Nucleotide Global Alignment

Description

Query:
ccsbBroad304_11616
Subject:
XR_002959798.1
Aligned Length:
4702
Identities:
171
Gaps:
4505

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  GATTTGTGTGTAGAGATCACAAACGCAACTTCAGGGACCAAACATGTACAGTGTATAGGCCGAACTGTAACTTT  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  ATAAGAAAGTAGAAAGTAATGGGCTATGTTGGGAGCTAAACAGTGCATGTCTTGTCTAAGGAATTCAAAGCTTT  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  TAAAAACACTCTTGTAGGCTTACAAAACCTATGTTTGGAGGCAGGATTTATCTTGACCACTATTTCAACACCTC  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  TAAATAGGAATAGGACTTACATAGAAAAAAACTCGAAATGATCTCCTACCCCTTCAATTCCAGGCTCGACCTTT  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  AGAATGAAATTTCTCATCTTGGCTGGCCTTTTGAGCACTGCCACTGCTCTGCCCATCCCCGTGAGTACACCCTC  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  CTCAGCTGCTGACTCAATTTCAGATTTAGAGTCATCGCATTTCTCGGCTAGAAAGCAGGTCTTATCTTTTCATT  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  TCACAAAAGAGGAAAGCGGAACCCAGGAAAGTCATAGAACTAGGAGTTCACCACTCTTTGTCAGTCCAAGACTC  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  TGCCCAGTACAAATCTCAGCTCCATATGCCATGTGCTAGCTGTGTGACTTTGAACTAACCCATGGTTTCCTTGT  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  CTATAAAATGAGTCCTAGGAACACCTCAGAGTTGCACGGAGATGATTTTTTTAATGCATCTAAGGCAGAGAAGG  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  GTCCTATTTGAAAGATAGGATGTTCTCAATAAACTCAGTGATATAGAACAAATATTCTGCAGTGACCCAGGTCT  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  AAATTAAGCAGTTTGAATTGAGTTTCATTTGTAATGCCCTTGCCCCAAACCATCTCATGTTTTCTTAAAAGGCT  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  GTTACATGGAAATGCTCTGACACCAAAGGACTATCTACCTCATTGTAGATTTGATTTTAAAGAAGGAAATATTT  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  AAGATAACTTACATTGATTACTAAATTATGAATATAAAAACAACTTATGCCTGAATTATATTTGAGTGATCATA  962

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  963  CAGACACACCTTTAAAGTCCAATTTTTGAAAACCAGATTTGGATAAAAAGCTACATTCATCTATAGTGCCCTTG  1036

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1037  ATAACAAACCTAATTTGTTTCTTTAGACCACAATCCTTTTTGCCAAAGCTGGCAAGTATCGTGGTCTAAAATTC  1110

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1111  CAAACAATTTGTATTGCCTGTTTCTTTAGGCTGATGGGAATGCTGCAGTATACATATTTCATTAATTCTAATAT  1184

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1185  GTACTTTTTGATATTTCAGCAGCTCTGAAATTGAGCTGTGTCTTAAAAACACAATTTGATAAAGTGTCACGGCA  1258

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1259  GCTTAACAGCAGCGCTTTTCTTTTTTGGTAATTTATGAAATAATGGTGCTTTTGACAATGATAGCATCTAAGAA  1332

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1333  TATATGAAATACTGTAATCCCAGAACATCATTAACTTCACCTATATAGACATTTTGTCATCAACTGACTATATA  1406

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1407  CAAATGAGATCCACTGAGTCTAATCTGGGTTTACTAGTCTGAATATGAGGGCACCAAGTAGGCAAGAAACTCTC  1480

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1481  TCCCCTGCACACTTTGTATCAAAGGAGCTTTTGAAGAAGTGAGGGAGCTTTCAAAATTTGTGTTTGGGGTGCAG  1554

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1555  AACTTAAGTGTACATTTCCACACTCCCTTCACTTTGAGTTTATAACTACTGAGAACTAAATCAAGAACACCATT  1628

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1629  CAAAGATTTACAAAAGGAAATATTCATGTAATATGGAATTAATCTTAAGAAATGTAAATAAAAGCATTCTTTGG  1702

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1703  ATATAAATTTAAAAGCAAAAAGCCTTGGTCTTCCAAATCATTGCACAAAATTAATTAAACTTTTCCCTATTAGA  1776

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1777  TATCCAACTGCTTTTTATTTCAGAAGTGAAGTTACATTACTGATGGGTATAATGCTCCATAGTGGCTTATTACT  1850

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1851  TATTCTCCTTTAGAACAAAACCTCTCTTTAGTGGATAATGTATTTCCATATGCTGCTTTACCTTGTTGCTGTTA  1924

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1925  TTGTTTTGCAAGCTCGAACAATATGCTGAAAGTTCCAGTGAACAGAGATTTATCTTTTACCCACCACAAGTACC  1998

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1999  ACCATTTTTCCCTCAGGTCCTCTTTCCCCTACCTCCGCAACCGCCCCTGGTCCTCACACCTAATGATCTTATCG  2072

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2073  CGGTAAATATATTCTGCCCTGTTATTCTATAAAGTCCATATAAATACTACATTCAACATCTCTCAATGGTCCTA  2146

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2147  ATTAAGGTAGGGAGCAGAGAAAGGCACCCTAACAGAACAAACGCTACCTGAGGGCATTGTTCGTGCCTAAGATC  2220

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2221  TGTCACAGTTGGGACAGTGTTTAGCTTAAATATTACTGCATACACTCTAAGACAGACAGCTCAACAAGTAAAGA  2294

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2295  GATTCACCTTTTAGACGGAGTTGGTCAATTTCTTGAGCAAGCTGCCAGAATCTTAAAACAGGACCATGTGGATG  2368

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2369  CTACAAAACAATTTTCCAGTAAAACTGCTTGTATAAGCAAGTTCTCAAAACAAAGTATTCATAGTTGTCCTAAA  2442

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2443  ATTTTAGTTCAAGTATCATTCACACAGGGAATCTGAATCATTTATGAAAGATGGGACTTGTATGGAAGTGTACA  2516

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2517  CAGAGGGTTTCTTAACCATTCAAATCAATTTTCTAACTTTCAAATATGGTAAATATCATTACAAAGCTGTAGAA  2590

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2591  AGAAAATATTTCTGTGAATTAAAGGTATTTAAATCCAGATATTGTCATTTTAAAATCTTGTATCATATAAATAA  2664

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2665  TATACTAAGCAATAAAATGGAATTTTTCAATAAAATAGATTTTTGTATACAAAGTATACTAACTTGCATATGTA  2738

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2739  ATAAGTTAAATGTAGGTTTAAAAATTAACCTATTGACAGCACTGATCATCAATTTTTCTTCCTTCACAGTTACT  2812

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2813  CATTGCTATTTTGAACCAACTAGGGGTAAGGCTCTATTTTTATGCTATAATAAACTACACATTTACTTAATAGA  2886

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2887  CTAAAGATAACATCTTACTAAATTTTTTTTTGTTGTTTTTTTTTTTAACTTTTGGAACTTCTCTGGGGTAAGAT  2960

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2961  TTTATTTCCATGACTAAATTGATAAAGGTAAGTTATATTCAATGCCACGAAAGGTAAGAGAAACTCTTTGTAAC  3034

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3035  TATAAAAATATGAGAGTCAACCTCAACTGATCTACCAAACTAGAACTCATAAGTTATAAACTCATTTCCTCCAA  3108

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3109  AATCTTTACATCAAAATTTTTGCCAGTCTAAAAAGGTATTTTTTAATAATGTCCTTGATATTTCACAAAATTTA  3182

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3183  AATTTACAGGCATATATGCAATATGAAATTTCAAACAACAAAGTTTGCTTCAGGCTTTTTTTTTTTTTTTTTTG  3256

Query    1  ATGGAGTCTCACTCTGTCACCCAGGCTGGAGTGCAGTGGCGTGATCTTGGCTCACTGCAACCTCTG-CCTCCTG  73
            | |||||||..||||||||||||||||||||||||||||||||||||.|||||||||||||||||| ||.||..
Sbjct 3257  A-GGAGTCTTGCTCTGTCACCCAGGCTGGAGTGCAGTGGCGTGATCTCGGCTCACTGCAACCTCTGCCCCCCCA  3329

Query   74  GGTTCAAGCAATTCTCCCACCTCAGCCTCCCAAGTAGCTGGGATTACAGACGTGTGCCACCATACCTGGGTAAT  147
            ||.||||||.|||||||..|||||||||.||.|||||||||.||||||..|.||||||||||.||||||.||||
Sbjct 3330  GGCTCAAGCGATTCTCCTGCCTCAGCCTTCCTAGTAGCTGGTATTACAAGCATGTGCCACCACACCTGGCTAAT  3403

Query  148  TTTTGCATTTTTAGTGGAGAGGGAGTTTCACCATGTTGGCCAGGTTGGTCT-----------------------  198
            ||||.||||||||||.||||.||.|||||||||..||.||||||.||||||                       
Sbjct 3404  TTTTACATTTTTAGTAGAGACGGGGTTTCACCACATTAGCCAGGCTGGTCTCAAACTCCTGACCTCAAGAGATC  3477

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 3478  CACCCGCTTCAGCCTCCCTAAGTGCTGGGATTACAGGCGTGAGCCACTGTGCCCAGGCTTTCAGGCTTATTTTT  3551

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 3552  GTCTTATAGGCAATTCATAGTAAATAATGAGAAAAGCCTACTGTAAAACTGCCACACCTAGAAATGGACTGATC  3625

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 3626  TCAAGGCAAGGTAACACATCTTAACAAAAAGCATTAACTTGCTGGATACAAAGGCTACAAACTTTGACTTCTAC  3699

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 3700  TTTGACTTTCACTGAAGTTTGCTTTCATGTAAAATACATACCAAAAAAAAGAAAGAAAGAAAGAAAGAAAGAAA  3773

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 3774  GAAAAACGTGGAGACCAAAAAGGTATATATCCCTTTTGTTGTTCTAATATTTTTAAGAAACAGGATCTTGCTAT  3847

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 3848  GTTGTCCTGGCTGGACTACAGAGGCTATTCACGGGCCCAATCATAGTGTATGTACTACAGCCTTGGAGAAAGAA  3921

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 3922  ACTGGATTTCCACCCAACTGCTTCTCTCCTAACAAGTTACATTGCCCTGAAGTGCTTATTTAGTACCTTTTACC  3995

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 3996  ATTTCAAATACTTAGACTATCTGAGGCCAAGTGGGAGAGATTAAGCTCTATGCTGTAAACAGTTAAGGATTCAA  4069

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 4070  TTTATCAGCATTTAACAGTTCCACATTATTTTCCACCTCCAACATACATGATTATACCAATATTAACACATCAG  4143

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 4144  CAATAAAATAACCATAAAATGGGAGGCATGGGTGAAGAAGGAATTGTGGTGAAAATATCTTCATATAAATTATA  4217

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 4218  ACTATAATCTGTATTATCTATTTTGACAGAAATAATTCTCCCACTACTATGCCAGAAGTTACGTATGGTTAGTA  4291

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 4292  AAATCTCCAAATTCTTTCATGCATTTATATCCTTTTCAATATTTTTATCATGAGTTTAATTGCCTCTGATTGTG  4365

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 4366  TCCACAACGGTAAATTAATAATATGATGAAAATAGGTGTAAACAAGACCAATTAATTACAAATGCTTTCTTCAA  4439

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 4440  AGGATGTATTTTAAAGTCAGTTTATTAAAACTCCAGAAATATTTTAGAAAATAACCACCACCAGAAGTCCTAAG  4513

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 4514  CATAAGAAAACATACTGTTAAATAAGAATAGCCTCTCGAAGTGCTCAGAATTTTCAAGTTCCCCCTTTAGCCAC  4587

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 4588  CAAATATTTAAAGTAGTTATGATCCTAAGGAAACTTTGCATATCCTTCTATTTGAGTTTGAAATGCTTTCAAAA  4661

Query  199  ----------------------------------------  198
                                                    
Sbjct 4662  GCTCAAGAACACCTGCTGACAAAACAAACACTGACTGTGG  4701

GPP Web Portal Terms of Service

Effective Date: December 8, 2025
By using this site, you agree to our terms and conditions below.

Overview of Terms

The data made available on this website were generated for research purposes and are not intended for clinical or commercial uses. Commercial use (or other use for profit-making purposes) of the GPP Web Portal and its tools, is not permitted under these terms and may require a separate license agreement from Broad or its contributors. For more information, please contact partnering@broadinstitute.org.

The original data may be subject to rights claimed by third parties, including but not limited to, patent, copyright, other intellectual property rights, biodiversity-related access and benefit-sharing rights. It is the responsibility of users of Broad Institute services to ensure that their use of the data does not infringe any of the rights of such third parties.

Any questions or comments concerning these Terms of Use can be addressed to: legal@broadinstitute.org.

By accessing and viewing this GPP Web Portal, you agree to the following terms and conditions:

Attribution

You agree to acknowledge the Broad Institute (e.g., in publications, services or products) for any of your use of its online services, databases or software in accordance with good scientific practice. You agree to use the acknowledgment wording provided for the relevant tools as indicated on the FAQ for each tool.

Updating the Terms of Use

We reserve the right to update these Terms of Use at any time. When alterations are inevitable, we will attempt to give reasonable notice of any changes by placing a notice on our website, but you may wish to check each time you use the website. The date of the most recent revision will appear on this, the "GPP Web Portal Terms of Use" page. If you do not agree to these changes, please do not continue to use our online services. We will also make available an archived copy of the previous Terms of Use for comparison.

Indemnification and Disclaimer of Warranties

You are using this GPP Web Portal at your own risk, and you hereby agree to hold Broad and its contributors and their trustees, directors, officers, employees, and affiliated investigators harmless for any third party claims which may arise from your use of the GPP Web Portal, the tools available therein, or any portion thereof. Further, you agree to indemnify Broad, its contributors, and its and their trustees, directors, officers, employees, affiliated investigators, students, and affiliates for any loss, costs, claims, damages, or other liabilities arising from any unpermitted commercial or profit-making use you make of the GPP Web Portal. The GPP Web Portal is a research tool and is provided "as is". Broad does not represent that the GPP Web Portal is free of errors or bugs or suitable for any particular tasks.

ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS ARE DISCLAIMED. IN NO EVENT SHALL BROAD OR ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE GPP WEB PORTAL, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Governing Law

The terms and conditions herein shall be construed, governed, interpreted, and applied in accordance with the internal laws of the Commonwealth of Massachusetts, U.S.A. Furthermore, by accessing, downloading, or using the Database, You consent to the personal jurisdiction of, and venue in, the state and federal courts within Massachusetts with respect to Your download or use of the Database.