Nucleotide Global Alignment

Description

Query:
ccsbBroad304_11616
Subject:
XR_001747201.1
Aligned Length:
4581
Identities:
171
Gaps:
4386

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  GTGAGCCCGGAGCAGCGGCAGCGTCGGTGGCGTCGAGAGCGAGCGGGCCCGGGAACGGCGCGGGTGGTAGAGGA  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  GGAGCCGCGGGCTCGATTCTCTAACCATGGCACAGGTAGAGAAACGTGGAGGTTTGCTCCGGAAATCTTCAGCC  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  TCCAAAAAACCACTGAAGGAAAAAGTGGTGCTGATGTATGATGAGATCTTCATGACAGAGGACCCCAGTAAGTG  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  CAGTCCTCGGTTTTGGGAGGAGCTCTTTCTCATGAAGGTGAATTTAGAGTACCTAGAAGGCAAGCTGGAATCTC  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  TTGATGGTGAGGAGTTAATGAAGATCAAGGACAATATTAATTGCTTATTCCAACACTGCATCCAGGCTCTGGGA  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  GAGGAGCATCCAATTCGGGTTGTCAATGCATTGCAGACCCTGTGCGCACTCATTCGAGGAGTCCATCAAAAGAA  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  TAAGTCTACCTCTGGGTTTGACATTATCAACATGCTGATGGGCTTTGACAAGGCGGAGCTGTGCATGAAGAACT  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  TGATGGAGAGTTTGGATTCATTGCTTTGTGCAGAAGGTTCTGAAAGTCTGAAGAGTTTATGTCTGAAACTTCTC  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  CTTTGCTTAGTGACCGTGACAGATAACATCAGCCAGAACACTATTCTCGAGTATGTAATGATCAACAGCATATT  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  TGAAGCAATTTTACAGATACTTTCCCATCCCCCAAGTCGTAGGGAGCATGGGTATGATGCTGTCGTCCTCTTGG  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  CTTTGCTGGTGAACTATAGAAAATATGAGTCTGTGAATCCTTATATTGTGAAGCTGTCTATCGTGGATGATGAG  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  GCCACACTCAATGGAATGGGACTTGTAATTGCTCAGGCTTTATCTGAGTACAACAGGCAGTATAAAGACAAGGA  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  AGAAGAACACCAAAGTGGTTTTTTCTCTGCTTTAACAAATATGGTGGGCAGCATGTTCATAGCAGATGCCCATG  962

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  963  AGAAAATCTCAGTACAAACCAATGAGGCCATTCTTCTGGCACTTTATGAAGCTGTTCATTTAAATCGCAACTTC  1036

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1037  ATCACAGTATTAGCTCAGAGCCATCCAGAAATGGGCTTGGTGACGACCCCTGTCAGTCCTGCTCCTACAACCCC  1110

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1111  AGTCACACCACTTGGGACCACACCGCCTTCCTCTGATGTTATAAGTTCTGTGGAACTCCCACTGGATGCAGATG  1184

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1185  TACAGACCAGTAATCTACTGATAACCTTTTTAAAGTATAGCTCAATTGTCATGCAGGACACCAAAGATGAACAC  1258

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1259  AGGCTTCACAGTGGCAAACTCTGTCTGATTATCCTTACATGTATTGCAGAGGATCAATATGCCAATGCATTTTT  1332

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1333  GCATGATGACAACATGAATTTTCGAGTAAACTTACATAGAATGCCTATGAGACACAGGAAGAAGGCAGCAGACA  1406

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1407  AGAATCTTCCCTGCCGTCCTTTAGTATGTGCAGTACTGGACCTGATGGTAGAGTTTATTGTAACACACATGATG  1480

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1481  AAGGAGTTTCCTATGGATCTCTATATACGCTGCATCCAGGTAGTACACAAACTGCTCTGCTACCAGAAGAAGTG  1554

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1555  TCGGGTACGCCTGCATTACACCTGGCGGGAGCTCTGGTCAGACTTATGGATTTGAGGGAGCTGTGTGAAACTCA  1628

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1629  TCATGGCAAATATGCTTATGTGTATATATCCTTTGCCATACATGTGCTGCAAACTGTAATGAAATGTTATTTAT  1702

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1703  AAGACTGGTAAGGCATGTGTTATTAGACTGGACACACAAAAGCCCTTGATTATCTAGGAAGCAATCCTCTAGGG  1776

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1777  TCCAGATGTAGTTTGGAATGTGGGTGTTTAGTATCACTGTACTTCATTACTGATTTTTATTTCTATGCTGTTTG  1850

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1851  ACTGTATTAGCTCTTTGTTATTATTGGGGAGGTAGCCAGAGGTCTCCAGATTCCCATAATGAATTTACAGGTGT  1924

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1925  GATCTTATGGACAAGGAGGAGTCAGCTGTATTAGTTGGGGGTTCAATCTTGCCTGATAAGCTTTTCCTAGTTGG  1998

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1999  TTTTACAGATACGAGCCCTGATCTACTCCCTGCTGCCACTGTCTGTTTCTATGATGCATGTCACCATGATATCT  2072

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2073  GACCTTGATAAATTTGCTGAAGTTCCTTATGTCAAATGAGACTGTACTTTTGGCCAAACACAACATTTTTACAT  2146

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2147  TAGCCCTTATGATTGTGAACCTATTTAATATGTTTATCACATATGGCGACACATTTCTGCCAACCCCCAGCAGC  2220

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2221  TATGATGAACTTTACTATGAGATTATCCGCATGCACCAGAGCTTTGACAACCTCTACTCCATGGTCCTGAGGCT  2294

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2295  TTCTACCAATGCAGGCCAGTGGAAGGAAGCAGCTAGCAAGGTGACCCATGCATTGGTTAATATCAGAGCCATCA  2368

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2369  TCAACCACTTTAACCCCAAAATTGAGTCCTACGCTGCTGTGAATCACATATCCCAACTGTCAGAGGAGCAGGTG  2442

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2443  CTGGAGGTGGTGAGAGCCAACTATGACACGCTCACGCTGAAGCTGCAGGATGGCCTGGACCAGTATGAGCGCTA  2516

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2517  CTCAGAGCAGCACAAGGAAGCTGCCTTCTTCAAAGAGCTGGTTCGATCCATTAGCACCAACGTCCGGAGAAACC  2590

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2591  TGGCCTTCCACACACTCAGCCAAGAAGTCCTGCTCAAGGAGTTCTCCACTATCTCCTGAGGCCACGCCTACCTG  2664

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2665  AGCAGCCTCTGACTGCCCTTACCCATGAGGATCATGGGCTGGAGGGGGAGCGAGGGGAGAGGGGGCTGCCCCCG  2738

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2739  AGGTTGGAGAGAAACACAGATACCAAGTTCTCTTGGTGAAGACCGCACTTCAATGGAGCTTGGGCAGCAGGGGC  2812

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2813  AGGAGGGTCAAGCCAGGGATAATCTTATTTGGGGAGGAATGGGTGGGCACAGTGGGGAGAGGCCTCCAGGAATG  2886

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2887  TGGGGACTTCCAGAGTGGGCTCCCTAAACAGCCCCTCACATTTCCAATCTTGAGGTTACAAGCTGTAGCTACTG  2960

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2961  ACTAATTTTCGGGAGCTGGTGAGGCAAGCCTCAGGGTAATGCCAGCACCCTGAAAGTCAGTGGCTCTGCTCGGC  3034

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3035  TTCTGAAAACAGATCAACTCTCAGATATAGCTGGAGCTACATCCTGCTTCCTTTGGGCCTGGGGCTGTGCTTGG  3108

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3109  CTTGAAATCTGTGTCCCCTGCCTGCACTGGCACTTTGTCCAGTCATCGGGACCTTTGGCTCAGATTTAGGGTAA  3182

Query    1  -------------------------------------ATGGAGTCTCACTCTGTCACCCAGGCTGGAGTGCAGT  37
                                                 |.||||||||||||||||.|||||||||||.||||||
Sbjct 3183  GATAGGAATAGGGTACCTTTTTCCTTTTTTTTCTGAGACGGAGTCTCACTCTGTCGCCCAGGCTGGAATGCAGT  3256

Query   38  GGCGTGATCTTGGC-TCACTGCAACCTCTGCCTCCTGGGTTCAAGCAATTCTCCCACCTCAGCCTCCCAAGTAG  110
            ||||||||||.||| |.||||||.||||.||.||||||||||||||.|||||||..||||||||||||.|||||
Sbjct 3257  GGCGTGATCTCGGCTTTACTGCAGCCTCCGCTTCCTGGGTTCAAGCGATTCTCCTGCCTCAGCCTCCCGAGTAG  3330

Query  111  CTGGGATTACAG--ACGTGTGCCACCATACCTGGGTAA-TTTTTGCATTTTTAGTGGAGAGGGAGTTTCACCAT  181
            ||||||.|||||  .||||||||||   .||.||.||| ||||||.|||||||||.||||.||.||||||||||
Sbjct 3331  CTGGGACTACAGGAGCGTGTGCCAC---GCCCGGCTAATTTTTTGTATTTTTAGTAGAGATGGGGTTTCACCAT  3401

Query  182  GTTGGCCAGGTTGGTCT---------------------------------------------------------  198
            |||..|||||.||||||                                                         
Sbjct 3402  GTTACCCAGGATGGTCTCAATATCCTGAGTTCATGATCCACCCACCTTGGCCTCCCAAAGTGCTGGGATTACAG  3475

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 3476  GCGTGAGCCACCACACCCAGCCAGTTTTCCTATTTTCTGAATTCAGAATTGACTTCTCTGGGAAAACTGGAGAT  3549

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 3550  GAGAATCTGCCCAGTGCTCTGCTGTCCAGTCACCGCCTTTTGAATTTTAGTTTTGGCACCAGGAGTACCGTTAG  3623

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 3624  CTTTCCCCTTCTTCTGGCCCATTTGACTCATCAGCACAATAGGGTCACCACCTTAACTTTTAATTTCTAATCTG  3697

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 3698  CTTTACTGTCTTTAGGGTGTGTATGAAATAAACATTGACAGGCTTTCTGGAGCCCTCAAGGTGCCTACTTTGCT  3771

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 3772  GGTTCCCTTTCCAGCAGCTCCCCCACCTCCCTTAGCCCCCCCTCCTCTGGCAGCCTCTCCTGCCTCTGCTGAGC  3845

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 3846  TCCCCTCCACGTGTTCCACCCCCTTACCCTGCTGTTGTTTACATCCAACCTGCCTGAGAATTTCCTCTGGGGAG  3919

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 3920  GAATCTATTCCTGTCATGGTCTAGTGCCTGGGAGGGAGAGAACTTTCTGGGGGTAGGGTGCCCTCCATCTGAAA  3993

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 3994  CAGGCCAGGTGAGCATCATGCATAAGGCCTCCATTCTGTCCGCTCAGATTCTGGGTGGGGCCACAGGCAAATCT  4067

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 4068  CCTGACTTATGGGGAGTTGGCTTGTGGTTCCTCCCTTGGATAGCCTCCATGGAACCACTATAGGCTTTCCCAAC  4141

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 4142  AGCTGCCTCTGAAATAGCTGCTGCTTCGAGATCCTCCCTTTTTAAAGCACTTTCTAAAGCCCTCAGGATGGCGG  4215

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 4216  GAGCAAACAGCACTGGTATATTCTAGGAGTAAGTGCAGGAATTCAGCAGTGAGAGCATGTCTGGGACCACCTGG  4289

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 4290  ACTGCCATCCATTTAACCTCAAATCTCTTTGGGATACTCGCCCTCCCTGGGAACCAGAGTTCTGGCTCTAACAT  4363

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 4364  TGAGCAGCTATGCACTAGTTCCAGAGAAGCCACTAACAGGCTGCCATGTGTAGATGTAGGTTCTTAAGAGATCA  4437

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 4438  CAGGCTGGGTCATCTGATCACTGGATGGATAGCTCAGCCTGGGGCATTTAGTGTTTTCCCTGGTGATAAATCCC  4511

Query  199  -------------------------------------------------------------------  198
                                                                               
Sbjct 4512  CAAGGCAGCTGGATTTGGAGCTGGTGGCAAGTTGAAATTATTAAAAATTGATTTGTGTGGGACTGTC  4578

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