Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_11616
- Subject:
- XR_001748385.1
- Aligned Length:
- 7046
- Identities:
- 171
- Gaps:
- 6851
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 AGCCCAGATCTGGGCATGCTTGGTGGGCCAGGGAGGAGCTGAGATGGGTGGAAGGTGTGGAGGTGAGCTCTTAC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 CTGGGGAATACAGAGTTCGTGGAAGGGTCTCCTGGCTCCTGGCTGGTGAAGCTGAATTGAATAATGACGCTGAA 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 CCTATAACTTTCCTCTTGATTGTTTTCTCTCATCGTAGCGTGTGCCCTGTGTTGTTGACTACCCTTGTGTTGTG 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 CTGATATTCCATCACAGAGGTGAGTGCCCAGAGAACGGTAAGGAGGGAAGCCCAGAGGAAAGGCTTTGCGGGGA 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 GAATCCCCACTGCTTTCTTATGGGAAATCAAATGAATGAGATAGGGGTGAGCAGGTAATATCTAAATTGTACAG 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 AGTCCCCCTTCTTCCTTCTTTTCTTCCTTTCTTTCTTCCCTGGTATGGTTTGAATGCATCCCCCCAAAGTCATG 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 TGTTAGATAGTCCCCAAGGCAAGTGTTGTGAAGTGGGACCTAATGGGAGGTGTTTAGGTCATGAGGGCTCTCCC 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 CTCATGAATGGATTAATGCTGCCATATAAAGGGTTTCTGGGAGTGGGCTCTCTCTCATCCTGCCTTCCATCATG 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 TGAGGACACAACGTGCAAGGCACCATCGTGGAAGAACAGAATGTCTTCATCTGACATCGAACCTGCTGATGCCT 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 TGACCTCAGACTTCTCAGCCTTCAGAACTGTGAGACAATAAATTTCTGTTTACAAATTACTCAGCCTGTGGTAT 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 TCTGTTATAGCAACACAAAAAGAAGCCACCCCCCATTCCTCACTCCCTCCAACCTTTACTGAGCAATAGCTGCC 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 TAACTGTTTTGTGCTAAGGGATGGAGATACAAAGATGACTGGAACACAGTTTCTGCTCCCTAGGAGTTCTCAGT 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 CAAGACACACAAGTAAGTAACACAGCTCTTTGATCTTAGAATGTACTCTCAATATACTAACAGATTTTCAGAAG 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 AAAAAAAGTTAGAAACACTACCACACTCAGTGTCCACATTAGCAAAACATTCTGGTTTCAGAAACACTCAAGTG 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 TGAAAAAAAAGTGTTTTAAAATTGAGCAGTATGAACAGAGTAATCATTTTCACAATAGGAGTGGTCCCATTGAC 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 CTATCAAAACATGAAAATGTGGGGGAAAATGTGTCTTGGAATTGGTAGTTACAGCGGTGTGATCATTGTCACAA 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 TGGGTGGGAACAAAACGCCATTGGAACCCACTGGAGGAACCCCTTAATGCTGTGTGGGAACACCAGACAAGGCT 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 CCTGGCAGGAGATAGTGTTGGAATGCTGCCTTCTAGGCTAACAGTGGTGGACAAGAGGATGGTAAAGAGTCCAG 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 AGGAAGCGGGGTTCCAGGCAGAGGGAGCAGCTTCTGAGAGAGACCCAATTTATCTTCAGGCTGGAAAAAGAAAA 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 GGAAGGCCTGATGAAAACCGTGTATTTGGCTTTGTTTACATTAATGAAGTGATTGGACAGAAAAAGTCACAATG 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 ACTTTTTTCTTTTGTGAAAAAAATTATTGGGAATGGAATTTTGAAGTCAGGGAGACTGAAAGAGGACTCACCTA 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 TGTCTATCTGGAAGATGTATCCAAAACACCCAGGAGTTTTGTGCGCATGTGTATGAAGGAAGTTCAGCTAGGAA 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 AAGCTTGCAGCCTGGGCAATACAGCAAGACCCCAATTCTAAAAAATTTTTTTTTTAATTAGCTGGGTGTGATGG 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 TGTGGCACCTGTGGTCCTAGCTACTCAGGAGGCTGAGGTAGGAGGATCACTTGAGACTGGGAGGTCAAGGCCGC 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 AGGGAGAAATAATAGCATCACTGTACTCTACCTCGACCCTGCCTCGAAAAAAAAATAAGAAAAGAAAAAGGAAA 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 AGGAAAAGAAAAAAGTTCAGATACTTCAAAATGTGGATTTGCCATAAAAACCTTTTCTTGAAGCATTCTTGAAA 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 TTTCTTACCAGATGTCAAACAGAAAAAGCCTCACATTACTGGAGAAACTTTATCTAAAGCCACATACACTGGGA 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 ATATGGAGATTTGTGAATAGAAAGAGGTAAAAGCTGGAAGTGATTCCTTAGTCAGATGAGGTGCTTCCATGAAG 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 AAGAGTAGGCATGTCTTGAAGCAAGTTATGGAGGAATTGGCCACCTCGCCATTCCTCCCACGTCACTCTGTGAA 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 ACTCCAGGTATCCTTCCAGGTAGTCACCTGCCTGTTTTGTTCATGATGTGCCTGCTGACTTCAACAAAGAAAGA 2220
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2221 TTTTTTTTTGTGAGTGCCTTTGGAAACTACAAAGCTGCTGATGTTTTGCAGATGGTATAAAGGTTTTTTGTTTT 2294
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2295 GTTTTGCTTGTGTCAAACAAAAGTGACTCGACAGAAAAGGTTCATTTCCTTGCACAGACAGTGCTGTTGCAATG 2368
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2369 CGTGGCTATGCATCTGACTTTGCTACTTGAGTAAAAGGGAGCACCTATGTTGTTCTCACTCACCGCATTTCACA 2442
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2443 CAAACGTATTCTGGCTCTTCAAAAACCCCAAGAGAAGTTTTGTCAACAGCCATAAAAGTCATCAACTTTTATCT 2516
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2517 AGTCTCTGAATCACAGCATTTTTGCAGGTTTTGTCAAGAAATGATGGCAGAAAATGAAGTGCTTCTCTACCACA 2590
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2591 GAGAAGCTTACTGTCTTTCAAGGGGAAAGATTCACTGTTTTCTAAAAGAAAAAGAAAATCCTCTCCTGGAACAT 2664
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2665 GTAGCAAGAAAAAATGTTGTCTGAGGGTTGGCTGACCCAGCGGATATTTTTAACCATCTGAACGAGATGAACCT 2738
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2739 TCCAGTTCGAGGCCCTGATACCACCATTATGAATGATCCTGAAAACTTTACCAGCTTTTTTGGCTCAGCTGCCA 2812
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2813 ATATGAAAGGAGAGTTCAGGCTGACATCTTTGCCAACTTTTGCGATGCTGGAGGAAGTGCTTTATCTCAATGAA 2886
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2887 GTTGACATACAAAATACTGTCAGTTTATCTGAAAAGAGAAATCTACAAACACCTGGAAACACTGTAGAACTCCT 2960
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2961 TTAAAAATTATTTCTATCTTGATGGTATCAAAGTTGGACCATAGAATTGCATTCTTTTTCTTGTTGATATAAAC 3034
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3035 TGTCTCAAAGGTGTTTGCCTAGCCAAAGATGGCGAACATTGATCTTGGGATGGAAAACAGCTACAACTAGAGTT 3108
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3109 TAGCTAAAAAGTCTTGGAGAGTTTTGGTGCTCCTTGACAGAAACATCTGTCTACTTTGCAAAGGAGCCGTAAAA 3182
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3183 GCTTTAATTCCATTTTCAACAATATATCTTTGAGGATTGGAGTTTTAATGTTGTTACTAGAAAAAATCAAAATC 3256
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3257 AATTGGATGTCCAGCATGACAAGTGTATTATCTCATCAAAGACATCCCGCTGTCTCATATTCTTATTCAAACTA 3330
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3331 GGCAAAGCAGCCTTTATATGGGTATGTCTTTTAAAAAACAAAATTTAACTTCAATTTGCCTGTATTTCAAGTGC 3404
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3405 AATGTCTTATTTTTTTAAATGTGGTTCAAAGAAGCAAATCTGTTACTATGTAATATATATTTTAAACATACTAT 3478
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3479 TTTGGTAATTGTACTTCAGTATACACGCTTGGTTTTCCTTGTAATCCTACGCCTTTATTTTATGCATCAAAAAA 3552
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3553 CATTATTTTAAGAAAGGTCTGTAGGCTTCACCAGATTGCCCAAGGAATCCACTATGTAAAAACAGTAAAGAACT 3626
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3627 GATGGCCCCGCACAGTTGCTCAGGCCCGTAATCCCAGCACTTTGGGAGGCCAAGGCGGGTGGATCACTTGAGGT 3700
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3701 CAGGAGTTTCAGACTAGCCTGGCCAACATGGTGAAACCCCATCTCTACTAAAAATACAAAAATTAGCCAGGCAT 3774
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3775 GGTGGCATGTGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCATGAAAATTGCTGAACCCAGGAGGTGGAGGT 3848
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3849 TGCAGTGAACCGAAATTGTGCCACTGCACTCCAGCATGGGCAACAGAGCGAGACTCTGTCTCACACACACAAAA 3922
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3923 AAAGATCTCCTGATATAAGAGGACATGATCATCTGCCATGCTCTCAAGTTGCTTAACGTTCAAAAAGGCAGGTG 3996
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3997 TGTTGTGTATGATATGGTGCTTGAAGAAAGAGAAGCTCCCTTGACAAAAGGCCAGGCCAGCCGTTTGGCTCCTG 4070
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4071 TGCTGTCAGAAAACCCAGTGGAGGTGGCAGTCTTTAATGTTCAACCTCATCATTCCCAAGACAATGGAAGAAGA 4144
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4145 GGGCAGATACCAACCCAACATAGGAAGGCACCTCTTCTCTTTTCTTTCTATAGTAACTGATTCCAGAAAACTGG 4218
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4219 CCATTTCAATCAAGCCCCCGTTGCTGAAGTGAAATCTGTTACTGAGTTCTTCCTGTATTCAGGGAGTGATATAG 4292
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4293 GGTTACAGAGAAGGGAAACACAAAGTCTCTTCCCTTGAGGAGTAAACAATTTAGTGTTGGAGACAAAATTAATA 4366
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4367 CATAAAACAATTAAGGGGAATTAAATGCAAGGCTAGAGGGTGTTTTAAGAAAATTCTGCCTGTTGACTTTTTCA 4440
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4441 ACACAGTATCCTCAGGGTCTAGAATATTGCTTGGCACACAGTATATGCCAGAAAAAAAATCTTTGTTGAATAAA 4514
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4515 TAAGTTGATGATGGAAATGTTAAAATAACATCTATTGTTATGAGAATAAGACAGTTGTCCCTCAGTAACCATGG 4588
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4589 GGAATTGATTCCAGGACCTCCCTTGGGTACCAAAGTCCAAGGATGCTCAAGTACCTAATATAAAATGGTGTAGT 4662
Query 1 -----------------------------------------------------------------ATGGAGTCT 9
|||||||||
Sbjct 4663 ATTTATTTGCATATAACCTAAGCACATTTTCCCATATACTTTATTTATTTATTTATTTATTTGAGATGGAGTCT 4736
Query 10 CACTCTGTCACCCAGGCTGGAGTGCAGTGGCGTGATCTTGGCTCACTGCAACCTCTGCCTCCTGGGTTCAAGCA 83
|.|||||||.|.|||||||||.||||||||||||||||.||||||||||.|||||.|||||||||.|||||||.
Sbjct 4737 CGCTCTGTCGCACAGGCTGGATTGCAGTGGCGTGATCTCGGCTCACTGCCACCTCCGCCTCCTGGATTCAAGCG 4810
Query 84 ATTCTCCCACCTCAGCCTCCCAAGTAGCTGGGATTACAGACGTGTGCCACCATACCTGGGTAATTTT-TGCATT 156
|||||||..|||||||||||||.||||||||||||||||.|.||||||||||.|.|..|.||||||| | ||
Sbjct 4811 ATTCTCCTGCCTCAGCCTCCCATGTAGCTGGGATTACAGGCTTGTGCCACCACATCCAGCTAATTTTGT---TT 4881
Query 157 TTTAGTGGAGAGGGAGTTTCACCATGTTGGCCAGGTTGGTCT-------------------------------- 198
||||||.||||.||.|.||||||||||||||||||.||||||
Sbjct 4882 TTTAGTAGAGATGGGGGTTCACCATGTTGGCCAGGCTGGTCTTGAACTCCTGATCGTAAGTGATCCTCCAGCCT 4955
Query 199 -------------------------------------------------------------------------- 198
Sbjct 4956 CGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACTGCCCCTGGCCTTCCCATATACTTTAAATCATCTCT 5029
Query 199 -------------------------------------------------------------------------- 198
Sbjct 5030 GGATGCTTACAATACCTAATACACTGTAAATGTTATGTAAATGTTTATAATTTATATTATTTTTTATTTTTTTC 5103
Query 199 -------------------------------------------------------------------------- 198
Sbjct 5104 CAAATATTTTGATCCTCTGTTGAATTCACAGATGCAGAACCTGCAGATATGAAGGGTCAGCTATACATGTTATT 5177
Query 199 -------------------------------------------------------------------------- 198
Sbjct 5178 AGAGAAAATGTAAAAATACAGAAGACTATAAAGAAGAAGTAAAAAAGAAAGGCTAACCAGCCAACATTTTTGCT 5251
Query 199 -------------------------------------------------------------------------- 198
Sbjct 5252 ATATTGCTATATTTCTTCTTAGTTCTTTTTTCTAAATACATGCATAACACACACACACACACACACACACACAC 5325
Query 199 -------------------------------------------------------------------------- 198
Sbjct 5326 ACACACTCACTCATACTTTCTTTTAAGAACAGAATTGAGACTTGAGTTTTATAGCCCGATTTTTTTCTCTTAAA 5399
Query 199 -------------------------------------------------------------------------- 198
Sbjct 5400 ATTATATTGTGAACATTTTGCTGTGCCATTAAGTATTCTTCAGAACATTATTTTTAATGGCTGTATCATATAGT 5473
Query 199 -------------------------------------------------------------------------- 198
Sbjct 5474 ATTCTACAAATAAATCATGGTGTATGTAGCCTAATTTATTAACCACTTCCCTATTGTTGAACATTACTGTTGGG 5547
Query 199 -------------------------------------------------------------------------- 198
Sbjct 5548 AACACCAACAACAGCTTTTATTTGTTGCTTTGCTCTGTTCCAAGTATTGTGCTGAGCTTTTTCCCTTGATGCAT 5621
Query 199 -------------------------------------------------------------------------- 198
Sbjct 5622 AATCTCATTTAATTTTGTTCTCATAGCAATCTAATGAGGTAGAATTCATTAGACCCATTTTACAGGGGAGAAAC 5695
Query 199 -------------------------------------------------------------------------- 198
Sbjct 5696 ATGAAGGTCAGAGGAGTAATGTGTCAAAGGCTGCAATTCCAGAAAGAGGCAAATCTGGGATTCAAGTCCTGGTC 5769
Query 199 -------------------------------------------------------------------------- 198
Sbjct 5770 CCATTTGATGTTAATGTCCAGGCACTCAAACATGACCCTGGCCTGCCTCACCAGCGTGTATGAGGAAGGTTCAT 5843
Query 199 -------------------------------------------------------------------------- 198
Sbjct 5844 GCTTTATCAGGCCATGAAAGAGATTGAGAAACACATATCAGAAAGGCAGGAGGAGACACGGAAGAGAGGAGTAT 5917
Query 199 -------------------------------------------------------------------------- 198
Sbjct 5918 GGAGGCAACAAAGGAGAGATCTTAAGTAGGAGGAAGTGCTTTTCTGTATTCAAAGCTGCGAAGATAGAAGGACA 5991
Query 199 -------------------------------------------------------------------------- 198
Sbjct 5992 AGACCAATGCAAAAACTGATTAATCTTTTTCAAGACAGGCATTTCAGAAGCATAATGGGGGGTGAAATGCGTGT 6065
Query 199 -------------------------------------------------------------------------- 198
Sbjct 6066 TCCTAGCTCAGTGCTCCTGACTTGGTGGTAGTGGAGTGACAAAACCATTCATTTATTTATTCCCAATACTGGGA 6139
Query 199 -------------------------------------------------------------------------- 198
Sbjct 6140 GTCATGGAACAGCCTTCATAAGGTGGCATCCAAGCAGCACAATGTCCCTCCTGTTCCTGAGCATTTCCGCATCC 6213
Query 199 -------------------------------------------------------------------------- 198
Sbjct 6214 CTGCATCAGTGAGCAGTATCACTAGCAGGAGCTCAGAGGCTTGTAATGGAAGGCAGGGACATCACCCTATAGGG 6287
Query 199 -------------------------------------------------------------------------- 198
Sbjct 6288 ACAGCAGAACTGCAGGGTGACCATAGGGGCTGGCCGGGGACCAGGCATAGGTGACCAGCTTTCCGGGTGTGCCT 6361
Query 199 -------------------------------------------------------------------------- 198
Sbjct 6362 TGGACTGAGGGGTTTTCCTGGAGGCAGAACTTCCAGTGTTAAAAACAGGAAAGTCCCAGGTAAACTGGGATGGT 6435
Query 199 -------------------------------------------------------------------------- 198
Sbjct 6436 TGGTCACCCTAGGCTGAGGCCCAGCTCAGAGTCTGGGCTTATCCAGGGGCAGGTCCGTGCAGGCTTCCTGAAAG 6509
Query 199 -------------------------------------------------------------------------- 198
Sbjct 6510 AGTAGCGAGGGATCCGGCGCTGTTTGCGCATGCTCACCTCCCACTTTCGGCCCTTGCAGGCTGCCTTTCCCTTG 6583
Query 199 -------------------------------------------------------------------------- 198
Sbjct 6584 GCCTCCTCACTGAAACTTCCTCCACAAGGGTCACCGATGAACCTTACATACTGCCAGATTCCACAGCCACTTTT 6657
Query 199 -------------------------------------------------------------------------- 198
Sbjct 6658 GGTCCAAGTCACTGTCATCCCTCACCTGGGCTACTGCAGTAGTCTCCTAATGGTCCCCTGCTTCTATCCTTTGC 6731
Query 199 -------------------------------------------------------------------------- 198
Sbjct 6732 CCTACAATCTATTTCCAACCCGACAGCCAAAGTGACCTTTTCCTTAAAAATTGAACTTTTTTTCATTAAGAAAT 6805
Query 199 -------------------------------------------------------------------------- 198
Sbjct 6806 AATGTATACATAGTAAAACTCAAGTGTATTAATACGCAATTCTGCATGCTTTGGCAAACACATGCAGTGGTTTA 6879
Query 199 -------------------------------------------------------------------------- 198
Sbjct 6880 ACCTCCACCGTAGTCAAGATGTAAAAATGTTTTTTTTTTTTCACTCCAACTAATTCCTCTGTACCAACCTATTT 6953
Query 199 -------------------------------------------------------------------------- 198
Sbjct 6954 CCTTACCCCCAGTCCCTGTTAACCACTGATTTCTGTTTCTAAACTTTTTGCCTTTTTGGAATGGCATGTAAATA 7027
Query 199 ---------------- 198
Sbjct 7028 AATCATATTGTATGTA 7043
