Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_11616
- Subject:
- XR_001748733.2
- Aligned Length:
- 7107
- Identities:
- 171
- Gaps:
- 6911
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GGACAGAGCCCGCTCCTCCAGGCTGGTGGGGCGGTGCGATGAGGCGGCTTCTGGGCCATACGTCAGCACGTGGG 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GTGGCGCCGCACCCCTGAGGATCCCGGTCCACGCGGAGGAGTGGGGCTTTTCACCGCCGCCGCCGCCGCCCTCG 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 GACCTCTCCCGGGATACTTCACATTTCCCTAGGGACGGGAGCCCGAGGGGTCCGTTCGGCCCTCTTCCTCTCGC 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 TGGGCCGACACCCCGCTGTAGGACCGTAACCCTTAGTCCCAATGCCTCCGTAAGCGGAGTTGAGTGGGTGCCTG 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 TGGTTGGAGCTGTGGAGGTGTCCCCGGTGGCGAGCGCGGCCAGAACTGCGGTCACTTAAGTTTTCCGTGTGCGG 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 GTTGCAAGGAGCGTGCGTGCGTCTGGTATAGGGAGGACACCTCTGGATTGAGGATCTTATGACCTACTTTAGAG 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 GAAGGTATAATTTGGCTTCCTGAGATTCTGCCTTAGCAAGAAAGGAGTGGGAAATACCCTTGGAAAGAAAACTA 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 AAACAGTAAGAAAGCCAAAACTTATTTTTACATGGTTGTCAGCACATTTACCGATATGGACACTTTTCCCAATA 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 ATTTTCCTCCTGGTGGAGACAGTGGATTGACAGGTTCTCAGTCGGAGTTCCAGAAAATGTTAATTGATGAAAGG 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 TTACGATGTGAGCATCATAAAGCTAATTATCAGACACTGAAGGCTGAACACACAAGGTTGCAGAATGAACATGT 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 AAAGTTACAAAATGAACTCAAGCACCTGTTTAATGAAAAGCAAACTCAGCAGGAAAAACTTCAGCTCCTGCTTG 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 AAGAACTAAGAGGAGAATTAGTAGAGAAAACTAAAGATTTAGAAGAAATGAAACTGCAGATATTAACTCCACAA 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 AAATTGGAATTGCTAAGAGCCCAAATACAACAAGAATTAGAAACTCCAATGAGAGAACGTTTTAGGAATCTAGA 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 TGAAGAGGTAGAAAAGTATAGAGCTGTATATAATAAGCTTCGCTATGAACATACATTTCTCAAGTCAGAATTTG 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 AACACCAGAAGGAAGAGTATGCACGTATTTTAGATGAAGGAAAAATAAAATATGAATCAGAGATTGCAAGACTG 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 GAGGAAGATAAAGAAGAACTACGTAACCAGCTGCTTAATGTTGATCTCACAAAAGACAGCAAACGAGTGGAACA 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 ACTTGCTCGAGAAAAAGTCTATTTGTGTCAAAAATTAAAAGGTTTAGAGGCTGAAGTAGCGGAATTAAAGGCTG 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 AAAAGGAGAATTCTGAGGCTCAGGTGGAAAATGCCCAAAGAATACAGGTGCGGCAGTTGGCTGAGATGCAGGCT 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 ACAGTCAGATCCCTGGAGGCTGAAAAACAATCAGCTAATTTACGGGCAGAACGTTTGGAAAAAGAGCTACAATC 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 AAGCAGTGAACAAAATACCTTTTTAATTAATAAATTGCATAAAGCTGAACGAGAAATAAATACATTGTCCAGTA 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 AAGTAAAAGAACTTAAACATTCAAACAAACTGGAAATAACAGACATCAAACTGGAGACAGCAAGAGCTAAGAGT 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 GAGCTAGAAAGAGAAAGGAATAAGATTCAAAGTGAACTGGATGGATTACAGTCAGACAATGAAATTCTCAAAGC 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 AGCTGTTGAACATCACAAAGTGCTCTTAGTAGAAAAGGATCGTGAATTAATACGTAAAGTACAAGCTGCCAAAG 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 AAGAAGGTTATCAAAAACTTGTGGTATTACAAGATGAAAAGTTAGAACTCGAGAACAGATTAGCAGATTTGGAG 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 AAAATGAAAGTGGAACATGATGTCTGGAGGCAATCTGAAAAGGATCAGTATGAAGAGAAATTGCGGGCTTCACA 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 GATGGCAGAAGAGATCACCAGGAAGGAGCTTCAGAGTGTTAGGTTAAAACTTCAGCAACAAATTGTGACTATTG 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 AAAATGCAGAGAAGGAAAAAAATGAAAATTCTGACCTAAAACAGCAAATCAGTAGTTTGCAGATCCAAGTGACT 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 TCACTTGCACAGTCAGAGAATGACTTGCTGAATTCAAACCAAATGCTGAAGGAAATGGTGGAGAGATTAAAACA 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 AGAATGCCGAAATTTTAGAAGCCAAGCTGAAAAAGCGCAACTAGAAGCTGAAAAGACATTGGAAGAGAAACAGA 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 TACAGTGGTTGGAAGAAAAGCATAAGCTTCATGAGCGTATCACAGACAGAGAAGAAAAGTACAATCAAGCTAAG 2220
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2221 GAGAAACTGCAGCGAGCTGCAATTGCCCAGAAAAAGAGAAAATCTCTTCATGAAAACAAATTGAAAAGACTACA 2294
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2295 AGAGAAAGTAGAAGTCTTGGAGGCAAAGAAAGAAGAATTGGAAACAGAAAATCAGGTCTTAAATAGACAAAATG 2368
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2369 TTCCTTTTGAAGACTATACAAGGCTTCAAAAAAGACTAAAAGATATACAGAGAAGACATAATGAATTTCGAAGT 2442
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2443 CTAATTTTGGTTCCTAACATGCCTCCAACAGCATCTATCAATCCTGTTAGCTTTCAGTCATCAGCCATGGTTCC 2516
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2517 AAGCATGGAACTACCATTTCCTCCTCATATGCAGGAGGAACAACATCAAAGGGAACTCTCTCTACTTCGCAAAA 2590
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2591 GACTAGAAGAACTGGAAACAACACAAAGAAAACAACTAGAGGAACTTGGATCTTCCGGAGAATGATGTTCTTGG 2664
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2665 AGAACAGGCAGATCAAAAGAGGGCTCTGATGTTTCAAACCACTTCTTCCCTGATAAGCCTGGAAGTAAAGCCAC 2738
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2739 TGAAGACAAAATAATGCATTCTATGAGGGACGACTAAGCTCTTCAACAAAAATTCCAGAAGCAAATTTGTATAT 2812
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2813 GCTCACACTTGTGTGCCCATGTTCACAAAGAGAGGCATGATATGAACCATCTCTGTAGGCTCCTGTTCGGGGTG 2886
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2887 GAGGGGGAGGCATCAGTGTGCGAAGGTCCCAGCACCACAGTGGGCAGACTCTCTGGCCAAGGCTGCTAACCTAT 2960
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2961 GCCTAGGTGAGCATGTGGTGCACAAATGTGATTTTTCTTTTTTTGGAACCTGCATGGTGTTTAATTATTATTTT 3034
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3035 AGTGTCAACTCAGTGCCAACATTTAAAGATTAAAAGATTGCACATAGGCTGGACATAGGAGCTCAGACCTATAA 3108
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3109 TCCCAATACTTTGGGAGGCGGAGGCAGGGGGATTACTTGAGGCTAGGAGTTCAAGACCAGCCTGGGCAACATAG 3182
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3183 TGAGACTTGTCTCTATAAAATTTTTTTTAAAAGTTTTTAAGTTGCATATAAAAAACTGGATATCTGATTTCTTT 3256
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3257 AAAAAAAGAAAATCGAACAGTCTAGTAATACAATCTGTAGTCCACATGGCAACCACTGAAGCAAATGGCACTGT 3330
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3331 CCCCTTGGATGGCGAGTCCTTTCCCATTAAGTCAAGCTCCACTGCTTTCTGTAGTCCCAGGCGGCTGACACCCC 3404
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3405 TTATGTATTTTCTGCCCCTTTGGGCATCTGCGTTTTTGAGTCTCTGCTGTAAGAGCTCCAAGCATAGCTGCTTC 3478
Query 1 -----------------------------------------ATGGA------GTCTCACTCTGTCACCCAGGCT 27
.|||| |||||.|||..|..||||||||
Sbjct 3479 TGGTGTTGGATTTCTTTTTTTTGGTTTTGTTTTTGTTTTTTTTGGAGACAGGGTCTCCCTCCATTGCCCAGGCT 3552
Query 28 GGAGTGCAGTGGCGTGATCTTGGCTCACTGCAACCTCTGCCTCCTGGGTTCAAGCAATTCTCCCACCTCAGCCT 101
|||||.||||||||..||||.|||||||||||||||||||||||.|||||||||||.||||.|..|||||||||
Sbjct 3553 GGAGTACAGTGGCGCAATCTGGGCTCACTGCAACCTCTGCCTCCCGGGTTCAAGCAGTTCTTCTGCCTCAGCCT 3626
Query 102 CCCAAGTAGCTGGGATTACAGACGTGTG--CCACCATACCTGGGTAATTTTTGCATTTTTAGTGGAGAGGGAGT 173
|||||||||||||||..|||| ||||| |||||||.|||||.|||||||||.||||.||||.||||..||||
Sbjct 3627 CCCAAGTAGCTGGGACCACAG--GTGTGCACCACCATGCCTGGCTAATTTTTGTATTTGTAGTAGAGACAGAGT 3698
Query 174 TTCACCATGTTGGCCAGGTTGGTCT------------------------------------------------- 198
||||||||||||||||||.||||||
Sbjct 3699 TTCACCATGTTGGCCAGGCTGGTCTCAAACTCCTGACTTCAGGTGATCCACCAGCCTTGGCCTCTCAAAGTGCT 3772
Query 199 -------------------------------------------------------------------------- 198
Sbjct 3773 GGGATTACAGGCGTGAGCCACCACGTCCAGCCTGGTGTTGGATTTCAGTACAGTTGATGGCTGGTTTCTGGAGG 3846
Query 199 -------------------------------------------------------------------------- 198
Sbjct 3847 TAGTCTGGGAAATCAGCAGGCACACAGAAGCCTGACATAGCTGATAGGCTGTGTCCCCAGGCCCCCTCCTTGCT 3920
Query 199 -------------------------------------------------------------------------- 198
Sbjct 3921 CTGCTCCTTGCCTTCCTACTTTAGGAGGCAAGGGACACCCAAACTCAGGAAAAGAGTAAGGATGCTACTACCTA 3994
Query 199 -------------------------------------------------------------------------- 198
Sbjct 3995 CTCATCAGCGGCAGGACCAAGACTGTCGGGCGGGGTATGCCCATGTCCTTTGTAGTGACAGCCACATATTTGCA 4068
Query 199 -------------------------------------------------------------------------- 198
Sbjct 4069 AGATGTATGCTCAGAGCAAGGAAGCTGGGGGTCTGGGGTCAGGGTCATGGTGTCCTGGCTGGGGCTCCCCCTTT 4142
Query 199 -------------------------------------------------------------------------- 198
Sbjct 4143 GATCCTGTATCTAACCAAATGAGCTAAAATGGTCCTCAAGTGACTCAACGGTCACCCAAGGAAGGAAGCAGAAG 4216
Query 199 -------------------------------------------------------------------------- 198
Sbjct 4217 AGGGGTGCCTTAGCAGCCCTGCTTTCTTTAAAGCCACATCACCAAGTTGCCCCACATTTGCATGGTCTCAAACT 4290
Query 199 -------------------------------------------------------------------------- 198
Sbjct 4291 TCCAAGACCCTGCCTCAAGGCTTTATCAATGGCCTTTTAGCAGGGGGCTGGACTGGGAGGGCCGAGTGGGAGGA 4364
Query 199 -------------------------------------------------------------------------- 198
Sbjct 4365 TTTTAATTGCCTGCTTAGTCAAGGCCTATAACTGTACATCAAGGGGAAGTGAACCTCGTTACACTGTCTGTCAC 4438
Query 199 -------------------------------------------------------------------------- 198
Sbjct 4439 CACCATGATTCTATTCTTCATTTCTGTCCCATTATCTGCTATAAAATCCCACGACAGTCTCCTGGGAGGACTGC 4512
Query 199 -------------------------------------------------------------------------- 198
Sbjct 4513 ACGGAGCTCAACTTTAAAATGTTGATGAACATTTGAGGGAAGTGGGGCCCTGTTAGCTTGCTCACGCATATGCT 4586
Query 199 -------------------------------------------------------------------------- 198
Sbjct 4587 CTCCTTTGCAGTATACCAGTAGAGCCCGAAAATGAATTCATAGCAGATGCTGCTGCACACTGAGGGAGGACGGA 4660
Query 199 -------------------------------------------------------------------------- 198
Sbjct 4661 GCATATACTTAATACAGGATGTGATTAGCAGAGGAAGATGACCTTTCTAGCAGGCTAGAGTTAACACCCAGAGT 4734
Query 199 -------------------------------------------------------------------------- 198
Sbjct 4735 CTGAGCCACCCAGTAATGACACGCTCAGTATCACAACAAACAAATCAAATGCCAATGTGAAATGCAACACACGC 4808
Query 199 -------------------------------------------------------------------------- 198
Sbjct 4809 AGAGGGCACTGTGTTGACACCTTTCTGTATTTCATGATGCAAGGTGATTCCGTGCAGTCTCAGGGCCTGCAATC 4882
Query 199 -------------------------------------------------------------------------- 198
Sbjct 4883 TCATCAATCTGATTTACAGACGTAATATTTAAAGACAACAACAACAAACGCCATCTTTGAAGGACCGTGCTTCC 4956
Query 199 -------------------------------------------------------------------------- 198
Sbjct 4957 TTCGAAGAATCAGGATGCCCATGAGAGACCAAAGCAGTCTCTTGGCCCCTAGACATGCCCTCCAGGAACAACCT 5030
Query 199 -------------------------------------------------------------------------- 198
Sbjct 5031 GGCTGTGAGCGGAGAGTCTAACAGGCAAGAAGGAAGGGAGAAGACAGAAGGAAGATGCTCGCCCATACAGAGAC 5104
Query 199 -------------------------------------------------------------------------- 198
Sbjct 5105 AGAGGGAGGGGGGGCTCCAAAGCCGAAAGAGGAGGTCCCCAAGTACTGTGGACACTAGCCAGGTATATATGCAG 5178
Query 199 -------------------------------------------------------------------------- 198
Sbjct 5179 AGGCTGCAGGAGGCAATGTCTGATTTGCCTAGGGCTCAGGGGAGAGATGAAAACACAAATCATATGGAAGATGG 5252
Query 199 -------------------------------------------------------------------------- 198
Sbjct 5253 GAACCCTCAGGCCTACCTCAACTTAAAAATGGGTGTAATAACAGTACCGGCCTTCTAGCATTGTTAGGGAGATT 5326
Query 199 -------------------------------------------------------------------------- 198
Sbjct 5327 AAATGTGATCATGCATTCAAGGGCTTAGCACGGGGCCAGGCTGCTGGGAAAGGCTTGATGATAGTATCGGCAAT 5400
Query 199 -------------------------------------------------------------------------- 198
Sbjct 5401 AAAACCTGTACAATTACTATTGTTGGCATTAGTATCCACTCATTTGCAAACAGATTCAGCCCACATTGGACAGC 5474
Query 199 -------------------------------------------------------------------------- 198
Sbjct 5475 TAGGACGCCCACTCCATGCTCAGTATCTCTGAATAAGGAGGAGGCTGCCAGCAATGAACCCAGTGGAAGCCAGT 5548
Query 199 -------------------------------------------------------------------------- 198
Sbjct 5549 AGACTCCTGGCTTTCATCCCAGTCCACCGCAAGCCAGCTGGGTGACCTCTGAACCCATCCCTAACCAGCTGTGT 5622
Query 199 -------------------------------------------------------------------------- 198
Sbjct 5623 AACCTCTGTGTATGTCGCTTTCTCATCTGCAAAGAGGGCATAACAACAGTAACCGCACAGTTCTTAGAACAGCA 5696
Query 199 -------------------------------------------------------------------------- 198
Sbjct 5697 TCTGGCATGTGAGCCCGTGACTTATGGACCACTGACGTGGATGTGGGGCTTCTGAAATTTCGGGAGGTTCTCAG 5770
Query 199 -------------------------------------------------------------------------- 198
Sbjct 5771 GGGTGTTTCTTGTCTTTAATGCTGCTATGATCTGAATATTGATGTCCCCCTAACTCCAGGTATTGAAATCCTAA 5844
Query 199 -------------------------------------------------------------------------- 198
Sbjct 5845 CCCCCAAGGTGATGGTACTTGGAGGTGGGGCCTTTGGAGGGGATTAGATCATGAGGGCAGAGTCCTCATAAATG 5918
Query 199 -------------------------------------------------------------------------- 198
Sbjct 5919 GGATTAGTGCCCTTATAAAAGAGGCCTCAGAGAGCTGCCCTGCCCTTTCCACCATGTGAGGACCCAGCAGGAAG 5992
Query 199 -------------------------------------------------------------------------- 198
Sbjct 5993 GCGCCATCATGAGAAAGGGGGCTCTCACAGGACACCAACTCTTGATCTTGGACTTCTCATCCTCCAGAACTGTG 6066
Query 199 -------------------------------------------------------------------------- 198
Sbjct 6067 AGAAATAAGTTTCTATTATTTATAAGCCACCCAGTTTATGGTGTTTATAAAGAGCTGAGACAAACACCACTAAA 6140
Query 199 -------------------------------------------------------------------------- 198
Sbjct 6141 TCTTGCCCTTATAATCCTGTTGATAATTACGCAAGAGTAAATTTTGTTCTGGTCTCAACCAAATGATTAAAACT 6214
Query 199 -------------------------------------------------------------------------- 198
Sbjct 6215 CCGAATCAGTGGAATCTGAACTCTGAGGTAAGCCGGTGATCTCCGTCTGGCCTGTACGAGTTTCCCTCCTACAA 6288
Query 199 -------------------------------------------------------------------------- 198
Sbjct 6289 CAGAGTCACTCCCTTGCCTGCTCTCAGAGAACCTTTATGTTCTGGGCCAGCCACCGACTAGGAAGGGGTTCAAA 6362
Query 199 -------------------------------------------------------------------------- 198
Sbjct 6363 GGCCTGTCTGCTCACAAACAAGAAACAAAAAATACCAGACAGGAGAGAAGGCAGGGAGCTGGTGGGCAGAGTGC 6436
Query 199 -------------------------------------------------------------------------- 198
Sbjct 6437 CTAGAAGGAACCAACATGTGAAGCCTCACACCCGAGCCCTCTCCTCACCTCCCTTTTCTAGAAATGTTTCCTGG 6510
Query 199 -------------------------------------------------------------------------- 198
Sbjct 6511 ATTATTATTCCCATCCCTGTTGTAGAGTGAGGGAACTGAGGCACAGAGGGGCTGAGTAACTTGCTCCAGGAACA 6584
Query 199 -------------------------------------------------------------------------- 198
Sbjct 6585 GCTCACCAGTGGCAGAACCAGGAATTGAAGCCAGATTTGCCTAACTGCACAATTGGTGCCACAAACCCCTCGGC 6658
Query 199 -------------------------------------------------------------------------- 198
Sbjct 6659 TATGCCATCCCCGCTTTACCACCCGCCCTCCCTCCCTCCTTCTGGTTCCACCTATAGCCCAGGAGCCCTCCTGA 6732
Query 199 -------------------------------------------------------------------------- 198
Sbjct 6733 CCCTCCAGAAACCCTGGCTTAGCTCAGGCTGTAAGCAATGTCCTAAGCTAAATTCCCCACACCAGTGGGAGGGG 6806
Query 199 -------------------------------------------------------------------------- 198
Sbjct 6807 TGGGTGTGAAGGGGTCAATGCTGGTGCCACCACCTACGATCTTGTTGGGGTCTTGCCTTATTTCTCTGCAAGGT 6880
Query 199 -------------------------------------------------------------------------- 198
Sbjct 6881 GATCTTCTCATGGTGGCGGGTAATTGCAGTTAAGCTACTTCAGTTTCTAAAGGGAAAGATGAATGGGAGGCACC 6954
Query 199 -------------------------------------------------------------------------- 198
Sbjct 6955 TTTTAATCGGAGCTTCAGCAATCTCAGCTTGTTTAATAGTTTTATAAATATTTGTGAAACAGCATTCTATTACT 7028
Query 199 -------------------------------------------------------------------------- 198
Sbjct 7029 ACCTAAAGGCACTATTGTCTTTAACAAAAACACTTTTTTATGGGCAATAAATGTTCTTTTTAAAAACATAACCA 7102
Query 199 --- 198
Sbjct 7103 AAA 7105
