Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_11616
- Subject:
- XR_001747200.1
- Aligned Length:
- 4026
- Identities:
- 171
- Gaps:
- 3831
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GTGAGCCCGGAGCAGCGGCAGCGTCGGTGGCGTCGAGAGCGAGCGGGCCCGGGAACGGCGCGGGTGGTAGAGGA 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GGAGCCGCGGGCTCGATTCTCTAACCATGGCACAGGTAGAGAAACGTGGAGGTTTGCTCCGGAAATCTTCAGCC 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 TCCAAAAAACCACTGAAGGAAAAAGTGGTGCTGATGTATGATGAGATCTTCATGACAGAGGACCCCAGTAAGTG 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 CAGTCCTCGGTTTTGGGAGGAGCTCTTTCTCATGAAGGTGAATTTAGAGTACCTAGAAGGCAAGCTGGAATCTC 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 TTGATGGTGAGGAGTTAATGAAGATCAAGGACAATATTAATTGCTTATTCCAACACTGCATCCAGGCTCTGGGA 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 GAGGAGCATCCAATTCGGGTTGTCAATGCATTGCAGACCCTGTGCGCACTCATTCGAGGAGTCCATCAAAAGAA 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 TAAGTCTACCTCTGGGTTTGACATTATCAACATGCTGATGGGCTTTGACAAGGCGGAGCTGTGCATGAAGAACT 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 TGATGGAGAGTTTGGATTCATTGCTTTGTGCAGAAGGTTCTGAAAGTCTGAAGAGTTTATGTCTGAAACTTCTC 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 CTTTGCTTAGTGACCGTGACAGATAACATCAGCCAGAACACTATTCTCGAGTATGTAATGATCAACAGCATATT 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 TGAAGCAATTTTACAGATACTTTCCCATCCCCCAAGTCGTAGGGAGCATGGGTATGATGCTGTCGTCCTCTTGG 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 CTTTGCTGGTGAACTATAGAAAATATGAGTCTGTGAATCCTTATATTGTGAAGCTGTCTATCGTGGATGATGAG 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 GCCACACTCAATGGAATGGGACTTGTAATTGCTCAGGCTTTATCTGAGTACAACAGGCAGTATAAAGACAAGGA 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 AGAAGAACACCAAAGTGGTTTTTTCTCTGCTTTAACAAATATGGTGGGCAGCATGTTCATAGCAGATGCCCATG 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 AGAAAATCTCAGTACAAACCAATGAGGCCATTCTTCTGGCACTTTATGAAGCTGTTCATTTAAATCGCAACTTC 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 ATCACAGTATTAGCTCAGAGCCATCCAGAAATGGGCTTGGTGACGACCCCTGTCAGTCCTGCTCCTACAACCCC 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 AGTCACACCACTTGGGACCACACCGCCTTCCTCTGATGTTATAAGTTCTGTGGAACTCCCACTGGATGCAGATG 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 TACAGACCAGTAATCTACTGATAACCTTTTTAAAGTATAGCTCAATTGTCATGCAGGACACCAAAGATGAACAC 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 AGGCTTCACAGTGGCAAACTCTGTCTGATTATCCTTACATGTATTGCAGAGGATCAATATGCCAATGCATTTTT 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 GCATGATGACAACATGAATTTTCGAGTAAACTTACATAGAATGCCTATGAGACACAGGAAGAAGGCAGCAGACA 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 AGAATCTTCCCTGCCGTCCTTTAGTATGTGCAGTACTGGACCTGATGGTAGAGTTTATTGTAACACACATGATG 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 AAGGAGTTTCCTATGGATCTCTATATACGCTGCATCCAGGTAGTACACAAACTGCTCTGCTACCAGAAGAAGTG 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 TCGGGTACGCCTGCATTACACCTGGCGGGAGCTCTGGTCAGCCTTGATAAATTTGCTGAAGTTCCTTATGTCAA 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 ATGAGACTGTACTTTTGGCCAAACACAACATTTTTACATTAGCCCTTATGATTGTGAACCTATTTAATATGTTT 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 ATCACATATGGCGACACATTTCTGCCAACCCCCAGCAGCTATGATGAACTTTACTATGAGATTATCCGCATGCA 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 CCAGAGCTTTGACAACCTCTACTCCATGGAGCCATCATCAACCACTTTAACCCCAAAATTGAGTCCTACGCTGC 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 TGTGAATCACATATCCCAACTGTCAGAGGAGCAGGTGCTGGAGGTGGTGAGAGCCAACTATGACACGCTCACGC 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 TGAAGCTGCAGGATGGCCTGGACCAGTATGAGCGCTACTCAGAGCAGCACAAGGAAGCTGCCTTCTTCAAAGAG 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 CTGGTTCGATCCATTAGCACCAACGTCCGGAGAAACCTGGCCTTCCACACACTCAGCCAAGAAGTCCTGCTCAA 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 GGAGTTCTCCACTATCTCCTGAGGCCACGCCTACCTGAGCAGCCTCTGACTGCCCTTACCCATGAGGATCATGG 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 GCTGGAGGGGGAGCGAGGGGAGAGGGGGCTGCCCCCGAGGTTGGAGAGAAACACAGATACCAAGTTCTCTTGGT 2220
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2221 GAAGACCGCACTTCAATGGAGCTTGGGCAGCAGGGGCAGGAGGGTCAAGCCAGGGATAATCTTATTTGGGGAGG 2294
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2295 AATGGGTGGGCACAGTGGGGAGAGGCCTCCAGGAATGTGGGGACTTCCAGAGTGGGCTCCCTAAACAGCCCCTC 2368
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2369 ACATTTCCAATCTTGAGGTTACAAGCTGTAGCTACTGACTAATTTTCGGGAGCTGGTGAGGCAAGCCTCAGGGT 2442
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2443 AATGCCAGCACCCTGAAAGTCAGTGGCTCTGCTCGGCTTCTGAAAACAGATCAACTCTCAGATATAGCTGGAGC 2516
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2517 TACATCCTGCTTCCTTTGGGCCTGGGGCTGTGCTTGGCTTGAAATCTGTGTCCCCTGCCTGCACTGGCACTTTG 2590
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2591 TCCAGTCATCGGGACCTTTGGCTCAGATTTAGGGTAAGATAGGAATAGGGTACCTTTTTCCTTTTTTTTCTGAG 2664
Query 1 ATGGAGTCTCACTCTGTCACCCAGGCTGGAGTGCAGTGGCGTGATCTTGGC-TCACTGCAACCTCTGCCTCCTG 73
|.||||||||||||||||.|||||||||||.||||||||||||||||.||| |.||||||.||||.||.|||||
Sbjct 2665 ACGGAGTCTCACTCTGTCGCCCAGGCTGGAATGCAGTGGCGTGATCTCGGCTTTACTGCAGCCTCCGCTTCCTG 2738
Query 74 GGTTCAAGCAATTCTCCCACCTCAGCCTCCCAAGTAGCTGGGATTACAG--ACGTGTGCCACCATACCTGGGTA 145
|||||||||.|||||||..||||||||||||.|||||||||||.||||| .|||||||||| .||.||.||
Sbjct 2739 GGTTCAAGCGATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTACAGGAGCGTGTGCCAC---GCCCGGCTA 2809
Query 146 A-TTTTTGCATTTTTAGTGGAGAGGGAGTTTCACCATGTTGGCCAGGTTGGTCT-------------------- 198
| ||||||.|||||||||.||||.||.|||||||||||||..|||||.||||||
Sbjct 2810 ATTTTTTGTATTTTTAGTAGAGATGGGGTTTCACCATGTTACCCAGGATGGTCTCAATATCCTGAGTTCATGAT 2883
Query 199 -------------------------------------------------------------------------- 198
Sbjct 2884 CCACCCACCTTGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCACACCCAGCCAGTTTTCCTATTTTC 2957
Query 199 -------------------------------------------------------------------------- 198
Sbjct 2958 TGAATTCAGAATTGACTTCTCTGGGAAAACTGGAGATGAGAATCTGCCCAGTGCTCTGCTGTCCAGTCACCGCC 3031
Query 199 -------------------------------------------------------------------------- 198
Sbjct 3032 TTTTGAATTTTAGTTTTGGCACCAGGAGTACCGTTAGCTTTCCCCTTCTTCTGGCCCATTTGACTCATCAGCAC 3105
Query 199 -------------------------------------------------------------------------- 198
Sbjct 3106 AATAGGGTCACCACCTTAACTTTTAATTTCTAATCTGCTTTACTGTCTTTAGGGTGTGTATGAAATAAACATTG 3179
Query 199 -------------------------------------------------------------------------- 198
Sbjct 3180 ACAGGCTTTCTGGAGCCCTCAAGGTGCCTACTTTGCTGGTTCCCTTTCCAGCAGCTCCCCCACCTCCCTTAGCC 3253
Query 199 -------------------------------------------------------------------------- 198
Sbjct 3254 CCCCCTCCTCTGGCAGCCTCTCCTGCCTCTGCTGAGCTCCCCTCCACGTGTTCCACCCCCTTACCCTGCTGTTG 3327
Query 199 -------------------------------------------------------------------------- 198
Sbjct 3328 TTTACATCCAACCTGCCTGAGAATTTCCTCTGGGGAGGAATCTATTCCTGTCATGGTCTAGTGCCTGGGAGGGA 3401
Query 199 -------------------------------------------------------------------------- 198
Sbjct 3402 GAGAACTTTCTGGGGGTAGGGTGCCCTCCATCTGAAACAGGCCAGGTGAGCATCATGCATAAGGCCTCCATTCT 3475
Query 199 -------------------------------------------------------------------------- 198
Sbjct 3476 GTCCGCTCAGATTCTGGGTGGGGCCACAGGCAAATCTCCTGACTTATGGGGAGTTGGCTTGTGGTTCCTCCCTT 3549
Query 199 -------------------------------------------------------------------------- 198
Sbjct 3550 GGATAGCCTCCATGGAACCACTATAGGCTTTCCCAACAGCTGCCTCTGAAATAGCTGCTGCTTCGAGATCCTCC 3623
Query 199 -------------------------------------------------------------------------- 198
Sbjct 3624 CTTTTTAAAGCACTTTCTAAAGCCCTCAGGATGGCGGGAGCAAACAGCACTGGTATATTCTAGGAGTAAGTGCA 3697
Query 199 -------------------------------------------------------------------------- 198
Sbjct 3698 GGAATTCAGCAGTGAGAGCATGTCTGGGACCACCTGGACTGCCATCCATTTAACCTCAAATCTCTTTGGGATAC 3771
Query 199 -------------------------------------------------------------------------- 198
Sbjct 3772 TCGCCCTCCCTGGGAACCAGAGTTCTGGCTCTAACATTGAGCAGCTATGCACTAGTTCCAGAGAAGCCACTAAC 3845
Query 199 -------------------------------------------------------------------------- 198
Sbjct 3846 AGGCTGCCATGTGTAGATGTAGGTTCTTAAGAGATCACAGGCTGGGTCATCTGATCACTGGATGGATAGCTCAG 3919
Query 199 -------------------------------------------------------------------------- 198
Sbjct 3920 CCTGGGGCATTTAGTGTTTTCCCTGGTGATAAATCCCCAAGGCAGCTGGATTTGGAGCTGGTGGCAAGTTGAAA 3993
Query 199 ------------------------------ 198
Sbjct 3994 TTATTAAAAATTGATTTGTGTGGGACTGTC 4023
