Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_11616
- Subject:
- XR_938957.3
- Aligned Length:
- 4061
- Identities:
- 171
- Gaps:
- 3864
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GATTTGTGTGTAGAGATCACAAACGCAACTTCAGGGACCAAACATGTACAGTGTATAGGCCGAACTGTAACTTT 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 ATAAGAAAGTAGAAAGTAATGGGCTATGTTGGGAGCTAAACAGTGCATGTCTTGTCTAAGGAATTCAAAGCTTT 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 TAAAAACACTCTTGTAGGCTTACAAAACCTATGTTTGGAGGCAGGATTTATCTTGACCACTATTTCAACACCTC 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 TAAATAGGAATAGGACTTACATAGAAAAAAACTCGAAATGATCTCCTACCCCTTCAATTCCAGGCTCGACCTTT 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 AGAATGAAATTTCTCATCTTGGCTGGCCTTTTGAGCACTGCCACTGCTCTGCCCATCCCCGTGAGTACACCCTC 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 CTCAGCTGCTGACTCAATTTCAGATTTAGAGTCATCGCATTTCTCGGCTAGAAAGCAGGTCTTATCTTTTCATT 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 TCACAAAAGAGGAAAGCGGAACCCAGGAAAGTCATAGAACTAGGAGTTCACCACTCTTTGTCAGTCCAAGACTC 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 TGCCCAGTACAAATCTCAGCTCCATATGCCATGTGCTAGCTGTGTGACTTTGAACTAACCCATGGTTTCCTTGT 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 CTATAAAATGAGTCCTAGGAACACCTCAGAGTTGCACGGAGATGATTTTTTTAATGCATCTAAGGCAGAGAAGG 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 GTCCTATTTGAAAGATAGGATGTTCTCAATAAACTCAGTGATATAGAACAAATATTCTGCAGTGACCCAGGTCT 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 AAATTAAGCAGTTTGAATTGAGTTTCATTTGTAATGCCCTTGCCCCAAACCATCTCATGTTTTCTTAAAAGGCT 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 GTTACATGGAAATGCTCTGACACCAAAGGACTATCTACCTCATTGTAGATTTGATTTTAAAGAAGGAAATATTT 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 AAGATAACTTACATTGATTACTAAATTATGAATATAAAAACAACTTATGCCTGAATTATATTTGAGTGATCATA 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 CAGACACACCTTTAAAGTCCAATTTTTGAAAACCAGATTTGGATAAAAAGCTACATTCATCTATAGTGCCCTTG 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 ATAACAAACCTAATTTGTTTCTTTAGACCACAATCCTTTTTGCCAAAGCTGGCAAGTATCGTGGTCTAAAATTC 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 CAAACAATTTGTATTGCCTGTTTCTTTAGGCTGATGGGAATGCTGCAGTATACATATTTCATTAATTCTAATAT 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 GTACTTTTTGATATTTCAGCAGCTCTGAAATTGAGCTGTGTCTTAAAAACACAATTTGATAAAGTGTCACGGCA 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 GCTTAACAGCAGCGCTTTTCTTTTTTGGTAATTTATGAAATAATGGTGCTTTTGACAATGATAGCATCTAAGAA 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 TATATGAAATACTGTAATCCCAGAACATCATTAACTTCACCTATATAGACATTTTGTCATCAACTGACTATATA 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 CAAATGAGATCCACTGAGTCTAATCTGGGTTTACTAGTCTGAATATGAGGGCACCAAGTAGGCAAGAAACTCTC 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 TCCCCTGCACACTTTGTATCAAAGGAGCTTTTGAAGAAGTGAGGGAGCTTTCAAAATTTGTGTTTGGGGTGCAG 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 AACTTAAGTGTACATTTCCACACTCCCTTCACTTTGAGTTTATAACTACTGAGAACTAAATCAAGAACACCATT 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 CAAAGATTTACAAAAGGAAATATTCATGTAATATGGAATTAATCTTAAGAAATGTAAATAAAAGCATTCTTTGG 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 ATATAAATTTAAAAGCAAAAAGCCTTGGTCTTCCAAATCATTGCACAAAATTAATTAAACTTTTCCCTATTAGA 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 TATCCAACTGCTTTTTATTTCAGAAGTGAAGTTACATTACTGATGGGTATAATGCTCCATAGTGGCTTATTACT 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 TATTCTCCTTTAGAACAAAACCTCTCTTTAGTGGATAATGTATTTCCATATGCTGCTTTACCTTGTTGCTGTTA 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 TTGTTTTGCAAGCTCGAACAATATGCTGAAAGTTCCAGTGAACAGGTGAACTTCTAATTGTATTTTTAAATAAT 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 GCATTCATCATTTTAAAAGTCTGCCATTGTCTGAAATGACTGACATCATGTTTCTTTTTACAGAGATTTATCTT 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 TTACCCACCACAAGTACCACCATTTTTCCCTCAGGTCCTCTTTCCCCTACCTCCGCAACCGCCCCTGGTCCTCA 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 CACCTAATGATCTTATCGCGTTACTCATTGCTATTTTGAACCAACTAGGGGTAAGGCTCTATTTTTATGCTATA 2220
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2221 ATAAACTACACATTTACTTAATAGACTAAAGATAACATCTTACTAAATTTTTTTTTGTTGTTTTTTTTTTTAAC 2294
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2295 TTTTGGAACTTCTCTGGGGTAAGATTTTATTTCCATGACTAAATTGATAAAGGTAAGTTATATTCAATGCCACG 2368
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2369 AAAGGTAAGAGAAACTCTTTGTAACTATAAAAATATGAGAGTCAACCTCAACTGATCTACCAAACTAGAACTCA 2442
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2443 TAAGTTATAAACTCATTTCCTCCAAAATCTTTACATCAAAATTTTTGCCAGTCTAAAAAGGTATTTTTTAATAA 2516
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2517 TGTCCTTGATATTTCACAAAATTTAAATTTACAGGCATATATGCAATATGAAATTTCAAACAACAAAGTTTGCT 2590
Query 1 -------------------------ATGGAGTCTCACTCTGTCACCCAGGCTGGAGTGCAGTGGCGTGATCTTG 49
| |||||||..||||||||||||||||||||||||||||||||||||.|
Sbjct 2591 TCAGGCTTTTTTTTTTTTTTTTTTGA-GGAGTCTTGCTCTGTCACCCAGGCTGGAGTGCAGTGGCGTGATCTCG 2663
Query 50 GCTCACTGCAACCTCTG-CCTCCTGGGTTCAAGCAATTCTCCCACCTCAGCCTCCCAAGTAGCTGGGATTACAG 122
||||||||||||||||| ||.||..||.||||||.|||||||..|||||||||.||.|||||||||.||||||.
Sbjct 2664 GCTCACTGCAACCTCTGCCCCCCCAGGCTCAAGCGATTCTCCTGCCTCAGCCTTCCTAGTAGCTGGTATTACAA 2737
Query 123 ACGTGTGCCACCATACCTGGGTAATTTTTGCATTTTTAGTGGAGAGGGAGTTTCACCATGTTGGCCAGGTTGGT 196
.|.||||||||||.||||||.||||||||.||||||||||.||||.||.|||||||||..||.||||||.||||
Sbjct 2738 GCATGTGCCACCACACCTGGCTAATTTTTACATTTTTAGTAGAGACGGGGTTTCACCACATTAGCCAGGCTGGT 2811
Query 197 CT------------------------------------------------------------------------ 198
||
Sbjct 2812 CTCAAACTCCTGACCTCAAGAGATCCACCCGCTTCAGCCTCCCTAAGTGCTGGGATTACAGGCGTGAGCCACTG 2885
Query 199 -------------------------------------------------------------------------- 198
Sbjct 2886 TGCCCAGGCTTTCAGGCTTATTTTTGTCTTATAGGCAATTCATAGTAAATAATGAGAAAAGCCTACTGTAAAAC 2959
Query 199 -------------------------------------------------------------------------- 198
Sbjct 2960 TGCCACACCTAGAAATGGACTGATCTCAAGGCAAGGTAACACATCTTAACAAAAAGCATTAACTTGCTGGATAC 3033
Query 199 -------------------------------------------------------------------------- 198
Sbjct 3034 AAAGGCTACAAACTTTGACTTCTACTTTGACTTTCACTGAAGTTTGCTTTCATGTAAAATACATACCAAAAAAA 3107
Query 199 -------------------------------------------------------------------------- 198
Sbjct 3108 AGAAAGAAAGAAAGAAAGAAAGAAAGAAAAACGTGGAGACCAAAAAGGTATATATCCCTTTTGTTGTTCTAATA 3181
Query 199 -------------------------------------------------------------------------- 198
Sbjct 3182 TTTTTAAGAAACAGGATCTTGCTATGTTGTCCTGGCTGGACTACAGAGGCTATTCACGGGCCCAATCATAGTGT 3255
Query 199 -------------------------------------------------------------------------- 198
Sbjct 3256 ATGTACTACAGCCTTGGAGAAAGAAACTGGATTTCCACCCAACTGCTTCTCTCCTAACAAGTTACATTGCCCTG 3329
Query 199 -------------------------------------------------------------------------- 198
Sbjct 3330 AAGTGCTTATTTAGTACCTTTTACCATTTCAAATACTTAGACTATCTGAGGCCAAGTGGGAGAGATTAAGCTCT 3403
Query 199 -------------------------------------------------------------------------- 198
Sbjct 3404 ATGCTGTAAACAGTTAAGGATTCAATTTATCAGCATTTAACAGTTCCACATTATTTTCCACCTCCAACATACAT 3477
Query 199 -------------------------------------------------------------------------- 198
Sbjct 3478 GATTATACCAATATTAACACATCAGCAATAAAATAACCATAAAATGGGAGGCATGGGTGAAGAAGGAATTGTGG 3551
Query 199 -------------------------------------------------------------------------- 198
Sbjct 3552 TGAAAATATCTTCATATAAATTATAACTATAATCTGTATTATCTATTTTGACAGAAATAATTCTCCCACTACTA 3625
Query 199 -------------------------------------------------------------------------- 198
Sbjct 3626 TGCCAGAAGTTACGTATGGTTAGTAAAATCTCCAAATTCTTTCATGCATTTATATCCTTTTCAATATTTTTATC 3699
Query 199 -------------------------------------------------------------------------- 198
Sbjct 3700 ATGAGTTTAATTGCCTCTGATTGTGTCCACAACGGTAAATTAATAATATGATGAAAATAGGTGTAAACAAGACC 3773
Query 199 -------------------------------------------------------------------------- 198
Sbjct 3774 AATTAATTACAAATGCTTTCTTCAAAGGATGTATTTTAAAGTCAGTTTATTAAAACTCCAGAAATATTTTAGAA 3847
Query 199 -------------------------------------------------------------------------- 198
Sbjct 3848 AATAACCACCACCAGAAGTCCTAAGCATAAGAAAACATACTGTTAAATAAGAATAGCCTCTCGAAGTGCTCAGA 3921
Query 199 -------------------------------------------------------------------------- 198
Sbjct 3922 ATTTTCAAGTTCCCCCTTTAGCCACCAAATATTTAAAGTAGTTATGATCCTAAGGAAACTTTGCATATCCTTCT 3995
Query 199 ----------------------------------------------------------------- 198
Sbjct 3996 ATTTGAGTTTGAAATGCTTTCAAAAGCTCAAGAACACCTGCTGACAAAACAAACACTGACTGTGG 4060
