Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_11616
- Subject:
- XR_001747202.1
- Aligned Length:
- 4220
- Identities:
- 171
- Gaps:
- 4025
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GTGAGCCCGGAGCAGCGGCAGCGTCGGTGGCGTCGAGAGCGAGCGGGCCCGGGAACGGCGCGGGTGGTAGAGGA 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GGAGCCGCGGGCTCGATTCTCTAACCATGGCACAGGTAGAGAAACGTGGAGGTTTGCTCCGGAAATCTTCAGCC 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 TCCAAAAAACCACTGAAGGAAAAAGTGGTGCTGATGTATGATGAGATCTTCATGACAGAGGACCCCAGTAAGTG 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 CAGTCCTCGGTTTTGGGAGGAGCTCTTTCTCATGAAGGTGAATTTAGAGTACCTAGAAGGCAAGCTGGAATCTC 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 TTGATGGTGAGGAGTTAATGAAGATCAAGGACAATATTAATTGCTTATTCCAACACTGCATCCAGGCTCTGGGA 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 GAGGAGCATCCAATTCGGGTTGTCAATGCATTGCAGACCCTGTGCGCACTCATTCGAGGAGTCCATCAAAAGAA 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 TAAGTCTACCTCTGGGTTTGACATTATCAACATGCTGATGGGCTTTGACAAGGCGGAGCTGTGCATGAAGAACT 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 TGATGGAGAGTTTGGATTCATTGCTTTGTGCAGAAGGTTCTGAAAGTCTGAAGAGTTTATGTCTGAAACTTCTC 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 CTTTGCTTAGTGACCGTGACAGATAACATCAGCCAGAACACTATTCTCGAGTATGTAATGATCAACAGCATATT 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 TGAAGCAATTTTACAGATACTTTCCCATCCCCCAAGTCGTAGGGAGCATGGGTATGATGCTGTCGTCCTCTTGG 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 CTTTGCTGGTGAACTATAGAAAATATGAGTCTGTGAATCCTTATATTGTGAAGCTGTCTATCGTGGATGATGAG 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 GCCACACTCAATGGAATGGGACTTGTAATTGCTCAGGCTTTATCTGAGTACAACAGGCAGTATAAAGACAAGGA 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 AGAAGAACACCAAAGTGGTTTTTTCTCTGCTTTAACAAATATGGTGGGCAGCATGTTCATAGCAGATGCCCATG 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 AGAAAATCTCAGTACAAACCAATGAGGCCATTCTTCTGGCACTTTATGAAGCTGTTCATTTAAATCGCAACTTC 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 ATCACAGTATTAGCTCAGAGCCATCCAGAAATGGGCTTGGTGACGACCCCTGTCAGTCCTGCTCCTACAACCCC 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 AGTCACACCACTTGGGACCACACCGCCTTCCTCTGATGTGGGAAGATCAAGTCAGCCCACTTTCAAATGACTGT 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 CTCCCTTGACAAAAGCTGCTGGGAAGAATTATGAAGCCAAAGATCAAGGAATGACTCTTCCTTAGGAAGAAGAT 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 TTTAATTTTTATAAGTTCTGTGGAACTCCCACTGGATGCAGATGTACAGACCAGTAATCTACTGATAACCTTTT 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 TAAAGTATAGCTCAATTGTCATGCAGGACACCAAAGATGAACACAGGCTTCACAGTGGCAAACTCTGTCTGATT 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 ATCCTTACATGTATTGCAGAGGATCAATATGCCAATGCATTTTTGCATGATGACAACATGAATTTTCGAGTAAA 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 CTTACATAGAATGCCTATGAGACACAGGAAGAAGGCAGCAGACAAGAATCTTCCCTGCCGTCCTTTAGTATGTG 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 CAGTACTGGACCTGATGGTAGAGTTTATTGTAACACACATGATGAAGGAGTTTCCTATGGATCTCTATATACGC 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 TGCATCCAGGTAGTACACAAACTGCTCTGCTACCAGAAGAAGTGTCGGGTACGCCTGCATTACACCTGGCGGGA 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 GCTCTGGTCAGCCTTGATAAATTTGCTGAAGTTCCTTATGTCAAATGAGACTGTACTTTTGGCCAAACACAACA 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 TTTTTACATTAGCCCTTATGATTGTGAACCTATTTAATATGTTTATCACATATGGCGACACATTTCTGCCAACC 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 CCCAGCAGCTATGATGAACTTTACTATGAGATTATCCGCATGCACCAGAGCTTTGACAACCTCTACTCCATGGT 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 CCTGAGGCTTTCTACCAATGCAGGCCAGTGGAAGGAAGCAGCTAGCAAGGTGACCCATGCATTGGTTAATATCA 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 GAGCCATCATCAACCACTTTAACCCCAAAATTGAGTCCTACGCTGCTGTGAATCACATATCCCAACTGTCAGAG 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 GAGCAGGTGCTGGAGGTGGTGAGAGCCAACTATGACACGCTCACGCTGAAGCTGCAGGATGGCCTGGACCAGTA 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 TGAGCGCTACTCAGAGCAGCACAAGGAAGCTGCCTTCTTCAAAGAGCTGGTTCGATCCATTAGCACCAACGTCC 2220
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2221 GGAGAAACCTGGCCTTCCACACACTCAGCCAAGAAGTCCTGCTCAAGGAGTTCTCCACTATCTCCTGAGGCCAC 2294
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2295 GCCTACCTGAGCAGCCTCTGACTGCCCTTACCCATGAGGATCATGGGCTGGAGGGGGAGCGAGGGGAGAGGGGG 2368
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2369 CTGCCCCCGAGGTTGGAGAGAAACACAGATACCAAGTTCTCTTGGTGAAGACCGCACTTCAATGGAGCTTGGGC 2442
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2443 AGCAGGGGCAGGAGGGTCAAGCCAGGGATAATCTTATTTGGGGAGGAATGGGTGGGCACAGTGGGGAGAGGCCT 2516
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2517 CCAGGAATGTGGGGACTTCCAGAGTGGGCTCCCTAAACAGCCCCTCACATTTCCAATCTTGAGGTTACAAGCTG 2590
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2591 TAGCTACTGACTAATTTTCGGGAGCTGGTGAGGCAAGCCTCAGGGTAATGCCAGCACCCTGAAAGTCAGTGGCT 2664
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2665 CTGCTCGGCTTCTGAAAACAGATCAACTCTCAGATATAGCTGGAGCTACATCCTGCTTCCTTTGGGCCTGGGGC 2738
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2739 TGTGCTTGGCTTGAAATCTGTGTCCCCTGCCTGCACTGGCACTTTGTCCAGTCATCGGGACCTTTGGCTCAGAT 2812
Query 1 ----------------------------------------------ATGGAGTCTCACTCTGTCACCCAGGCTG 28
|.||||||||||||||||.|||||||||
Sbjct 2813 TTAGGGTAAGATAGGAATAGGGTACCTTTTTCCTTTTTTTTCTGAGACGGAGTCTCACTCTGTCGCCCAGGCTG 2886
Query 29 GAGTGCAGTGGCGTGATCTTGGC-TCACTGCAACCTCTGCCTCCTGGGTTCAAGCAATTCTCCCACCTCAGCCT 101
||.||||||||||||||||.||| |.||||||.||||.||.||||||||||||||.|||||||..|||||||||
Sbjct 2887 GAATGCAGTGGCGTGATCTCGGCTTTACTGCAGCCTCCGCTTCCTGGGTTCAAGCGATTCTCCTGCCTCAGCCT 2960
Query 102 CCCAAGTAGCTGGGATTACAG--ACGTGTGCCACCATACCTGGGTAA-TTTTTGCATTTTTAGTGGAGAGGGAG 172
|||.|||||||||||.||||| .|||||||||| .||.||.||| ||||||.|||||||||.||||.||.|
Sbjct 2961 CCCGAGTAGCTGGGACTACAGGAGCGTGTGCCAC---GCCCGGCTAATTTTTTGTATTTTTAGTAGAGATGGGG 3031
Query 173 TTTCACCATGTTGGCCAGGTTGGTCT------------------------------------------------ 198
||||||||||||..|||||.||||||
Sbjct 3032 TTTCACCATGTTACCCAGGATGGTCTCAATATCCTGAGTTCATGATCCACCCACCTTGGCCTCCCAAAGTGCTG 3105
Query 199 -------------------------------------------------------------------------- 198
Sbjct 3106 GGATTACAGGCGTGAGCCACCACACCCAGCCAGTTTTCCTATTTTCTGAATTCAGAATTGACTTCTCTGGGAAA 3179
Query 199 -------------------------------------------------------------------------- 198
Sbjct 3180 ACTGGAGATGAGAATCTGCCCAGTGCTCTGCTGTCCAGTCACCGCCTTTTGAATTTTAGTTTTGGCACCAGGAG 3253
Query 199 -------------------------------------------------------------------------- 198
Sbjct 3254 TACCGTTAGCTTTCCCCTTCTTCTGGCCCATTTGACTCATCAGCACAATAGGGTCACCACCTTAACTTTTAATT 3327
Query 199 -------------------------------------------------------------------------- 198
Sbjct 3328 TCTAATCTGCTTTACTGTCTTTAGGGTGTGTATGAAATAAACATTGACAGGCTTTCTGGAGCCCTCAAGGTGCC 3401
Query 199 -------------------------------------------------------------------------- 198
Sbjct 3402 TACTTTGCTGGTTCCCTTTCCAGCAGCTCCCCCACCTCCCTTAGCCCCCCCTCCTCTGGCAGCCTCTCCTGCCT 3475
Query 199 -------------------------------------------------------------------------- 198
Sbjct 3476 CTGCTGAGCTCCCCTCCACGTGTTCCACCCCCTTACCCTGCTGTTGTTTACATCCAACCTGCCTGAGAATTTCC 3549
Query 199 -------------------------------------------------------------------------- 198
Sbjct 3550 TCTGGGGAGGAATCTATTCCTGTCATGGTCTAGTGCCTGGGAGGGAGAGAACTTTCTGGGGGTAGGGTGCCCTC 3623
Query 199 -------------------------------------------------------------------------- 198
Sbjct 3624 CATCTGAAACAGGCCAGGTGAGCATCATGCATAAGGCCTCCATTCTGTCCGCTCAGATTCTGGGTGGGGCCACA 3697
Query 199 -------------------------------------------------------------------------- 198
Sbjct 3698 GGCAAATCTCCTGACTTATGGGGAGTTGGCTTGTGGTTCCTCCCTTGGATAGCCTCCATGGAACCACTATAGGC 3771
Query 199 -------------------------------------------------------------------------- 198
Sbjct 3772 TTTCCCAACAGCTGCCTCTGAAATAGCTGCTGCTTCGAGATCCTCCCTTTTTAAAGCACTTTCTAAAGCCCTCA 3845
Query 199 -------------------------------------------------------------------------- 198
Sbjct 3846 GGATGGCGGGAGCAAACAGCACTGGTATATTCTAGGAGTAAGTGCAGGAATTCAGCAGTGAGAGCATGTCTGGG 3919
Query 199 -------------------------------------------------------------------------- 198
Sbjct 3920 ACCACCTGGACTGCCATCCATTTAACCTCAAATCTCTTTGGGATACTCGCCCTCCCTGGGAACCAGAGTTCTGG 3993
Query 199 -------------------------------------------------------------------------- 198
Sbjct 3994 CTCTAACATTGAGCAGCTATGCACTAGTTCCAGAGAAGCCACTAACAGGCTGCCATGTGTAGATGTAGGTTCTT 4067
Query 199 -------------------------------------------------------------------------- 198
Sbjct 4068 AAGAGATCACAGGCTGGGTCATCTGATCACTGGATGGATAGCTCAGCCTGGGGCATTTAGTGTTTTCCCTGGTG 4141
Query 199 -------------------------------------------------------------------------- 198
Sbjct 4142 ATAAATCCCCAAGGCAGCTGGATTTGGAGCTGGTGGCAAGTTGAAATTATTAAAAATTGATTTGTGTGGGACTG 4215
Query 199 -- 198
Sbjct 4216 TC 4217
