Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_11616
- Subject:
- XR_002956748.1
- Aligned Length:
- 3920
- Identities:
- 165
- Gaps:
- 3733
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GACTGACGTCCCGCCCTCTGGCTGTTTCCTGGCCGAGGTGGGTCGGTAGTAGCGATGGCGGGTCTGACTGACTT 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GCAGCGGCTACAGGCCCGAGTGGAAGAGCTGGAGCGCTGGGTGTACGGGCCGGGCGGGGCGCGCGGCTCACGGA 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 AGGTGGCTGACGGCCTGGTCAAGGTGCAGGTGGCTTTGGGGAACATTTCCAGCAAGAGGGAGAGGGTGAAGATT 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 CTCTACAAAAAGATTGAAGATCTGATCAAGTACCTGGATCCTGAGTACATCGACCGCATTGCCATACCTGATGC 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 CTCTAAGCTGCAATTCATCCTAGCAGGTAATGCTGGACTACATGTGTACATGCATCTGAGGATGTGGGTCGTCG 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 GGGAGGTTAAGCACAGAGATGGCCTCTCCATCCAGTCTTCTGGTGGATACAAGCCCTGGATGCTGCTCTCTGGA 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 ATTGTGGCCTGGTTCTGGGTTGAGGATCCTATGGATCCTCTAGTAGACATTGAGTACAGTATACCTCTGCACCA 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 GCTGCAGGCCATGGTGCCAGCCACAGTGGGAGCTAGTCCAGTGTTCTATCAATAGTTTGCCTCTTGGATTTTCC 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 TTCAGAACCTTCCTCACTTCTGCTCACTAGACAGAGGAGCTTCTAGGAAAGGGTAGGGGCAGAGAGCATTGCCA 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 TTAAAGAACAGAGAGAGTATTGGCATGAGTTTCAACATCTTTCTTTCATGTGAGAAAGCTCTGCAGTGTCAGAG 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 TTCTAGGCAGGAACTATTGCCTTGGCAATGTCTGCTAATCAGTCAGCCATTCTATAAGCTAGGGTTTTTTGAGC 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 TTCGTTATTCATCCAAAAGATGTATAATGATCATCTACTCTGATCCAGGTTCTTTCCTAAGTGAGGAAGCATAC 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 AGTGGTGAACCAGAAAGTCCCTGCCCTCATGGGCACAGCCAGAGCTAGGGGAGACAGGGTCCCTGCTTCAGGGA 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 CCTGAGCTTATAACCCAGATGGGAGATCAGTCTCCCAGGAGACTGATCAGTGCAATGCAGCACTGAGGACTGGG 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 TAAGGATGGGCCACTCCTGCTAAAAGGGCTGTCAGAGTTCCCAAAGGGCTCTTGGTCAATTGCCATCGCTCAAG 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 CACCAAGTTTAGATATTCTCCTGCACTGACTCTTGAGTCCAGCCTCTCCATCCCTCCCTGTGGCACTGCCTCAG 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 GAATTGTGCATCCACTTGCATATGAATGGTTGCACAGTCTCCTAAATCATACTCTTGACCCTAATCTTTCCCTT 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 CCTGCATGTGGTTCAGTCTCACCCTCACAAAAACATGTTCCCAACATGTCACTTTGCCTACTTTGGAACCTCAG 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 TGTATCCTGCCTTGCTAGGATAAAGTCCTAATTCCATAGTCTGCCATTCAAAGCCTTTCAGTCGGCCGGGTCTA 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 CCCTCCCATCCAACTCTGTTTCCTGTGCTCTCCCTACTCCAGTTCAGCTAATTGAATTCTTTCTCCTCTACTAA 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 TTGACAGGCATTCCTGCCTCTAAGCATTTGCACGTAACAGTCCTCTCTCTTGAATACCCTTCCCACTCTATGGA 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 TTTCAGTGCATTGAAATCCCGTGTGCATACAGGGCCTAGCCCAGATCCTGCTCTCCTCACTGGACTCTTCCATT 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 ACTGTCCCAGCTCTCCTCCAGCATATAATTGTCTATGCCTCTGAGAGCCACTGAGCAGAACCTGCCTGGCGTAG 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 TCTGCCACATATCTCTTTTAGACCTTCCTGGGGACCCTTGGGTGTGGGGATCCAAGTCTGAAGTATTTTGTATT 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 TTGTGGCCTAGGAGGTGCTCCCTGAGTTTGTTGATAGGAGGCTAGAAGAAGAGGTCTTGAAGTTAAACCTTGGA 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 GAAAGGTGGGATTTGGAGAAATTGAGAGGCTCATTAGGCTCAGATGGGTCAGACCTGAGGCATCCAGGAGAGTT 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 GGGGGCAGGATGGAAATGTGCACCTAGAGAAGGGGGCAGTGGACAGAGTCACTGTCCAAAGCTCTAGGACCTAG 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 CCATCTCCCTTGCCAGGTCCTCAGGCCCTTACATGGGCTGATTAGCAATGCCCAGGTTTGCTTCACTGCAACTA 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 TCTTGTCCATTTTTGCTTTAGAGGAGCAGTTTATCCTTTCCCAGGTTGCACTCCTGGAGCAGGTGAATGCCTTG 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 GTGCCCATGCTGGACAGTGCTCACATCAAAGGTATCTCTCTGGGGTTATAGCTTCACTACTCTGGTTGGGGAGG 2220
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2221 TAGGTGGATGGATGGGCAAGACTTTCCTGTGTTTCAGGTTGTGTGGATTCGGGTTGGGTCTGTTCCTTATCTTT 2294
Query 1 ---------------ATGGAGTCTCACTCTGTCACCCAGGCTGGAGTGCAGTGGCGTGATCTTGGCTCACTGCA 59
|..|||||..||||||||||||||||||||||||||||||.||||||||.|||||||||
Sbjct 2295 TTTTTTTTTTTTTGGACAGAGTCGTACTCTGTCACCCAGGCTGGAGTGCAGTGGCATGATCTTGACTCACTGCA 2368
Query 60 ACCTCTGCCTCCTGGGTTCAAGCAATTCTCCCACCTCAGCCTCCCAAGTAGCTGGGATTACAGACGTGTGCCAC 133
|||.||||||||| |||||||.|||...|||||||| .|||||||||||||||.|||||||||..|||||||||
Sbjct 2369 ACCGCTGCCTCCT-GGTTCAAACAAACTTCCCACCT-TGCCTCCCAAGTAGCTAGGATTACAGGTGTGTGCCAC 2440
Query 134 CATACCTGGGTAATTTTTGCATTTTTAGTGGAGAGGGAGTTTCACCATGTTGGCCAGGTTGGTCT--------- 198
||.||||||.| |||||||||.||||.||.||||||||||||||.|||||.||||||
Sbjct 2441 CACACCTGGCT---------ATTTTTAGTAGAGACGGGGTTTCACCATGTTGTCCAGGCTGGTCTCAAACTCCT 2505
Query 199 -------------------------------------------------------------------------- 198
Sbjct 2506 GGCCCCATGTGATCCACCTGCCTCGGCCTCTCAGAGTGCTGGGATTACAGGCGTGAGCTACTGTGCCTGGCCTG 2579
Query 199 -------------------------------------------------------------------------- 198
Sbjct 2580 TTCCTTATCTTTATCCTCACCCTGAGGTACTTGCCACATCCACCAATTAAAATTACCAGGATAGAGAGCCCAGT 2653
Query 199 -------------------------------------------------------------------------- 198
Sbjct 2654 TTTAGGACCTCAGGCAATTTGGGCCTGAGAACACTAGCCTAAGCTCTAGCAGTCCCCAGCTCTGGGGATTCCTT 2727
Query 199 -------------------------------------------------------------------------- 198
Sbjct 2728 CTGCCTTCTACCTACCCCCAAGCATCTCTTCTTCAAGGTGCTGCAGAACCCAGATTTTACTATCAGAGTCTCTG 2801
Query 199 -------------------------------------------------------------------------- 198
Sbjct 2802 CCAGGTCCATGAATGTATGTGAATTCTTTCTGCTGCACTGCTGAGAGCAGTCCCTGGGCCTGGACTTTGACAAG 2875
Query 199 -------------------------------------------------------------------------- 198
Sbjct 2876 CAGATAGTGGCTTTAATTGAATCCAGATATCCATCTTGTCTGTCTGTGGAGGTATTTTTCCCAGCTCCCCCTCC 2949
Query 199 -------------------------------------------------------------------------- 198
Sbjct 2950 CTACCCCTGATCAGCTGCCCGCTGAGTATCTGACAGCCTTAAGCTTTGAGCCCAGCATGGTGGCCAAGCCTTGG 3023
Query 199 -------------------------------------------------------------------------- 198
Sbjct 3024 CGTGTTGGATTCCAGCTTAGGGACCTGGCATCCATCTTCAGACTCCCTGTTCCCTAAGCCAGGCAGACCTGCCC 3097
Query 199 -------------------------------------------------------------------------- 198
Sbjct 3098 CCGCTGGGCTGAGAGCAAAGGGACAGGTCCTATAATAGCCAAAGCTCTCTTTACCTGGTCCTGCTTATAGCACT 3171
Query 199 -------------------------------------------------------------------------- 198
Sbjct 3172 GGGGTGGGGGTAGGGAGCAACACTGGGAACCCCAAGGTTTTGTCTTCTCCTCGGGACATGTATCTTCCCCTCCC 3245
Query 199 -------------------------------------------------------------------------- 198
Sbjct 3246 CTATGGGTCCTGGAGTAAGACTGGAGTGGGCAGGGAGCCCCACTGCCACCTCCAGCTGCAGCAGTCGATGAAGT 3319
Query 199 -------------------------------------------------------------------------- 198
Sbjct 3320 CTGGCGTTTGTTTAGCTTCTCCACTCAATACTCTAATCCTGCCAAAGACCTAATAGACTATTGAGCAGTCCCGG 3393
Query 199 -------------------------------------------------------------------------- 198
Sbjct 3394 GGGAGGGCACAAGCATCATCCAGCAGTGTGTGTTGTGTTTTACAGCCGTTCCTGAGCATGCTGCCCGCCTGCAG 3467
Query 199 -------------------------------------------------------------------------- 198
Sbjct 3468 CGCTTGGCCCAGATCCACATTCAGCAGCAGTTCCTTTCTGTGCTACACTTTGGCCCTACAGGACCAGTGTGTGG 3541
Query 199 -------------------------------------------------------------------------- 198
Sbjct 3542 AAATCACTGAGGAGTCCAAGGCTCTCCTGGAGGAATACAACAAGACTACAATGCTTCTCTCCAAGCAATTCGTG 3615
Query 199 -------------------------------------------------------------------------- 198
Sbjct 3616 CAGTGGGATGAGCTACTTTGCCAGCTAGAGGCCGCCACGCAAGTGAAGCCAGCAGAGGAGTGATAGCTGCTCCC 3689
Query 199 -------------------------------------------------------------------------- 198
Sbjct 3690 CATCCCAAAGTGGGCCTGGGCAGTCAGGCTCCAGGGCCCTATGCCAACCTGCCTTTGTTACAAGGCAGAGGAAG 3763
Query 199 -------------------------------------------------------------------------- 198
Sbjct 3764 CTTTGTATTTATTGGCTTCAAGGCCCACCTCTCTGTACTCTGGGCTCTAAAGTTGGAGGTCAGGTTACCTGAGG 3837
Query 199 ------------------------------------------------------------------------ 198
Sbjct 3838 TTTGCAATTTGCAACACCCACCCTCCCCCCAATCAGTGTTCTTATTTCAGTGACAATAAACCATAGAGATGA 3909
