Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_11616
- Subject:
- XR_001747201.1
- Aligned Length:
- 4581
- Identities:
- 171
- Gaps:
- 4386
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GTGAGCCCGGAGCAGCGGCAGCGTCGGTGGCGTCGAGAGCGAGCGGGCCCGGGAACGGCGCGGGTGGTAGAGGA 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GGAGCCGCGGGCTCGATTCTCTAACCATGGCACAGGTAGAGAAACGTGGAGGTTTGCTCCGGAAATCTTCAGCC 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 TCCAAAAAACCACTGAAGGAAAAAGTGGTGCTGATGTATGATGAGATCTTCATGACAGAGGACCCCAGTAAGTG 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 CAGTCCTCGGTTTTGGGAGGAGCTCTTTCTCATGAAGGTGAATTTAGAGTACCTAGAAGGCAAGCTGGAATCTC 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 TTGATGGTGAGGAGTTAATGAAGATCAAGGACAATATTAATTGCTTATTCCAACACTGCATCCAGGCTCTGGGA 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 GAGGAGCATCCAATTCGGGTTGTCAATGCATTGCAGACCCTGTGCGCACTCATTCGAGGAGTCCATCAAAAGAA 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 TAAGTCTACCTCTGGGTTTGACATTATCAACATGCTGATGGGCTTTGACAAGGCGGAGCTGTGCATGAAGAACT 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 TGATGGAGAGTTTGGATTCATTGCTTTGTGCAGAAGGTTCTGAAAGTCTGAAGAGTTTATGTCTGAAACTTCTC 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 CTTTGCTTAGTGACCGTGACAGATAACATCAGCCAGAACACTATTCTCGAGTATGTAATGATCAACAGCATATT 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 TGAAGCAATTTTACAGATACTTTCCCATCCCCCAAGTCGTAGGGAGCATGGGTATGATGCTGTCGTCCTCTTGG 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 CTTTGCTGGTGAACTATAGAAAATATGAGTCTGTGAATCCTTATATTGTGAAGCTGTCTATCGTGGATGATGAG 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 GCCACACTCAATGGAATGGGACTTGTAATTGCTCAGGCTTTATCTGAGTACAACAGGCAGTATAAAGACAAGGA 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 AGAAGAACACCAAAGTGGTTTTTTCTCTGCTTTAACAAATATGGTGGGCAGCATGTTCATAGCAGATGCCCATG 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 AGAAAATCTCAGTACAAACCAATGAGGCCATTCTTCTGGCACTTTATGAAGCTGTTCATTTAAATCGCAACTTC 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 ATCACAGTATTAGCTCAGAGCCATCCAGAAATGGGCTTGGTGACGACCCCTGTCAGTCCTGCTCCTACAACCCC 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 AGTCACACCACTTGGGACCACACCGCCTTCCTCTGATGTTATAAGTTCTGTGGAACTCCCACTGGATGCAGATG 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 TACAGACCAGTAATCTACTGATAACCTTTTTAAAGTATAGCTCAATTGTCATGCAGGACACCAAAGATGAACAC 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 AGGCTTCACAGTGGCAAACTCTGTCTGATTATCCTTACATGTATTGCAGAGGATCAATATGCCAATGCATTTTT 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 GCATGATGACAACATGAATTTTCGAGTAAACTTACATAGAATGCCTATGAGACACAGGAAGAAGGCAGCAGACA 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 AGAATCTTCCCTGCCGTCCTTTAGTATGTGCAGTACTGGACCTGATGGTAGAGTTTATTGTAACACACATGATG 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 AAGGAGTTTCCTATGGATCTCTATATACGCTGCATCCAGGTAGTACACAAACTGCTCTGCTACCAGAAGAAGTG 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 TCGGGTACGCCTGCATTACACCTGGCGGGAGCTCTGGTCAGACTTATGGATTTGAGGGAGCTGTGTGAAACTCA 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 TCATGGCAAATATGCTTATGTGTATATATCCTTTGCCATACATGTGCTGCAAACTGTAATGAAATGTTATTTAT 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 AAGACTGGTAAGGCATGTGTTATTAGACTGGACACACAAAAGCCCTTGATTATCTAGGAAGCAATCCTCTAGGG 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 TCCAGATGTAGTTTGGAATGTGGGTGTTTAGTATCACTGTACTTCATTACTGATTTTTATTTCTATGCTGTTTG 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 ACTGTATTAGCTCTTTGTTATTATTGGGGAGGTAGCCAGAGGTCTCCAGATTCCCATAATGAATTTACAGGTGT 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 GATCTTATGGACAAGGAGGAGTCAGCTGTATTAGTTGGGGGTTCAATCTTGCCTGATAAGCTTTTCCTAGTTGG 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 TTTTACAGATACGAGCCCTGATCTACTCCCTGCTGCCACTGTCTGTTTCTATGATGCATGTCACCATGATATCT 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 GACCTTGATAAATTTGCTGAAGTTCCTTATGTCAAATGAGACTGTACTTTTGGCCAAACACAACATTTTTACAT 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 TAGCCCTTATGATTGTGAACCTATTTAATATGTTTATCACATATGGCGACACATTTCTGCCAACCCCCAGCAGC 2220
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2221 TATGATGAACTTTACTATGAGATTATCCGCATGCACCAGAGCTTTGACAACCTCTACTCCATGGTCCTGAGGCT 2294
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2295 TTCTACCAATGCAGGCCAGTGGAAGGAAGCAGCTAGCAAGGTGACCCATGCATTGGTTAATATCAGAGCCATCA 2368
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2369 TCAACCACTTTAACCCCAAAATTGAGTCCTACGCTGCTGTGAATCACATATCCCAACTGTCAGAGGAGCAGGTG 2442
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2443 CTGGAGGTGGTGAGAGCCAACTATGACACGCTCACGCTGAAGCTGCAGGATGGCCTGGACCAGTATGAGCGCTA 2516
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2517 CTCAGAGCAGCACAAGGAAGCTGCCTTCTTCAAAGAGCTGGTTCGATCCATTAGCACCAACGTCCGGAGAAACC 2590
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2591 TGGCCTTCCACACACTCAGCCAAGAAGTCCTGCTCAAGGAGTTCTCCACTATCTCCTGAGGCCACGCCTACCTG 2664
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2665 AGCAGCCTCTGACTGCCCTTACCCATGAGGATCATGGGCTGGAGGGGGAGCGAGGGGAGAGGGGGCTGCCCCCG 2738
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2739 AGGTTGGAGAGAAACACAGATACCAAGTTCTCTTGGTGAAGACCGCACTTCAATGGAGCTTGGGCAGCAGGGGC 2812
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2813 AGGAGGGTCAAGCCAGGGATAATCTTATTTGGGGAGGAATGGGTGGGCACAGTGGGGAGAGGCCTCCAGGAATG 2886
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2887 TGGGGACTTCCAGAGTGGGCTCCCTAAACAGCCCCTCACATTTCCAATCTTGAGGTTACAAGCTGTAGCTACTG 2960
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2961 ACTAATTTTCGGGAGCTGGTGAGGCAAGCCTCAGGGTAATGCCAGCACCCTGAAAGTCAGTGGCTCTGCTCGGC 3034
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3035 TTCTGAAAACAGATCAACTCTCAGATATAGCTGGAGCTACATCCTGCTTCCTTTGGGCCTGGGGCTGTGCTTGG 3108
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3109 CTTGAAATCTGTGTCCCCTGCCTGCACTGGCACTTTGTCCAGTCATCGGGACCTTTGGCTCAGATTTAGGGTAA 3182
Query 1 -------------------------------------ATGGAGTCTCACTCTGTCACCCAGGCTGGAGTGCAGT 37
|.||||||||||||||||.|||||||||||.||||||
Sbjct 3183 GATAGGAATAGGGTACCTTTTTCCTTTTTTTTCTGAGACGGAGTCTCACTCTGTCGCCCAGGCTGGAATGCAGT 3256
Query 38 GGCGTGATCTTGGC-TCACTGCAACCTCTGCCTCCTGGGTTCAAGCAATTCTCCCACCTCAGCCTCCCAAGTAG 110
||||||||||.||| |.||||||.||||.||.||||||||||||||.|||||||..||||||||||||.|||||
Sbjct 3257 GGCGTGATCTCGGCTTTACTGCAGCCTCCGCTTCCTGGGTTCAAGCGATTCTCCTGCCTCAGCCTCCCGAGTAG 3330
Query 111 CTGGGATTACAG--ACGTGTGCCACCATACCTGGGTAA-TTTTTGCATTTTTAGTGGAGAGGGAGTTTCACCAT 181
||||||.||||| .|||||||||| .||.||.||| ||||||.|||||||||.||||.||.||||||||||
Sbjct 3331 CTGGGACTACAGGAGCGTGTGCCAC---GCCCGGCTAATTTTTTGTATTTTTAGTAGAGATGGGGTTTCACCAT 3401
Query 182 GTTGGCCAGGTTGGTCT--------------------------------------------------------- 198
|||..|||||.||||||
Sbjct 3402 GTTACCCAGGATGGTCTCAATATCCTGAGTTCATGATCCACCCACCTTGGCCTCCCAAAGTGCTGGGATTACAG 3475
Query 199 -------------------------------------------------------------------------- 198
Sbjct 3476 GCGTGAGCCACCACACCCAGCCAGTTTTCCTATTTTCTGAATTCAGAATTGACTTCTCTGGGAAAACTGGAGAT 3549
Query 199 -------------------------------------------------------------------------- 198
Sbjct 3550 GAGAATCTGCCCAGTGCTCTGCTGTCCAGTCACCGCCTTTTGAATTTTAGTTTTGGCACCAGGAGTACCGTTAG 3623
Query 199 -------------------------------------------------------------------------- 198
Sbjct 3624 CTTTCCCCTTCTTCTGGCCCATTTGACTCATCAGCACAATAGGGTCACCACCTTAACTTTTAATTTCTAATCTG 3697
Query 199 -------------------------------------------------------------------------- 198
Sbjct 3698 CTTTACTGTCTTTAGGGTGTGTATGAAATAAACATTGACAGGCTTTCTGGAGCCCTCAAGGTGCCTACTTTGCT 3771
Query 199 -------------------------------------------------------------------------- 198
Sbjct 3772 GGTTCCCTTTCCAGCAGCTCCCCCACCTCCCTTAGCCCCCCCTCCTCTGGCAGCCTCTCCTGCCTCTGCTGAGC 3845
Query 199 -------------------------------------------------------------------------- 198
Sbjct 3846 TCCCCTCCACGTGTTCCACCCCCTTACCCTGCTGTTGTTTACATCCAACCTGCCTGAGAATTTCCTCTGGGGAG 3919
Query 199 -------------------------------------------------------------------------- 198
Sbjct 3920 GAATCTATTCCTGTCATGGTCTAGTGCCTGGGAGGGAGAGAACTTTCTGGGGGTAGGGTGCCCTCCATCTGAAA 3993
Query 199 -------------------------------------------------------------------------- 198
Sbjct 3994 CAGGCCAGGTGAGCATCATGCATAAGGCCTCCATTCTGTCCGCTCAGATTCTGGGTGGGGCCACAGGCAAATCT 4067
Query 199 -------------------------------------------------------------------------- 198
Sbjct 4068 CCTGACTTATGGGGAGTTGGCTTGTGGTTCCTCCCTTGGATAGCCTCCATGGAACCACTATAGGCTTTCCCAAC 4141
Query 199 -------------------------------------------------------------------------- 198
Sbjct 4142 AGCTGCCTCTGAAATAGCTGCTGCTTCGAGATCCTCCCTTTTTAAAGCACTTTCTAAAGCCCTCAGGATGGCGG 4215
Query 199 -------------------------------------------------------------------------- 198
Sbjct 4216 GAGCAAACAGCACTGGTATATTCTAGGAGTAAGTGCAGGAATTCAGCAGTGAGAGCATGTCTGGGACCACCTGG 4289
Query 199 -------------------------------------------------------------------------- 198
Sbjct 4290 ACTGCCATCCATTTAACCTCAAATCTCTTTGGGATACTCGCCCTCCCTGGGAACCAGAGTTCTGGCTCTAACAT 4363
Query 199 -------------------------------------------------------------------------- 198
Sbjct 4364 TGAGCAGCTATGCACTAGTTCCAGAGAAGCCACTAACAGGCTGCCATGTGTAGATGTAGGTTCTTAAGAGATCA 4437
Query 199 -------------------------------------------------------------------------- 198
Sbjct 4438 CAGGCTGGGTCATCTGATCACTGGATGGATAGCTCAGCCTGGGGCATTTAGTGTTTTCCCTGGTGATAAATCCC 4511
Query 199 ------------------------------------------------------------------- 198
Sbjct 4512 CAAGGCAGCTGGATTTGGAGCTGGTGGCAAGTTGAAATTATTAAAAATTGATTTGTGTGGGACTGTC 4578
