAATTTTTGTATTTTTTAGTAGAGACAGGGTTTCACCA  3178

Query  181  TGTTGGCCAGGTTGGTCT--------------------------------------------------------  198
            .||||||||||.|||||.                                                        
Sbjct 3179  CGTTGGCCAGGCTGGTCCTGAACTCCTGACCTCAGGTGATCCACCCGCTTTGCCCTCCCAAAGTGCTGGGATTA  3252

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 3253  CAGGCAGGAGCCACTGCACCCAGCCCGGCCTGATTATTTTTTAAATAGATGTAGTCCACCCCAACATCTGTTGT  3326

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 3327  ACACAGGTAGACCATACCTATTGTTTTTGTGAATAAAAGAAAAATACTTTCTTAAAAACATGTATTACATTGAT  3400

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 3401  GGTACTCATTCATTTTTATATCTTATTCAAAAGTATTCGAAGTTGAGGGGAAAAAAATCTTTCCAAGTTGACCT  3474

Query  199  --------------------------------------------------------------------  198
                                                                                
Sbjct 3475  TTAATCATTTGTATAACATCTGCCAGTCATTCCCAGCTAAAGGAAAATCCCAACCCTGAGCTCCAAAA  3542

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