Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_11616
- Subject:
- XR_001748865.1
- Aligned Length:
- 5467
- Identities:
- 170
- Gaps:
- 5274
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GCACTCCCGGCCTTAGTCGGGTGCGCGCGTGCAGGGCTGTTTCCGGCTTAGACTCAGTGGACCGGAATCTGGCC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 AGCGGGTGTACCTGGCTGAGTCTCTGTGGCCGCGGAGGCGCGGAGCTAAGCGGCTCGGATTATCCTGGGCAGAC 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 CAGAGACTTGACCAGCTAAACACTTCCGTCGGTCCGGGGCGTGGACGGGGCCAGATCAGCCTCCTGCTCTCCCG 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 AGTCAGGGCCACGGAAAGGCACAAATCCATCCGTGCGACTCCTGGTACCCAGACCGGGAGGTTGTCTAGTCACG 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 CGCGGTCTGTGTTGGGCGAGAGCTGAGGAGCCGGCGTCCCTGCCAACGACTCGGCCCCGGGACGGTCAGGAGCC 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 TGGGGCCCTGGTCCCGCACCTGTCTTCGGGCGGACGCATCCCTCACGGTCTCTCCGCAGCCCGCGGGTCCTGCC 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 CCCGCAGGCAGCGCGCGAACGTGGGCGTGGGGATGGCCACCAGTTTCCGGACAGCTTCGTGCTGGCCTGTAACT 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 CACATGGGAGGTCTAAACTGGAAATACATAAAGACACCTTATTGTATTCGTGGAAGCTCAGAGTGTGACCAACT 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 GGAACCCTCAAGAGGACCGAGATTTAAAGTAACCAGCTTGATAAGCACCTCAACGTAATAAGGGCACAGTAGTG 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 GCTTCATTTTTCTCATCACAGCCTCAGGCTTCCTGTCAGCCCTTCCCTAGTGCTCGTCGTGAGGAGAGCTGATG 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 ATGCTCTGGTCACAGCCTTGTTTGTTATTGACTCTCAGTTACTTTCAGGTATGGGAAAGTTCAGTCCACACTCT 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 CACTCCAAGCTCTTGTACCTCCCCTCATTCTAGCCTGCAGAGGGGAGATGGAGGAGGCTTGTCTGTATTCCCAC 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 TTCATTTACTTGTTGCCCTCCGACGGGGGCTCCTTCTGGGTTGGGGTGGGAAAATCAGTGGTTAGAGAAAAAGA 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 CACAGAGTCTCCTGTTGTGCGGTGGTCAGTACCCAGAGTTATGACAGGCATCAGTGGGGCTTGGTTGGAGCCTC 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 TGACAGGGCTCTGCCCTGCAGTTCCATGGTGTATGTGATTCTTTCTCTCACTGCATGCAGACTCACCCAGAAGT 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 CCACTCACTGCCTCTTCCCCTGGGGTCTCCCTCCCTGCAGGTAGTGCTGCTGAGGAGGAGCCTGCTAATGAGCT 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 CAAGTGTCAAGTTCGGGAATCTTCTGGGTGTTCCTTGGGCCCAGGGAAACAGTGCCCTGCCTGAGGGATTATTG 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 TCATTCAAGGATATATCTATGGAGTTCACCTGGGATGAATGGCAGCTACTGGATTCTACACAGAAGTACCTGTA 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 CAGAGATGTGATATTGGAAAACTATCATAACCTGATATCAGTGGGGTATCATGGTACCAAGCCTGACTTAATCT 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 TCAAGTTGGAACAAGGAGAAGATCCATGGATAATAAATGCCAAAATTTCCAGGCAGAGCTGTCCAGATGGCTGG 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 GAAGAATGGTACCAGAACAATCAAGATGAGCTTGAGAGTATTGAAAGAAGCTATGCTTGTAGTGTGTTGGGAAG 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 ACTTAATCTGAGCAAAACCCATGATTCTTCAAGACAGAGACTCTATAACACACGTGGAAAAAGTTTGACACAAA 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 ACTCAGCTCCAAGCAGAAGTTATTTAAGAAAGAATCCTGATAAGTTTCATGGTTATGAAGAACCATATTTTCTT 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 AAGCATCAAAGAGCTCATAGCATAGAAAAAAACTGTGTGTGTAGTGAATGTGGGAAAGCTTTTCGTTGTAAGTC 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 ACAGCTCATTGTACATCTCAGAATTCATACAGGAGAGAGACCTTATGAATGCAGTAAATGTGAAAGAGCCTTCA 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 GTGCCAAGTCAAACCTTAATGCTCATCAGAGAGTTCATACAGGAGAAAAACCCTACTCATGTAGTGAGTGCGAG 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 AAGGTCTTCTCTTTCAGGTCACAGCTCATTGTCCATCAGGAAATTCACACAGGAGGGAAACCCTATGGCTGCAG 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 TGAATGTGGGAAAGCCTACAGTTGGAAATCACAGCTTCTTTTACACCAGAGAAGTCACACAGGAGTGAAACCGT 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 ATGAATGCAGCGAATGTGGGAAAGCCTTTAGTTTGAAGTCTCCATTCGTTGTACACCAGAGAACTCATACAGGA 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 GTGAAACCCCATAAATGCAGTGAATGTGGGAAAGCCTTTAGGAGTAAGTCCTATCTCCTTGTTCACATCCGAAT 2220
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2221 GCATACAGGAGAAAAACCCTATCAATGCAGTGATTGTGGGAAAGCCTTCAATATGAAGACACAACTCATTGTAC 2294
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2295 ATCAGGGAGTTCACACAGGAAATAATCCTTATCAATGCGGTGAATGTGGGAAAGCCTTTGGTAGGAAGGAACAG 2368
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2369 CTCACTGCACATCTGAGAGCTCATGCAGGAGAGAAGCCCTATGGATGCAGTGAATGTGGGAAGGCTTTCAGCAG 2442
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2443 CAAGTCATACCTTGTTATACATAGGAGAACACACACCGGAGAGAGACCCTATGAATGTAGTTTGTGTGAGAGAG 2516
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2517 CCTTTTGTGGAAAATCACAGCTGATTATACATCAGAGAACTCATTCAACTGAGAAGCCCTATGAATGCAATGAA 2590
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2591 TGTGAAAAAGCCTACCCTAGGAAGGCATCACTTCAGATACACCAGAAAACTCATTCGGGAGAGAAACCTTTTAA 2664
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2665 ATGCAGTGAATGTGGAAAAGCCTTCACTCAGAAGTCATCTCTCAGTGAACATCAGAGAGTTCACACCGGAGAGA 2738
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2739 AACCATGGAAATGCTCTGAATGTGGGAAATCCTTCTGTTGGAATTCAGGGCTTCGTATACATCGGAAGACTCAT 2812
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2813 AAATGAGAAATCAGAATGATGCAATGTGAGAAACTGATGTTCAGGAGACTTCGGATAATATAGACAGGATTTAC 2886
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2887 AAGCAGGAGGCCCTAAAATTACACTCATGTCAAAAATCAGAGAGGAGAGAGACCAACCATATTTGGGATGAGTG 2960
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2961 TAAAAGCTTTCAGAAATAAGTTACAAATCTTTGTAGATGAAAATAATGGAAGGAATGTGGAGCAATAAATGTAT 3034
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3035 CAAATGTTGTAGTATCATCATGAAGATTCAGAGAATTTACACTAGGAACACCTTATAAGTTGAATAAATTAAGG 3108
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3109 AAGCATTTTCCCATTGAAAGTGTGTTCCATGGAAAGTCACATTCCAGATTTGAAGCTGTGTTTTTGTAAAATAA 3182
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3183 AATCTTGGTATGAACAGTTGACTTCATGGTGGAGTATAAAGTTGTTTTTTTAAAAATATGTAAATAATGTTCAG 3256
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3257 GAAAAACGCAGGGAACAGAGTCTTAAAGTTAATGGATATTTAATGTGACTTTCCTGAGTTAACACTGAATAGTA 3330
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3331 TTTCTAAAATTTTTTGTACTTTATTTTTTAATGTAACTTGTTCTATCTATCTATATATATATTTGATAGTTTGT 3404
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3405 GGAATAATATCCCCCAGTATTTTCCATATTAAATGCTAATTATCTTTTGATTTCTTTTTCATAAGCAGATCTGG 3478
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3479 CATTTATTACAGGGCTGCCGCTTAAGAGAACTCATTATAATGAACGTTTATTATATTTTGCAGTTCCATGCCTG 3552
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3553 TTGTCCATTGATTGACATGAGCACCCCTGTTTTCTCTGGAGAAATACCTCCCCTCTCTGGGGTGCTTCCTGTGG 3626
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3627 TAGTGTCTTTCAGGTATCCGTTCCACTAGCTACAGGCATTCAGATTGGGAGAAATAGCACCTCAGGAACTGCAT 3700
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3701 CCTCAAGAGTCCCATCTGCACCTGTAGCAGAGTTTGACGATGAGATCCTGGTCTTCAATCTGATATTATAACGG 3774
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3775 GATGAGACATTGGGATCTTGGGGGAGGAGATGGCTGTACTTTGCATGGGGGGGATGTGAATTGTTACAGCCAGA 3848
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3849 GGGCAGACCGTGGTAATCCCAAACATGGCCAAAACAGTATCTCCTATCACACATTCTCTTCCACAGTGTGCCTG 3922
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3923 CTATATATTTCTCCCATGAGAGTTGAGGTCGACACCAGCTCCTTGAACCTGGGTGGACTTGTAATTTGCCTGTA 3996
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3997 GCCAACAGAATGCAGCAGAAATAGGCCAGGTGCAGTGGCTCATACCTGTAATCCCAGAGCTTCAGGAGGCCAAG 4070
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4071 GCAGGAAAATTGCTTGAGCCCAGGAGTTTGAGACCAGCCTGGGAAACACAGTGAGACCCCGTTTCTATTTAAGA 4144
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4145 AAGAAAAAAAAGAATGCAGCAGAGATGAAGCTGTGTAACTTCCAAAGCTAGGTCATAAAAGGTGATGCAGCTTC 4218
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4219 CATCTTGTCACTGGAATTCACACTCTTGAACCATTCAGCAGCCATATAAGCAGTCCAATGGCCCTGAGCTGCCC 4292
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4293 TGCAGTAAGAAAGCCCAAACTAGCTCACACACAGACTACATCAAGAGTGAGAGATGCCTAAAACACCCCCAGGC 4366
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4367 ATTCCAGCCCCTTCTGTTCTAGATCTAGCCTTAGAAAAAGCTGCCTAGCTGAGCCTATCTTGAATTTCTGACCC 4440
Query 1 --------------------------------------------ATGGAGTCTCACTCTGTCACCCAGGCTGGA 30
|||.|.|||||||||.| |||||||||||
Sbjct 4441 AGGAAACTATTAGATATAATAAGTCACTTTTTTTTTTTTTTGAGATGCACTCTCACTCTTT--CCCAGGCTGGA 4512
Query 31 GTGCAGTGGCGTGATCTTGGCTCACTGCAACCTCTGCCTCCTGGGTTCAAGCAATTCTCCCACCTCAGCCTCCC 104
||||||||||..||||.||||||||||||.||||..|||.|||||||||||||.|||| |..||||||||||||
Sbjct 4513 GTGCAGTGGCACGATCCTGGCTCACTGCAGCCTCCTCCTACTGGGTTCAAGCAGTTCT-CTGCCTCAGCCTCCC 4585
Query 105 AAGTAGCTGGGATTACAGACGTG--TGCCACCATACCTGGGTAATTTTTGCATTTTTAGTGGAGAGGGAGTTTC 176
|||||||||||||||||| ||| .||||||||||.|||.|||||||||.|||||||||.||||.||.|||||
Sbjct 4586 AAGTAGCTGGGATTACAG--GTGCTCGCCACCATACTTGGCTAATTTTTGTATTTTTAGTAGAGATGGGGTTTC 4657
Query 177 ACCATGTTGGCCAGGTTGGTCT---------------------------------------------------- 198
|||||.||||.||||.||||||
Sbjct 4658 ACCATCTTGGGCAGGCTGGTCTTGAACTCCTGACCTCATGATCCACCTGCCTCGGCCTCCCAAAGTGCTGGGAT 4731
Query 199 -------------------------------------------------------------------------- 198
Sbjct 4732 TACAGGCGTAAGCCACTGCGCCTGGCCAATAAGTCTCTTTTTTTAGGTAATCAAGTTAAAATAATAAGTCACTA 4805
Query 199 -------------------------------------------------------------------------- 198
Sbjct 4806 AATTTTGAGGTGTTCTGTTATGTAGAAGAGTGACTGGACCAACCCATAAAAAGGACAACTTCATATAGTTCAAC 4879
Query 199 -------------------------------------------------------------------------- 198
Sbjct 4880 TTTTTTTTTTTTTTTTTTTTTTTTTGATACAGAGTCTCGTTCTGTCACCCAGGCTGGAGTGCAGTGGCATAATT 4953
Query 199 -------------------------------------------------------------------------- 198
Sbjct 4954 TCAGCTCATGGCAACCTCCGCCTCCAAGGTTCAAGTGATTATCATGCCTCAGCCTCCCAAGTAGCTGAGATTAC 5027
Query 199 -------------------------------------------------------------------------- 198
Sbjct 5028 GGGCACCTGCCACCACGCCTGGATAATGTTTGTATTTTTAGTAGAGGTGGGGTTTCACCATGTTGACTAGGCTG 5101
Query 199 -------------------------------------------------------------------------- 198
Sbjct 5102 GTCTCGAACTCCTGACCTCAGGTGATCTGCCCGCCTTGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCAT 5175
Query 199 -------------------------------------------------------------------------- 198
Sbjct 5176 TGCATCTGGCCTAGTTCAACTTTATAAATAAATATGTCAAAGATAATTCAATATTAAAGTTTATATATTTATCA 5249
Query 199 -------------------------------------------------------------------------- 198
Sbjct 5250 TTTTAACCAAATAATGTAGAAATAGAGTGATATGAAACATAAATACCTATATAGGTTAAGAAAAATATTCAATA 5323
Query 199 -------------------------------------------------------------------------- 198
Sbjct 5324 AATTGGAACAATTCTTTGTTATAAAATTCTTAAGAAACTCAGAATAAAATGCAACACCTTTTTACGATTATAAA 5397
Query 199 ----------------------------------------------------------------- 198
Sbjct 5398 CCCCTCAGCAAACATACTTCAAGCAGAACCTTACGAACAGTATAATTAAAATGAGGAACCGCTGA 5462
