Nucleotide Global Alignment

Description

Query:
ccsbBroad304_11616
Subject:
XR_001748865.1
Aligned Length:
5467
Identities:
170
Gaps:
5274

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  GCACTCCCGGCCTTAGTCGGGTGCGCGCGTGCAGGGCTGTTTCCGGCTTAGACTCAGTGGACCGGAATCTGGCC  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  AGCGGGTGTACCTGGCTGAGTCTCTGTGGCCGCGGAGGCGCGGAGCTAAGCGGCTCGGATTATCCTGGGCAGAC  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  CAGAGACTTGACCAGCTAAACACTTCCGTCGGTCCGGGGCGTGGACGGGGCCAGATCAGCCTCCTGCTCTCCCG  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  AGTCAGGGCCACGGAAAGGCACAAATCCATCCGTGCGACTCCTGGTACCCAGACCGGGAGGTTGTCTAGTCACG  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  CGCGGTCTGTGTTGGGCGAGAGCTGAGGAGCCGGCGTCCCTGCCAACGACTCGGCCCCGGGACGGTCAGGAGCC  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  TGGGGCCCTGGTCCCGCACCTGTCTTCGGGCGGACGCATCCCTCACGGTCTCTCCGCAGCCCGCGGGTCCTGCC  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  CCCGCAGGCAGCGCGCGAACGTGGGCGTGGGGATGGCCACCAGTTTCCGGACAGCTTCGTGCTGGCCTGTAACT  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  CACATGGGAGGTCTAAACTGGAAATACATAAAGACACCTTATTGTATTCGTGGAAGCTCAGAGTGTGACCAACT  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  GGAACCCTCAAGAGGACCGAGATTTAAAGTAACCAGCTTGATAAGCACCTCAACGTAATAAGGGCACAGTAGTG  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  GCTTCATTTTTCTCATCACAGCCTCAGGCTTCCTGTCAGCCCTTCCCTAGTGCTCGTCGTGAGGAGAGCTGATG  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  ATGCTCTGGTCACAGCCTTGTTTGTTATTGACTCTCAGTTACTTTCAGGTATGGGAAAGTTCAGTCCACACTCT  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  CACTCCAAGCTCTTGTACCTCCCCTCATTCTAGCCTGCAGAGGGGAGATGGAGGAGGCTTGTCTGTATTCCCAC  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  TTCATTTACTTGTTGCCCTCCGACGGGGGCTCCTTCTGGGTTGGGGTGGGAAAATCAGTGGTTAGAGAAAAAGA  962

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  963  CACAGAGTCTCCTGTTGTGCGGTGGTCAGTACCCAGAGTTATGACAGGCATCAGTGGGGCTTGGTTGGAGCCTC  1036

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1037  TGACAGGGCTCTGCCCTGCAGTTCCATGGTGTATGTGATTCTTTCTCTCACTGCATGCAGACTCACCCAGAAGT  1110

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1111  CCACTCACTGCCTCTTCCCCTGGGGTCTCCCTCCCTGCAGGTAGTGCTGCTGAGGAGGAGCCTGCTAATGAGCT  1184

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1185  CAAGTGTCAAGTTCGGGAATCTTCTGGGTGTTCCTTGGGCCCAGGGAAACAGTGCCCTGCCTGAGGGATTATTG  1258

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1259  TCATTCAAGGATATATCTATGGAGTTCACCTGGGATGAATGGCAGCTACTGGATTCTACACAGAAGTACCTGTA  1332

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1333  CAGAGATGTGATATTGGAAAACTATCATAACCTGATATCAGTGGGGTATCATGGTACCAAGCCTGACTTAATCT  1406

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1407  TCAAGTTGGAACAAGGAGAAGATCCATGGATAATAAATGCCAAAATTTCCAGGCAGAGCTGTCCAGATGGCTGG  1480

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1481  GAAGAATGGTACCAGAACAATCAAGATGAGCTTGAGAGTATTGAAAGAAGCTATGCTTGTAGTGTGTTGGGAAG  1554

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1555  ACTTAATCTGAGCAAAACCCATGATTCTTCAAGACAGAGACTCTATAACACACGTGGAAAAAGTTTGACACAAA  1628

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1629  ACTCAGCTCCAAGCAGAAGTTATTTAAGAAAGAATCCTGATAAGTTTCATGGTTATGAAGAACCATATTTTCTT  1702

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1703  AAGCATCAAAGAGCTCATAGCATAGAAAAAAACTGTGTGTGTAGTGAATGTGGGAAAGCTTTTCGTTGTAAGTC  1776

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1777  ACAGCTCATTGTACATCTCAGAATTCATACAGGAGAGAGACCTTATGAATGCAGTAAATGTGAAAGAGCCTTCA  1850

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1851  GTGCCAAGTCAAACCTTAATGCTCATCAGAGAGTTCATACAGGAGAAAAACCCTACTCATGTAGTGAGTGCGAG  1924

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1925  AAGGTCTTCTCTTTCAGGTCACAGCTCATTGTCCATCAGGAAATTCACACAGGAGGGAAACCCTATGGCTGCAG  1998

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1999  TGAATGTGGGAAAGCCTACAGTTGGAAATCACAGCTTCTTTTACACCAGAGAAGTCACACAGGAGTGAAACCGT  2072

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2073  ATGAATGCAGCGAATGTGGGAAAGCCTTTAGTTTGAAGTCTCCATTCGTTGTACACCAGAGAACTCATACAGGA  2146

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2147  GTGAAACCCCATAAATGCAGTGAATGTGGGAAAGCCTTTAGGAGTAAGTCCTATCTCCTTGTTCACATCCGAAT  2220

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2221  GCATACAGGAGAAAAACCCTATCAATGCAGTGATTGTGGGAAAGCCTTCAATATGAAGACACAACTCATTGTAC  2294

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2295  ATCAGGGAGTTCACACAGGAAATAATCCTTATCAATGCGGTGAATGTGGGAAAGCCTTTGGTAGGAAGGAACAG  2368

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2369  CTCACTGCACATCTGAGAGCTCATGCAGGAGAGAAGCCCTATGGATGCAGTGAATGTGGGAAGGCTTTCAGCAG  2442

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2443  CAAGTCATACCTTGTTATACATAGGAGAACACACACCGGAGAGAGACCCTATGAATGTAGTTTGTGTGAGAGAG  2516

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2517  CCTTTTGTGGAAAATCACAGCTGATTATACATCAGAGAACTCATTCAACTGAGAAGCCCTATGAATGCAATGAA  2590

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2591  TGTGAAAAAGCCTACCCTAGGAAGGCATCACTTCAGATACACCAGAAAACTCATTCGGGAGAGAAACCTTTTAA  2664

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2665  ATGCAGTGAATGTGGAAAAGCCTTCACTCAGAAGTCATCTCTCAGTGAACATCAGAGAGTTCACACCGGAGAGA  2738

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2739  AACCATGGAAATGCTCTGAATGTGGGAAATCCTTCTGTTGGAATTCAGGGCTTCGTATACATCGGAAGACTCAT  2812

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2813  AAATGAGAAATCAGAATGATGCAATGTGAGAAACTGATGTTCAGGAGACTTCGGATAATATAGACAGGATTTAC  2886

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2887  AAGCAGGAGGCCCTAAAATTACACTCATGTCAAAAATCAGAGAGGAGAGAGACCAACCATATTTGGGATGAGTG  2960

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2961  TAAAAGCTTTCAGAAATAAGTTACAAATCTTTGTAGATGAAAATAATGGAAGGAATGTGGAGCAATAAATGTAT  3034

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3035  CAAATGTTGTAGTATCATCATGAAGATTCAGAGAATTTACACTAGGAACACCTTATAAGTTGAATAAATTAAGG  3108

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3109  AAGCATTTTCCCATTGAAAGTGTGTTCCATGGAAAGTCACATTCCAGATTTGAAGCTGTGTTTTTGTAAAATAA  3182

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3183  AATCTTGGTATGAACAGTTGACTTCATGGTGGAGTATAAAGTTGTTTTTTTAAAAATATGTAAATAATGTTCAG  3256

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3257  GAAAAACGCAGGGAACAGAGTCTTAAAGTTAATGGATATTTAATGTGACTTTCCTGAGTTAACACTGAATAGTA  3330

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3331  TTTCTAAAATTTTTTGTACTTTATTTTTTAATGTAACTTGTTCTATCTATCTATATATATATTTGATAGTTTGT  3404

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3405  GGAATAATATCCCCCAGTATTTTCCATATTAAATGCTAATTATCTTTTGATTTCTTTTTCATAAGCAGATCTGG  3478

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3479  CATTTATTACAGGGCTGCCGCTTAAGAGAACTCATTATAATGAACGTTTATTATATTTTGCAGTTCCATGCCTG  3552

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3553  TTGTCCATTGATTGACATGAGCACCCCTGTTTTCTCTGGAGAAATACCTCCCCTCTCTGGGGTGCTTCCTGTGG  3626

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3627  TAGTGTCTTTCAGGTATCCGTTCCACTAGCTACAGGCATTCAGATTGGGAGAAATAGCACCTCAGGAACTGCAT  3700

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3701  CCTCAAGAGTCCCATCTGCACCTGTAGCAGAGTTTGACGATGAGATCCTGGTCTTCAATCTGATATTATAACGG  3774

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3775  GATGAGACATTGGGATCTTGGGGGAGGAGATGGCTGTACTTTGCATGGGGGGGATGTGAATTGTTACAGCCAGA  3848

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3849  GGGCAGACCGTGGTAATCCCAAACATGGCCAAAACAGTATCTCCTATCACACATTCTCTTCCACAGTGTGCCTG  3922

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3923  CTATATATTTCTCCCATGAGAGTTGAGGTCGACACCAGCTCCTTGAACCTGGGTGGACTTGTAATTTGCCTGTA  3996

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3997  GCCAACAGAATGCAGCAGAAATAGGCCAGGTGCAGTGGCTCATACCTGTAATCCCAGAGCTTCAGGAGGCCAAG  4070

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 4071  GCAGGAAAATTGCTTGAGCCCAGGAGTTTGAGACCAGCCTGGGAAACACAGTGAGACCCCGTTTCTATTTAAGA  4144

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 4145  AAGAAAAAAAAGAATGCAGCAGAGATGAAGCTGTGTAACTTCCAAAGCTAGGTCATAAAAGGTGATGCAGCTTC  4218

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 4219  CATCTTGTCACTGGAATTCACACTCTTGAACCATTCAGCAGCCATATAAGCAGTCCAATGGCCCTGAGCTGCCC  4292

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 4293  TGCAGTAAGAAAGCCCAAACTAGCTCACACACAGACTACATCAAGAGTGAGAGATGCCTAAAACACCCCCAGGC  4366

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 4367  ATTCCAGCCCCTTCTGTTCTAGATCTAGCCTTAGAAAAAGCTGCCTAGCTGAGCCTATCTTGAATTTCTGACCC  4440

Query    1  --------------------------------------------ATGGAGTCTCACTCTGTCACCCAGGCTGGA  30
                                                        |||.|.|||||||||.|  |||||||||||
Sbjct 4441  AGGAAACTATTAGATATAATAAGTCACTTTTTTTTTTTTTTGAGATGCACTCTCACTCTTT--CCCAGGCTGGA  4512

Query   31  GTGCAGTGGCGTGATCTTGGCTCACTGCAACCTCTGCCTCCTGGGTTCAAGCAATTCTCCCACCTCAGCCTCCC  104
            ||||||||||..||||.||||||||||||.||||..|||.|||||||||||||.|||| |..||||||||||||
Sbjct 4513  GTGCAGTGGCACGATCCTGGCTCACTGCAGCCTCCTCCTACTGGGTTCAAGCAGTTCT-CTGCCTCAGCCTCCC  4585

Query  105  AAGTAGCTGGGATTACAGACGTG--TGCCACCATACCTGGGTAATTTTTGCATTTTTAGTGGAGAGGGAGTTTC  176
            ||||||||||||||||||  |||  .||||||||||.|||.|||||||||.|||||||||.||||.||.|||||
Sbjct 4586  AAGTAGCTGGGATTACAG--GTGCTCGCCACCATACTTGGCTAATTTTTGTATTTTTAGTAGAGATGGGGTTTC  4657

Query  177  ACCATGTTGGCCAGGTTGGTCT----------------------------------------------------  198
            |||||.||||.||||.||||||                                                    
Sbjct 4658  ACCATCTTGGGCAGGCTGGTCTTGAACTCCTGACCTCATGATCCACCTGCCTCGGCCTCCCAAAGTGCTGGGAT  4731

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 4732  TACAGGCGTAAGCCACTGCGCCTGGCCAATAAGTCTCTTTTTTTAGGTAATCAAGTTAAAATAATAAGTCACTA  4805

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 4806  AATTTTGAGGTGTTCTGTTATGTAGAAGAGTGACTGGACCAACCCATAAAAAGGACAACTTCATATAGTTCAAC  4879

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 4880  TTTTTTTTTTTTTTTTTTTTTTTTTGATACAGAGTCTCGTTCTGTCACCCAGGCTGGAGTGCAGTGGCATAATT  4953

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 4954  TCAGCTCATGGCAACCTCCGCCTCCAAGGTTCAAGTGATTATCATGCCTCAGCCTCCCAAGTAGCTGAGATTAC  5027

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 5028  GGGCACCTGCCACCACGCCTGGATAATGTTTGTATTTTTAGTAGAGGTGGGGTTTCACCATGTTGACTAGGCTG  5101

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 5102  GTCTCGAACTCCTGACCTCAGGTGATCTGCCCGCCTTGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCAT  5175

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 5176  TGCATCTGGCCTAGTTCAACTTTATAAATAAATATGTCAAAGATAATTCAATATTAAAGTTTATATATTTATCA  5249

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 5250  TTTTAACCAAATAATGTAGAAATAGAGTGATATGAAACATAAATACCTATATAGGTTAAGAAAAATATTCAATA  5323

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 5324  AATTGGAACAATTCTTTGTTATAAAATTCTTAAGAAACTCAGAATAAAATGCAACACCTTTTTACGATTATAAA  5397

Query  199  -----------------------------------------------------------------  198
                                                                             
Sbjct 5398  CCCCTCAGCAAACATACTTCAAGCAGAACCTTACGAACAGTATAATTAAAATGAGGAACCGCTGA  5462

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