Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_11616
- Subject:
- XR_002959798.1
- Aligned Length:
- 4702
- Identities:
- 171
- Gaps:
- 4505
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GATTTGTGTGTAGAGATCACAAACGCAACTTCAGGGACCAAACATGTACAGTGTATAGGCCGAACTGTAACTTT 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 ATAAGAAAGTAGAAAGTAATGGGCTATGTTGGGAGCTAAACAGTGCATGTCTTGTCTAAGGAATTCAAAGCTTT 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 TAAAAACACTCTTGTAGGCTTACAAAACCTATGTTTGGAGGCAGGATTTATCTTGACCACTATTTCAACACCTC 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 TAAATAGGAATAGGACTTACATAGAAAAAAACTCGAAATGATCTCCTACCCCTTCAATTCCAGGCTCGACCTTT 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 AGAATGAAATTTCTCATCTTGGCTGGCCTTTTGAGCACTGCCACTGCTCTGCCCATCCCCGTGAGTACACCCTC 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 CTCAGCTGCTGACTCAATTTCAGATTTAGAGTCATCGCATTTCTCGGCTAGAAAGCAGGTCTTATCTTTTCATT 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 TCACAAAAGAGGAAAGCGGAACCCAGGAAAGTCATAGAACTAGGAGTTCACCACTCTTTGTCAGTCCAAGACTC 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 TGCCCAGTACAAATCTCAGCTCCATATGCCATGTGCTAGCTGTGTGACTTTGAACTAACCCATGGTTTCCTTGT 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 CTATAAAATGAGTCCTAGGAACACCTCAGAGTTGCACGGAGATGATTTTTTTAATGCATCTAAGGCAGAGAAGG 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 GTCCTATTTGAAAGATAGGATGTTCTCAATAAACTCAGTGATATAGAACAAATATTCTGCAGTGACCCAGGTCT 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 AAATTAAGCAGTTTGAATTGAGTTTCATTTGTAATGCCCTTGCCCCAAACCATCTCATGTTTTCTTAAAAGGCT 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 GTTACATGGAAATGCTCTGACACCAAAGGACTATCTACCTCATTGTAGATTTGATTTTAAAGAAGGAAATATTT 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 AAGATAACTTACATTGATTACTAAATTATGAATATAAAAACAACTTATGCCTGAATTATATTTGAGTGATCATA 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 CAGACACACCTTTAAAGTCCAATTTTTGAAAACCAGATTTGGATAAAAAGCTACATTCATCTATAGTGCCCTTG 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 ATAACAAACCTAATTTGTTTCTTTAGACCACAATCCTTTTTGCCAAAGCTGGCAAGTATCGTGGTCTAAAATTC 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 CAAACAATTTGTATTGCCTGTTTCTTTAGGCTGATGGGAATGCTGCAGTATACATATTTCATTAATTCTAATAT 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 GTACTTTTTGATATTTCAGCAGCTCTGAAATTGAGCTGTGTCTTAAAAACACAATTTGATAAAGTGTCACGGCA 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 GCTTAACAGCAGCGCTTTTCTTTTTTGGTAATTTATGAAATAATGGTGCTTTTGACAATGATAGCATCTAAGAA 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 TATATGAAATACTGTAATCCCAGAACATCATTAACTTCACCTATATAGACATTTTGTCATCAACTGACTATATA 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 CAAATGAGATCCACTGAGTCTAATCTGGGTTTACTAGTCTGAATATGAGGGCACCAAGTAGGCAAGAAACTCTC 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 TCCCCTGCACACTTTGTATCAAAGGAGCTTTTGAAGAAGTGAGGGAGCTTTCAAAATTTGTGTTTGGGGTGCAG 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 AACTTAAGTGTACATTTCCACACTCCCTTCACTTTGAGTTTATAACTACTGAGAACTAAATCAAGAACACCATT 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 CAAAGATTTACAAAAGGAAATATTCATGTAATATGGAATTAATCTTAAGAAATGTAAATAAAAGCATTCTTTGG 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 ATATAAATTTAAAAGCAAAAAGCCTTGGTCTTCCAAATCATTGCACAAAATTAATTAAACTTTTCCCTATTAGA 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 TATCCAACTGCTTTTTATTTCAGAAGTGAAGTTACATTACTGATGGGTATAATGCTCCATAGTGGCTTATTACT 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 TATTCTCCTTTAGAACAAAACCTCTCTTTAGTGGATAATGTATTTCCATATGCTGCTTTACCTTGTTGCTGTTA 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 TTGTTTTGCAAGCTCGAACAATATGCTGAAAGTTCCAGTGAACAGAGATTTATCTTTTACCCACCACAAGTACC 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 ACCATTTTTCCCTCAGGTCCTCTTTCCCCTACCTCCGCAACCGCCCCTGGTCCTCACACCTAATGATCTTATCG 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 CGGTAAATATATTCTGCCCTGTTATTCTATAAAGTCCATATAAATACTACATTCAACATCTCTCAATGGTCCTA 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 ATTAAGGTAGGGAGCAGAGAAAGGCACCCTAACAGAACAAACGCTACCTGAGGGCATTGTTCGTGCCTAAGATC 2220
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2221 TGTCACAGTTGGGACAGTGTTTAGCTTAAATATTACTGCATACACTCTAAGACAGACAGCTCAACAAGTAAAGA 2294
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2295 GATTCACCTTTTAGACGGAGTTGGTCAATTTCTTGAGCAAGCTGCCAGAATCTTAAAACAGGACCATGTGGATG 2368
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2369 CTACAAAACAATTTTCCAGTAAAACTGCTTGTATAAGCAAGTTCTCAAAACAAAGTATTCATAGTTGTCCTAAA 2442
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2443 ATTTTAGTTCAAGTATCATTCACACAGGGAATCTGAATCATTTATGAAAGATGGGACTTGTATGGAAGTGTACA 2516
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2517 CAGAGGGTTTCTTAACCATTCAAATCAATTTTCTAACTTTCAAATATGGTAAATATCATTACAAAGCTGTAGAA 2590
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2591 AGAAAATATTTCTGTGAATTAAAGGTATTTAAATCCAGATATTGTCATTTTAAAATCTTGTATCATATAAATAA 2664
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2665 TATACTAAGCAATAAAATGGAATTTTTCAATAAAATAGATTTTTGTATACAAAGTATACTAACTTGCATATGTA 2738
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2739 ATAAGTTAAATGTAGGTTTAAAAATTAACCTATTGACAGCACTGATCATCAATTTTTCTTCCTTCACAGTTACT 2812
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2813 CATTGCTATTTTGAACCAACTAGGGGTAAGGCTCTATTTTTATGCTATAATAAACTACACATTTACTTAATAGA 2886
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2887 CTAAAGATAACATCTTACTAAATTTTTTTTTGTTGTTTTTTTTTTTAACTTTTGGAACTTCTCTGGGGTAAGAT 2960
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2961 TTTATTTCCATGACTAAATTGATAAAGGTAAGTTATATTCAATGCCACGAAAGGTAAGAGAAACTCTTTGTAAC 3034
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3035 TATAAAAATATGAGAGTCAACCTCAACTGATCTACCAAACTAGAACTCATAAGTTATAAACTCATTTCCTCCAA 3108
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3109 AATCTTTACATCAAAATTTTTGCCAGTCTAAAAAGGTATTTTTTAATAATGTCCTTGATATTTCACAAAATTTA 3182
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3183 AATTTACAGGCATATATGCAATATGAAATTTCAAACAACAAAGTTTGCTTCAGGCTTTTTTTTTTTTTTTTTTG 3256
Query 1 ATGGAGTCTCACTCTGTCACCCAGGCTGGAGTGCAGTGGCGTGATCTTGGCTCACTGCAACCTCTG-CCTCCTG 73
| |||||||..||||||||||||||||||||||||||||||||||||.|||||||||||||||||| ||.||..
Sbjct 3257 A-GGAGTCTTGCTCTGTCACCCAGGCTGGAGTGCAGTGGCGTGATCTCGGCTCACTGCAACCTCTGCCCCCCCA 3329
Query 74 GGTTCAAGCAATTCTCCCACCTCAGCCTCCCAAGTAGCTGGGATTACAGACGTGTGCCACCATACCTGGGTAAT 147
||.||||||.|||||||..|||||||||.||.|||||||||.||||||..|.||||||||||.||||||.||||
Sbjct 3330 GGCTCAAGCGATTCTCCTGCCTCAGCCTTCCTAGTAGCTGGTATTACAAGCATGTGCCACCACACCTGGCTAAT 3403
Query 148 TTTTGCATTTTTAGTGGAGAGGGAGTTTCACCATGTTGGCCAGGTTGGTCT----------------------- 198
||||.||||||||||.||||.||.|||||||||..||.||||||.||||||
Sbjct 3404 TTTTACATTTTTAGTAGAGACGGGGTTTCACCACATTAGCCAGGCTGGTCTCAAACTCCTGACCTCAAGAGATC 3477
Query 199 -------------------------------------------------------------------------- 198
Sbjct 3478 CACCCGCTTCAGCCTCCCTAAGTGCTGGGATTACAGGCGTGAGCCACTGTGCCCAGGCTTTCAGGCTTATTTTT 3551
Query 199 -------------------------------------------------------------------------- 198
Sbjct 3552 GTCTTATAGGCAATTCATAGTAAATAATGAGAAAAGCCTACTGTAAAACTGCCACACCTAGAAATGGACTGATC 3625
Query 199 -------------------------------------------------------------------------- 198
Sbjct 3626 TCAAGGCAAGGTAACACATCTTAACAAAAAGCATTAACTTGCTGGATACAAAGGCTACAAACTTTGACTTCTAC 3699
Query 199 -------------------------------------------------------------------------- 198
Sbjct 3700 TTTGACTTTCACTGAAGTTTGCTTTCATGTAAAATACATACCAAAAAAAAGAAAGAAAGAAAGAAAGAAAGAAA 3773
Query 199 -------------------------------------------------------------------------- 198
Sbjct 3774 GAAAAACGTGGAGACCAAAAAGGTATATATCCCTTTTGTTGTTCTAATATTTTTAAGAAACAGGATCTTGCTAT 3847
Query 199 -------------------------------------------------------------------------- 198
Sbjct 3848 GTTGTCCTGGCTGGACTACAGAGGCTATTCACGGGCCCAATCATAGTGTATGTACTACAGCCTTGGAGAAAGAA 3921
Query 199 -------------------------------------------------------------------------- 198
Sbjct 3922 ACTGGATTTCCACCCAACTGCTTCTCTCCTAACAAGTTACATTGCCCTGAAGTGCTTATTTAGTACCTTTTACC 3995
Query 199 -------------------------------------------------------------------------- 198
Sbjct 3996 ATTTCAAATACTTAGACTATCTGAGGCCAAGTGGGAGAGATTAAGCTCTATGCTGTAAACAGTTAAGGATTCAA 4069
Query 199 -------------------------------------------------------------------------- 198
Sbjct 4070 TTTATCAGCATTTAACAGTTCCACATTATTTTCCACCTCCAACATACATGATTATACCAATATTAACACATCAG 4143
Query 199 -------------------------------------------------------------------------- 198
Sbjct 4144 CAATAAAATAACCATAAAATGGGAGGCATGGGTGAAGAAGGAATTGTGGTGAAAATATCTTCATATAAATTATA 4217
Query 199 -------------------------------------------------------------------------- 198
Sbjct 4218 ACTATAATCTGTATTATCTATTTTGACAGAAATAATTCTCCCACTACTATGCCAGAAGTTACGTATGGTTAGTA 4291
Query 199 -------------------------------------------------------------------------- 198
Sbjct 4292 AAATCTCCAAATTCTTTCATGCATTTATATCCTTTTCAATATTTTTATCATGAGTTTAATTGCCTCTGATTGTG 4365
Query 199 -------------------------------------------------------------------------- 198
Sbjct 4366 TCCACAACGGTAAATTAATAATATGATGAAAATAGGTGTAAACAAGACCAATTAATTACAAATGCTTTCTTCAA 4439
Query 199 -------------------------------------------------------------------------- 198
Sbjct 4440 AGGATGTATTTTAAAGTCAGTTTATTAAAACTCCAGAAATATTTTAGAAAATAACCACCACCAGAAGTCCTAAG 4513
Query 199 -------------------------------------------------------------------------- 198
Sbjct 4514 CATAAGAAAACATACTGTTAAATAAGAATAGCCTCTCGAAGTGCTCAGAATTTTCAAGTTCCCCCTTTAGCCAC 4587
Query 199 -------------------------------------------------------------------------- 198
Sbjct 4588 CAAATATTTAAAGTAGTTATGATCCTAAGGAAACTTTGCATATCCTTCTATTTGAGTTTGAAATGCTTTCAAAA 4661
Query 199 ---------------------------------------- 198
Sbjct 4662 GCTCAAGAACACCTGCTGACAAAACAAACACTGACTGTGG 4701
