Nucleotide Global Alignment

Description

Query:
ccsbBroad304_11616
Subject:
XR_002956748.1
Aligned Length:
3920
Identities:
165
Gaps:
3733

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  GACTGACGTCCCGCCCTCTGGCTGTTTCCTGGCCGAGGTGGGTCGGTAGTAGCGATGGCGGGTCTGACTGACTT  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  GCAGCGGCTACAGGCCCGAGTGGAAGAGCTGGAGCGCTGGGTGTACGGGCCGGGCGGGGCGCGCGGCTCACGGA  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  AGGTGGCTGACGGCCTGGTCAAGGTGCAGGTGGCTTTGGGGAACATTTCCAGCAAGAGGGAGAGGGTGAAGATT  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  CTCTACAAAAAGATTGAAGATCTGATCAAGTACCTGGATCCTGAGTACATCGACCGCATTGCCATACCTGATGC  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  CTCTAAGCTGCAATTCATCCTAGCAGGTAATGCTGGACTACATGTGTACATGCATCTGAGGATGTGGGTCGTCG  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  GGGAGGTTAAGCACAGAGATGGCCTCTCCATCCAGTCTTCTGGTGGATACAAGCCCTGGATGCTGCTCTCTGGA  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  ATTGTGGCCTGGTTCTGGGTTGAGGATCCTATGGATCCTCTAGTAGACATTGAGTACAGTATACCTCTGCACCA  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  GCTGCAGGCCATGGTGCCAGCCACAGTGGGAGCTAGTCCAGTGTTCTATCAATAGTTTGCCTCTTGGATTTTCC  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  TTCAGAACCTTCCTCACTTCTGCTCACTAGACAGAGGAGCTTCTAGGAAAGGGTAGGGGCAGAGAGCATTGCCA  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  TTAAAGAACAGAGAGAGTATTGGCATGAGTTTCAACATCTTTCTTTCATGTGAGAAAGCTCTGCAGTGTCAGAG  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  TTCTAGGCAGGAACTATTGCCTTGGCAATGTCTGCTAATCAGTCAGCCATTCTATAAGCTAGGGTTTTTTGAGC  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  TTCGTTATTCATCCAAAAGATGTATAATGATCATCTACTCTGATCCAGGTTCTTTCCTAAGTGAGGAAGCATAC  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  AGTGGTGAACCAGAAAGTCCCTGCCCTCATGGGCACAGCCAGAGCTAGGGGAGACAGGGTCCCTGCTTCAGGGA  962

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  963  CCTGAGCTTATAACCCAGATGGGAGATCAGTCTCCCAGGAGACTGATCAGTGCAATGCAGCACTGAGGACTGGG  1036

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1037  TAAGGATGGGCCACTCCTGCTAAAAGGGCTGTCAGAGTTCCCAAAGGGCTCTTGGTCAATTGCCATCGCTCAAG  1110

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1111  CACCAAGTTTAGATATTCTCCTGCACTGACTCTTGAGTCCAGCCTCTCCATCCCTCCCTGTGGCACTGCCTCAG  1184

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1185  GAATTGTGCATCCACTTGCATATGAATGGTTGCACAGTCTCCTAAATCATACTCTTGACCCTAATCTTTCCCTT  1258

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1259  CCTGCATGTGGTTCAGTCTCACCCTCACAAAAACATGTTCCCAACATGTCACTTTGCCTACTTTGGAACCTCAG  1332

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1333  TGTATCCTGCCTTGCTAGGATAAAGTCCTAATTCCATAGTCTGCCATTCAAAGCCTTTCAGTCGGCCGGGTCTA  1406

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1407  CCCTCCCATCCAACTCTGTTTCCTGTGCTCTCCCTACTCCAGTTCAGCTAATTGAATTCTTTCTCCTCTACTAA  1480

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1481  TTGACAGGCATTCCTGCCTCTAAGCATTTGCACGTAACAGTCCTCTCTCTTGAATACCCTTCCCACTCTATGGA  1554

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1555  TTTCAGTGCATTGAAATCCCGTGTGCATACAGGGCCTAGCCCAGATCCTGCTCTCCTCACTGGACTCTTCCATT  1628

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1629  ACTGTCCCAGCTCTCCTCCAGCATATAATTGTCTATGCCTCTGAGAGCCACTGAGCAGAACCTGCCTGGCGTAG  1702

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1703  TCTGCCACATATCTCTTTTAGACCTTCCTGGGGACCCTTGGGTGTGGGGATCCAAGTCTGAAGTATTTTGTATT  1776

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1777  TTGTGGCCTAGGAGGTGCTCCCTGAGTTTGTTGATAGGAGGCTAGAAGAAGAGGTCTTGAAGTTAAACCTTGGA  1850

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1851  GAAAGGTGGGATTTGGAGAAATTGAGAGGCTCATTAGGCTCAGATGGGTCAGACCTGAGGCATCCAGGAGAGTT  1924

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1925  GGGGGCAGGATGGAAATGTGCACCTAGAGAAGGGGGCAGTGGACAGAGTCACTGTCCAAAGCTCTAGGACCTAG  1998

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1999  CCATCTCCCTTGCCAGGTCCTCAGGCCCTTACATGGGCTGATTAGCAATGCCCAGGTTTGCTTCACTGCAACTA  2072

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2073  TCTTGTCCATTTTTGCTTTAGAGGAGCAGTTTATCCTTTCCCAGGTTGCACTCCTGGAGCAGGTGAATGCCTTG  2146

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2147  GTGCCCATGCTGGACAGTGCTCACATCAAAGGTATCTCTCTGGGGTTATAGCTTCACTACTCTGGTTGGGGAGG  2220

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2221  TAGGTGGATGGATGGGCAAGACTTTCCTGTGTTTCAGGTTGTGTGGATTCGGGTTGGGTCTGTTCCTTATCTTT  2294

Query    1  ---------------ATGGAGTCTCACTCTGTCACCCAGGCTGGAGTGCAGTGGCGTGATCTTGGCTCACTGCA  59
                           |..|||||..||||||||||||||||||||||||||||||.||||||||.|||||||||
Sbjct 2295  TTTTTTTTTTTTTGGACAGAGTCGTACTCTGTCACCCAGGCTGGAGTGCAGTGGCATGATCTTGACTCACTGCA  2368

Query   60  ACCTCTGCCTCCTGGGTTCAAGCAATTCTCCCACCTCAGCCTCCCAAGTAGCTGGGATTACAGACGTGTGCCAC  133
            |||.||||||||| |||||||.|||...|||||||| .|||||||||||||||.|||||||||..|||||||||
Sbjct 2369  ACCGCTGCCTCCT-GGTTCAAACAAACTTCCCACCT-TGCCTCCCAAGTAGCTAGGATTACAGGTGTGTGCCAC  2440

Query  134  CATACCTGGGTAATTTTTGCATTTTTAGTGGAGAGGGAGTTTCACCATGTTGGCCAGGTTGGTCT---------  198
            ||.||||||.|         |||||||||.||||.||.||||||||||||||.|||||.||||||         
Sbjct 2441  CACACCTGGCT---------ATTTTTAGTAGAGACGGGGTTTCACCATGTTGTCCAGGCTGGTCTCAAACTCCT  2505

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 2506  GGCCCCATGTGATCCACCTGCCTCGGCCTCTCAGAGTGCTGGGATTACAGGCGTGAGCTACTGTGCCTGGCCTG  2579

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 2580  TTCCTTATCTTTATCCTCACCCTGAGGTACTTGCCACATCCACCAATTAAAATTACCAGGATAGAGAGCCCAGT  2653

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 2654  TTTAGGACCTCAGGCAATTTGGGCCTGAGAACACTAGCCTAAGCTCTAGCAGTCCCCAGCTCTGGGGATTCCTT  2727

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 2728  CTGCCTTCTACCTACCCCCAAGCATCTCTTCTTCAAGGTGCTGCAGAACCCAGATTTTACTATCAGAGTCTCTG  2801

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 2802  CCAGGTCCATGAATGTATGTGAATTCTTTCTGCTGCACTGCTGAGAGCAGTCCCTGGGCCTGGACTTTGACAAG  2875

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 2876  CAGATAGTGGCTTTAATTGAATCCAGATATCCATCTTGTCTGTCTGTGGAGGTATTTTTCCCAGCTCCCCCTCC  2949

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 2950  CTACCCCTGATCAGCTGCCCGCTGAGTATCTGACAGCCTTAAGCTTTGAGCCCAGCATGGTGGCCAAGCCTTGG  3023

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 3024  CGTGTTGGATTCCAGCTTAGGGACCTGGCATCCATCTTCAGACTCCCTGTTCCCTAAGCCAGGCAGACCTGCCC  3097

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 3098  CCGCTGGGCTGAGAGCAAAGGGACAGGTCCTATAATAGCCAAAGCTCTCTTTACCTGGTCCTGCTTATAGCACT  3171

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 3172  GGGGTGGGGGTAGGGAGCAACACTGGGAACCCCAAGGTTTTGTCTTCTCCTCGGGACATGTATCTTCCCCTCCC  3245

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 3246  CTATGGGTCCTGGAGTAAGACTGGAGTGGGCAGGGAGCCCCACTGCCACCTCCAGCTGCAGCAGTCGATGAAGT  3319

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 3320  CTGGCGTTTGTTTAGCTTCTCCACTCAATACTCTAATCCTGCCAAAGACCTAATAGACTATTGAGCAGTCCCGG  3393

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 3394  GGGAGGGCACAAGCATCATCCAGCAGTGTGTGTTGTGTTTTACAGCCGTTCCTGAGCATGCTGCCCGCCTGCAG  3467

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 3468  CGCTTGGCCCAGATCCACATTCAGCAGCAGTTCCTTTCTGTGCTACACTTTGGCCCTACAGGACCAGTGTGTGG  3541

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 3542  AAATCACTGAGGAGTCCAAGGCTCTCCTGGAGGAATACAACAAGACTACAATGCTTCTCTCCAAGCAATTCGTG  3615

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 3616  CAGTGGGATGAGCTACTTTGCCAGCTAGAGGCCGCCACGCAAGTGAAGCCAGCAGAGGAGTGATAGCTGCTCCC  3689

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 3690  CATCCCAAAGTGGGCCTGGGCAGTCAGGCTCCAGGGCCCTATGCCAACCTGCCTTTGTTACAAGGCAGAGGAAG  3763

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 3764  CTTTGTATTTATTGGCTTCAAGGCCCACCTCTCTGTACTCTGGGCTCTAAAGTTGGAGGTCAGGTTACCTGAGG  3837

Query  199  ------------------------------------------------------------------------  198
                                                                                    
Sbjct 3838  TTTGCAATTTGCAACACCCACCCTCCCCCCAATCAGTGTTCTTATTTCAGTGACAATAAACCATAGAGATGA  3909

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